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The map label for this gene is intD [C]

Identifier: 158317270

GI number: 158317270

Start: 6686578

End: 6688011

Strand: Reverse

Name: intD [C]

Synonym: Franean1_5518

Alternate gene names: 158317270

Gene position: 6688011-6686578 (Counterclockwise)

Preceding gene: 158317271

Following gene: 158317266

Centisome position: 74.46

GC content: 69.8

Gene sequence:

>1434_bases
ATGCCCACGAACAGCGACAACCACCCGACCATGAGCCTGCAACAGGCACTCCGAGAGCACCTCGACCGTGCCCGCGCCGG
ACAGGGCCTGCTCTACCCACAGCCCGAAGGAGAGACCAAGTTCGCCTGCGACATGGGCGACAGCCGCTACGGCTGCGCCT
GGTGCGACAACATCGAATGGCCCGACGGCAACCCCCCTGGACGGCGAGTGATGGCTGCGGGGGACGGTGCCGGGAACGAC
CGGCGGAAGCGGCGGCGCTCCCAGGGCGAAGGCGCCCTGTTCCAGCGGGCGAGCGACGGCCTGTGGGTCGGCCGCGCCGA
TCTCGGCTGGGTGGACGGGAAGCGTTCCCGCAAGACGGTCTACGGCAAGACCGAGAAGGAATGCCGGGAGAAGCTCACCA
AGGTCCAGCGCGCGGCCGAACTCGGCGTCAACGTCACGGCTGAGCGCCGGACGGTCGCGGTCTGGCTGGGGGAGTGGCTC
GACATCAAGGAGGGCGACGGCACCCGCGCGTCGACGCTCCGGGCGTACCGCTGGTTGATCAACATGCACATCGTGCCGGT
GATCGGCCGTGTCCAGCTCGACAAGCTGACTCCGTTGGACGTCCGGCGGCTCGTCGCCTCGGCGAAGAAGTCGGGGCTGT
CGGCGGGCAGCGTCCGCCACGTGCACAGCTTGATCCGCAACGCTCTGGCGGAAGCCGAGCGGCTGGACCTGGTGGCGCGC
AACGTGGCGAAGGCGGTCAAGGCGCCACCCACCCCGCATCGGGAGGTTCGGGCGCTGCGGCCGGAAGAGGCGCGCCGGCT
CGTCGAGGTGCTCCGTGGTGAGCGGCTCGAAGCGGTGTTCGCGTGTGGGCTGATGCTCGGGCTACGCCGCGGGGAGATCC
TCGGCCTGCGCTGGTCTGATGTCGACCTGGACGGCGCGACGCTCCACGTTCGCCAGACCCTGCAACGGGTCGACGGCTCG
CTGATGTTCGTCCCGGCGAAGACGGAGCGGTCCCACCGGCGGCTGCCCATCCCGCCGAAGCTGGTGACGATCCTGCGGCG
GCACCGGGCCACCCAGACAGCGGAACGAACCGGCCTCGGTGACGCCTGGACGGAAACCGGGCTGGTGTTCACCTCGTCCA
TCGGCACGCCGTTGGAACCAAGGAACGTCAACCGGCGGTTCGATGTGCTGCGCCGTCAGGCCGGGCTGCCGTGGCTACGG
CTGCATGATCTGCGCCACGCCTTCGCGTCGATGCTCTTCGCTGAGGGTGTGCCGGCCCGGACGGTGATGGAGCTGCTCGG
GCACTCCACGATCCAGCTCACCATGAACACCTACACGCACGTGATGCCGGAGACCCAGCGCGACGCGGTCGGCCGGCTCG
ACCGGATCTTCAACGACGATGCCGGCGATGTCGCCGACGTCGACGGAGCGGACGGGGAGGGCCTCGCGGGCTGA

Upstream 100 bases:

>100_bases
CATCCCAGCGCCAGAGAACGGAAACCCATCCGCACCGGGCAACGCCACCTGCGGCCCGCGTGTGCCTGTCCCGTTCTTCC
GGCAAGGAGCCGACTTCGCC

Downstream 100 bases:

>100_bases
CCGTGTACCCGAATGAACGGGCGACGCCCCGGGATGGCTGTGTACCTTGCAGCGCCCGGGGCGTTTGCCGTCAGGGCACG
GAATGCCTGGGGTACAAAAG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MPTNSDNHPTMSLQQALREHLDRARAGQGLLYPQPEGETKFACDMGDSRYGCAWCDNIEWPDGNPPGRRVMAAGDGAGND
RRKRRRSQGEGALFQRASDGLWVGRADLGWVDGKRSRKTVYGKTEKECREKLTKVQRAAELGVNVTAERRTVAVWLGEWL
DIKEGDGTRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRNALAEAERLDLVAR
NVAKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGS
LMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLR
LHDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIFNDDAGDVADVDGADGEGLAG

Sequences:

>Translated_477_residues
MPTNSDNHPTMSLQQALREHLDRARAGQGLLYPQPEGETKFACDMGDSRYGCAWCDNIEWPDGNPPGRRVMAAGDGAGND
RRKRRRSQGEGALFQRASDGLWVGRADLGWVDGKRSRKTVYGKTEKECREKLTKVQRAAELGVNVTAERRTVAVWLGEWL
DIKEGDGTRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRNALAEAERLDLVAR
NVAKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGS
LMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLR
LHDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIFNDDAGDVADVDGADGEGLAG
>Mature_476_residues
PTNSDNHPTMSLQQALREHLDRARAGQGLLYPQPEGETKFACDMGDSRYGCAWCDNIEWPDGNPPGRRVMAAGDGAGNDR
RKRRRSQGEGALFQRASDGLWVGRADLGWVDGKRSRKTVYGKTEKECREKLTKVQRAAELGVNVTAERRTVAVWLGEWLD
IKEGDGTRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRNALAEAERLDLVARN
VAKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGSL
MFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRL
HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIFNDDAGDVADVDGADGEGLAG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 53144; Mature: 53013

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTNSDNHPTMSLQQALREHLDRARAGQGLLYPQPEGETKFACDMGDSRYGCAWCDNIEW
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCC
PDGNPPGRRVMAAGDGAGNDRRKRRRSQGEGALFQRASDGLWVGRADLGWVDGKRSRKTV
CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCC
YGKTEKECREKLTKVQRAAELGVNVTAERRTVAVWLGEWLDIKEGDGTRASTLRAYRWLI
CCCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEECCCEECCCCCCCHHHHHHHHHHHH
NMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRNALAEAERLDLVAR
HHHHEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NVAKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSD
HHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECC
VDLDGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLG
CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLHDLRHAFASMLFAEGVPAR
CHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHH
TVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIFNDDAGDVADVDGADGEGLAG
HHHHHHCCCEEEEEECHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTNSDNHPTMSLQQALREHLDRARAGQGLLYPQPEGETKFACDMGDSRYGCAWCDNIEW
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCC
PDGNPPGRRVMAAGDGAGNDRRKRRRSQGEGALFQRASDGLWVGRADLGWVDGKRSRKTV
CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCC
YGKTEKECREKLTKVQRAAELGVNVTAERRTVAVWLGEWLDIKEGDGTRASTLRAYRWLI
CCCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEECCCEECCCCCCCHHHHHHHHHHHH
NMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRNALAEAERLDLVAR
HHHHEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
NVAKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSD
HHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECC
VDLDGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLG
CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLHDLRHAFASMLFAEGVPAR
CHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHH
TVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIFNDDAGDVADVDGADGEGLAG
HHHHHHCCCEEEEEECHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]