| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ygfF [C]
Identifier: 158317140
GI number: 158317140
Start: 6495142
End: 6495900
Strand: Direct
Name: ygfF [C]
Synonym: Franean1_5386
Alternate gene names: 158317140
Gene position: 6495142-6495900 (Clockwise)
Preceding gene: 158317139
Following gene: 158317141
Centisome position: 72.31
GC content: 66.67
Gene sequence:
>759_bases GTGATCACTGGCGCCGGGTCGGGCGTCGGCCGCGCCTCGGCCCTGCGGTTCGCCAAAGAGGGTGCGCTCGTCGTCTGCAC TGACATTCGGCTCCAGTGGGCGAAGGAGACCGTGCGCCAGATCGAGGCTGCTGGCGGCGTCGCCATCCCGCAGGAATGCG ACGTGGCATCTGAACAGGACGTCGCCGCGACGGTCGCCGCGGCCGTCGAGCGGTTCGGCCGGCTCGACATCATGTTCAAC AATGCCGGCATTCCAGCGCCCCGCCGCGGCAAGACGATCGAGGACCACACTATCGAGGAGTTCGAGCGCATCACGTCGGT CAACCTCCGTGGGGTGTTCCTCGGCTGCAAGTACGCGGTGGCGCAGTTCAAGAAGCAAGGCGACGGCGGCGTCATTCTCA ACACCGGGTCGGTAGCCGGGCTGGTCGGCCTGGGCGACACGATATACGGAGCGACGAAGGGTGGCGTGCACCAGCTGACC CGCGGCGTCGCCATCGAATGCGCACCCTTCGGCATCCGAGTCAACGCGATCTGCCCCTCCGGCATGCCGTACACCACCAA TTTCACGGCGGCAGGCGGAACAGAGGTTCCGCCCGACGCCCTCGAGCAGTACGCCGAGCGGGTCGGGTCAATCCATCCGC TGGGCAAGCCGATCAGGGCGGAGGACTGCGCCGAGGCGGCGGTGTACCTGGTGTCGGACCGGGCGGCGAATATCACAGGT GTGTTGTTACCGGTCGACGGAGGTTATGTAGCGAGATGA
Upstream 100 bases:
>100_bases TTGATGTGATTCGCGTTGCGGCAGAAGGGTGCCCGACCGCCGCAATCCAGCTCGCGCCAAACGATGGGATGTGACGGTGT TACTCGAAAGGAAGAGCGCG
Downstream 100 bases:
>100_bases CCAGACCAGATAGCATTGTGTTGCTTGACCGGGCGCGTTTGCGCGAGGTTTTCGATCTCCGCAATGAAGCGAACCTCGGC ACGGTCGCGGGCTATGAGGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MITGAGSGVGRASALRFAKEGALVVCTDIRLQWAKETVRQIEAAGGVAIPQECDVASEQDVAATVAAAVERFGRLDIMFN NAGIPAPRRGKTIEDHTIEEFERITSVNLRGVFLGCKYAVAQFKKQGDGGVILNTGSVAGLVGLGDTIYGATKGGVHQLT RGVAIECAPFGIRVNAICPSGMPYTTNFTAAGGTEVPPDALEQYAERVGSIHPLGKPIRAEDCAEAAVYLVSDRAANITG VLLPVDGGYVAR
Sequences:
>Translated_252_residues MITGAGSGVGRASALRFAKEGALVVCTDIRLQWAKETVRQIEAAGGVAIPQECDVASEQDVAATVAAAVERFGRLDIMFN NAGIPAPRRGKTIEDHTIEEFERITSVNLRGVFLGCKYAVAQFKKQGDGGVILNTGSVAGLVGLGDTIYGATKGGVHQLT RGVAIECAPFGIRVNAICPSGMPYTTNFTAAGGTEVPPDALEQYAERVGSIHPLGKPIRAEDCAEAAVYLVSDRAANITG VLLPVDGGYVAR >Mature_252_residues MITGAGSGVGRASALRFAKEGALVVCTDIRLQWAKETVRQIEAAGGVAIPQECDVASEQDVAATVAAAVERFGRLDIMFN NAGIPAPRRGKTIEDHTIEEFERITSVNLRGVFLGCKYAVAQFKKQGDGGVILNTGSVAGLVGLGDTIYGATKGGVHQLT RGVAIECAPFGIRVNAICPSGMPYTTNFTAAGGTEVPPDALEQYAERVGSIHPLGKPIRAEDCAEAAVYLVSDRAANITG VLLPVDGGYVAR
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=34.6733668341709, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=32.1705426356589, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=33.4677419354839, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=33.4862385321101, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI4504505, Length=235, Percent_Identity=34.468085106383, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI83715985, Length=224, Percent_Identity=32.5892857142857, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=30.952380952381, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=34.8958333333333, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=29.6442687747036, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=26.7175572519084, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI66933014, Length=239, Percent_Identity=30.5439330543933, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI224922801, Length=180, Percent_Identity=34.4444444444444, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=30.078125, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI109715829, Length=238, Percent_Identity=27.3109243697479, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI40254986, Length=203, Percent_Identity=32.0197044334975, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI310128830, Length=146, Percent_Identity=32.1917808219178, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI310115468, Length=146, Percent_Identity=32.1917808219178, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI126723191, Length=177, Percent_Identity=29.3785310734463, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI210032110, Length=202, Percent_Identity=26.7326732673267, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=31.3186813186813, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI40807363, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI4503817, Length=185, Percent_Identity=27.5675675675676, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=37.5494071146245, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=33.8645418326693, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788459, Length=260, Percent_Identity=31.5384615384615, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=31.2252964426877, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=29.8804780876494, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=30.1587301587302, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=31.4741035856574, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=33.6, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=30.0395256916996, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=29.0196078431373, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.957528957529, Blast_Score=78, Evalue=5e-16, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=33.7301587301587, Blast_Score=120, Evalue=5e-28, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=32.8063241106719, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=33.5820895522388, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=32.319391634981, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=31.2977099236641, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=32.6923076923077, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=33.4615384615385, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.1526717557252, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=31.203007518797, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=30.5882352941176, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=31.1538461538462, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=30.4, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=29.277566539924, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17544670, Length=255, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=31.0344827586207, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=29.6442687747036, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=32.5757575757576, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17564282, Length=183, Percent_Identity=33.879781420765, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=29.4573643410853, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=29.9242424242424, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17538182, Length=191, Percent_Identity=33.5078534031414, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=29.7709923664122, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=26.8774703557312, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=28.6852589641434, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17508895, Length=207, Percent_Identity=31.4009661835749, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=32.2751322751323, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=28.7937743190661, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=31.0526315789474, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203115, Length=238, Percent_Identity=27.3109243697479, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203117, Length=238, Percent_Identity=27.3109243697479, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=29.3436293436293, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=28.0769230769231, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71997099, Length=269, Percent_Identity=25.6505576208178, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558628, Length=205, Percent_Identity=33.1707317073171, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=25.296442687747, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17567345, Length=143, Percent_Identity=31.4685314685315, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=213, Percent_Identity=32.8638497652582, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6324126, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=35.6, Blast_Score=136, Evalue=1e-32, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=35.8565737051793, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=34.9019607843137, Blast_Score=127, Evalue=8e-30, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=35.7142857142857, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=33.8645418326693, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI17737361, Length=188, Percent_Identity=32.9787234042553, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=35.2631578947368, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=29.0836653386454, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644337, Length=197, Percent_Identity=30.9644670050761, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=27.1317829457364, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357673, Length=189, Percent_Identity=32.8042328042328, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24640492, Length=157, Percent_Identity=28.6624203821656, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26260; Mature: 26260
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITGAGSGVGRASALRFAKEGALVVCTDIRLQWAKETVRQIEAAGGVAIPQECDVASEQD CCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH VAATVAAAVERFGRLDIMFNNAGIPAPRRGKTIEDHTIEEFERITSVNLRGVFLGCKYAV HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHH AQFKKQGDGGVILNTGSVAGLVGLGDTIYGATKGGVHQLTRGVAIECAPFGIRVNAICPS HHHHHCCCCCEEEECCCEEEEEECCCHHCCCCCCCHHHHHCCCEEEEECCCEEEEEECCC GMPYTTNFTAAGGTEVPPDALEQYAERVGSIHPLGKPIRAEDCAEAAVYLVSDRAANITG CCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEEEEEECCCCCEEE VLLPVDGGYVAR EEEECCCCCCCC >Mature Secondary Structure MITGAGSGVGRASALRFAKEGALVVCTDIRLQWAKETVRQIEAAGGVAIPQECDVASEQD CCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH VAATVAAAVERFGRLDIMFNNAGIPAPRRGKTIEDHTIEEFERITSVNLRGVFLGCKYAV HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHH AQFKKQGDGGVILNTGSVAGLVGLGDTIYGATKGGVHQLTRGVAIECAPFGIRVNAICPS HHHHHCCCCCEEEECCCEEEEEECCCHHCCCCCCCHHHHHCCCEEEEECCCEEEEEECCC GMPYTTNFTAAGGTEVPPDALEQYAERVGSIHPLGKPIRAEDCAEAAVYLVSDRAANITG CCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEEEEEECCCCCEEE VLLPVDGGYVAR EEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]