| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yhhW [C]
Identifier: 158317260
GI number: 158317260
Start: 6671384
End: 6672352
Strand: Reverse
Name: yhhW [C]
Synonym: Franean1_5507
Alternate gene names: 158317260
Gene position: 6672352-6671384 (Counterclockwise)
Preceding gene: 158317264
Following gene: 158317259
Centisome position: 74.29
GC content: 72.03
Gene sequence:
>969_bases ATGCCAGCCGTCACCGCCGACGCCCTCACGCTGCCGAGGCTGTCCGCGCCGGGTCTCGGCGATGTCGAGCGCCCGGTGAA GAAGGTCGTCACCGCTCCGTCCGGGCTGGAGGGGGAGGGGTTCCCCGTCCGCCGGATGTTCGCCGGGGTGAGCCTGGCCG ACCGCGACCCCTTCGTCCACGCCGACCAGATGGGCGAGATCGACTACGCGCCCGGTGAGCCGAAGGGGACGCCGTGGCAC CCGCACCGCGGCTTCGAGACCGTCACCTACATGATCGACGGCACCTTCCAGCACCAGGACTCGCACGGCGGCGGCGGCCT GATCGCCAACGGCGCCACCCAGTGGATGACGGCCGGCTCCGGCATCCTGCACATCGAGACCCCGCCCGAGGCACTCGTCG TCAGCGGCGGCCGGTTCCACGGTGTCCAGCTCTGGGTGAACCTGCCGGCGAAGGACAAGTTCAGCGCGCCCCGCTACCAG AGCATCGAAGGGGAGGAGGTCGCGCTGATCGCCTCCCCGGACGGCGGCAGCCTGGTCCGGATCATCGCCGGTGACGTCGG CGGCTTCCGTGGCCCCGGGTCGACCCACACGCCGATCGCGGTGGTGCACACCACGGTCAGCCCCGGCGCGCGGGTCAGCC TGCCCTGGAACCCCGAGTACAACGCGCTGGTCTACGTCCTGGCCGGTCAGGGCACCGTCGGCGCGGGCGACACGCCCGTG CACCTCGGCCAGACGGCCGTGCTGGGCGCGGGGGACCGCATCATCCTCGCGGCGAGCCCGACCCAGGACTCGCACACCCC GAACCTGGAGGTCCTGCTGCTCGGCGGCCGGCCGATCCGCGAGCACGTCGAGGTGTACGGGCCGTTCGTCATGAACACAA AGGACGAGCTCCGCCAGGCGATCGAGGACTTCCAGGCCGGTCGGCTGGGCGTGATCCCGGAGAACGCCCTGATGCCGCAC CGCGGGTGA
Upstream 100 bases:
>100_bases TTGCATCGGCAACTGTTAGGTCGGGTGGGTGCGAGGTCTCGCCCCGTCGACCGGGCAGGGGTCCGATGAGAGGATCTGCC TGGTTCCGTAGGAGGTCACC
Downstream 100 bases:
>100_bases GCCTGCCGCCTCGTGGCTGAGACTGCCGAGAGCCGGGTCTGAGCCGCCCGGCCCGGGACCGACCACGATTTAACCGAGGA TGCCGGCGGACCGCACCCGG
Product: pirin domain-containing protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein PA2418 [H]
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MPAVTADALTLPRLSAPGLGDVERPVKKVVTAPSGLEGEGFPVRRMFAGVSLADRDPFVHADQMGEIDYAPGEPKGTPWH PHRGFETVTYMIDGTFQHQDSHGGGGLIANGATQWMTAGSGILHIETPPEALVVSGGRFHGVQLWVNLPAKDKFSAPRYQ SIEGEEVALIASPDGGSLVRIIAGDVGGFRGPGSTHTPIAVVHTTVSPGARVSLPWNPEYNALVYVLAGQGTVGAGDTPV HLGQTAVLGAGDRIILAASPTQDSHTPNLEVLLLGGRPIREHVEVYGPFVMNTKDELRQAIEDFQAGRLGVIPENALMPH RG
Sequences:
>Translated_322_residues MPAVTADALTLPRLSAPGLGDVERPVKKVVTAPSGLEGEGFPVRRMFAGVSLADRDPFVHADQMGEIDYAPGEPKGTPWH PHRGFETVTYMIDGTFQHQDSHGGGGLIANGATQWMTAGSGILHIETPPEALVVSGGRFHGVQLWVNLPAKDKFSAPRYQ SIEGEEVALIASPDGGSLVRIIAGDVGGFRGPGSTHTPIAVVHTTVSPGARVSLPWNPEYNALVYVLAGQGTVGAGDTPV HLGQTAVLGAGDRIILAASPTQDSHTPNLEVLLLGGRPIREHVEVYGPFVMNTKDELRQAIEDFQAGRLGVIPENALMPH RG >Mature_321_residues PAVTADALTLPRLSAPGLGDVERPVKKVVTAPSGLEGEGFPVRRMFAGVSLADRDPFVHADQMGEIDYAPGEPKGTPWHP HRGFETVTYMIDGTFQHQDSHGGGGLIANGATQWMTAGSGILHIETPPEALVVSGGRFHGVQLWVNLPAKDKFSAPRYQS IEGEEVALIASPDGGSLVRIIAGDVGGFRGPGSTHTPIAVVHTTVSPGARVSLPWNPEYNALVYVLAGQGTVGAGDTPVH LGQTAVLGAGDRIILAASPTQDSHTPNLEVLLLGGRPIREHVEVYGPFVMNTKDELRQAIEDFQAGRLGVIPENALMPHR G
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=277, Percent_Identity=38.2671480144404, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI4505823, Length=277, Percent_Identity=38.2671480144404, Blast_Score=167, Evalue=1e-41, Organism=Escherichia coli, GI1789847, Length=103, Percent_Identity=33.9805825242718, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR008778 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin; PF05726 Pirin_C [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 33960; Mature: 33829
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAVTADALTLPRLSAPGLGDVERPVKKVVTAPSGLEGEGFPVRRMFAGVSLADRDPFVH CCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEECCCCCEE ADQMGEIDYAPGEPKGTPWHPHRGFETVTYMIDGTFQHQDSHGGGGLIANGATQWMTAGS CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCCEEEECCCCEEEECCC GILHIETPPEALVVSGGRFHGVQLWVNLPAKDKFSAPRYQSIEGEEVALIASPDGGSLVR CEEEEECCCCEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEE IIAGDVGGFRGPGSTHTPIAVVHTTVSPGARVSLPWNPEYNALVYVLAGQGTVGAGDTPV EEECCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCE HLGQTAVLGAGDRIILAASPTQDSHTPNLEVLLLGGRPIREHVEVYGPFVMNTKDELRQA ECCCEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHCCEEECCHHHHHHH IEDFQAGRLGVIPENALMPHRG HHHHCCCCEECCCCCCCCCCCC >Mature Secondary Structure PAVTADALTLPRLSAPGLGDVERPVKKVVTAPSGLEGEGFPVRRMFAGVSLADRDPFVH CCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEECCCCCEE ADQMGEIDYAPGEPKGTPWHPHRGFETVTYMIDGTFQHQDSHGGGGLIANGATQWMTAGS CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCCEEEECCCCEEEECCC GILHIETPPEALVVSGGRFHGVQLWVNLPAKDKFSAPRYQSIEGEEVALIASPDGGSLVR CEEEEECCCCEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEE IIAGDVGGFRGPGSTHTPIAVVHTTVSPGARVSLPWNPEYNALVYVLAGQGTVGAGDTPV EEECCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCE HLGQTAVLGAGDRIILAASPTQDSHTPNLEVLLLGGRPIREHVEVYGPFVMNTKDELRQA ECCCEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHCCEEECCHHHHHHH IEDFQAGRLGVIPENALMPHRG HHHHCCCCEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]