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The map label for this gene is 158317109

Identifier: 158317109

GI number: 158317109

Start: 6456611

End: 6457444

Strand: Reverse

Name: 158317109

Synonym: Franean1_5353

Alternate gene names: NA

Gene position: 6457444-6456611 (Counterclockwise)

Preceding gene: 158317112

Following gene: 158317108

Centisome position: 71.89

GC content: 68.23

Gene sequence:

>834_bases
ATGCGAAGAAGGGTGTCCCGCGAGGCGTCGGACGCGGAGGATGAAGTGATGGCCCGGCTGTACCGGGACCACCACAGGGT
GCTGTTGTCGTTCATCGGCAAACACGTCGACGACCGCCACCGCGCCGAGGACATCGCGCAGGAGACGCTGTTGCGAGCTT
GGCGCAATCGCGACTCGCTCCGGCCCGACGGAGTTCGCTCGTACCTGTTCACGATCGCCAGAAACGTCATCACCGACGCC
TGGCGGGCCGAGCGGCGACGGCCGTCACTCGGCGACGACGGCGGCGAGGTCGTGGCGGCCGCCCCCGCCGTCGACGACGT
GAGCCAGGCCATCGAGGAGTGGGTGGTCGCGGAGGCGCTAGGTCGTATTTCGCTCGCGCACCGGGCTGTCGTCCAAGAGC
TGTACTACGAGGGAAGGTCGGTACGCGAGGCGGCAGCCCGCCTGGCACTGCCAGAGGGCACCGTCAAGTCCCGTGTCTAC
TATGCGATCCGCGCGCTGCGTGACGCCTTCGAGGAGATGACGGTCGGTTCGCCGAACCCGCTCCCGGCGCCTCGCGGCGG
TCGCTGCTGTGCTCGTCCTGTGCGCCGGAATCGGTCTCGTCGTGAACAGTCCCTTTGCCAGCGCACCGAGTGGGCCCTCC
ACCTCCTTCGTCGCCGCGACGGGCACGGCGATCACTGGTCGCGCCACGCTCATCACGAAACCATGGGGAATGTCGCTGGC
CGTCGCGTTCGACAGCCTTCCTGGCAGCGGCCCCTTCGCACTGGAGGTCGCCAGCGTCGACGGCATGACGGAACGAGCGT
CCAGCTGGTCGTCGACGCAGGCAACGAAGGCTGA

Upstream 100 bases:

>100_bases
ACTCCGGCGAACGGTTGAACCGAATTGAGTCGGCCGTCGTACACCCGGAACAGGCAGCGACAGCCGTCCTCCGTCAGGGG
CGTCGTCAGTCAGGGGTGTC

Downstream 100 bases:

>100_bases
TGTCGTCGGAGCGAGTTCGATCCCAGCGGATGCCATCGACGCGGTTCGAGTCGTCGACCGTGACGGCTTGGTGCTCGCCG
TCGCTCACCCGCGGGGCAGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase; AlteRNAtive RNA Polymerase Sigma Factor SigL; Sigma-70 Region 2 Domain-Containing Protein; DNA-Directed RNA Polymerase Sigma Subunit; Sigma Factor Sigma; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MRRRVSREASDAEDEVMARLYRDHHRVLLSFIGKHVDDRHRAEDIAQETLLRAWRNRDSLRPDGVRSYLFTIARNVITDA
WRAERRRPSLGDDGGEVVAAAPAVDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVREAAARLALPEGTVKSRVY
YAIRALRDAFEEMTVGSPNPLPAPRGGRCCARPVRRNRSRREQSLCQRTEWALHLLRRRDGHGDHWSRHAHHETMGNVAG
RRVRQPSWQRPLRTGGRQRRRHDGTSVQLVVDAGNEG

Sequences:

>Translated_277_residues
MRRRVSREASDAEDEVMARLYRDHHRVLLSFIGKHVDDRHRAEDIAQETLLRAWRNRDSLRPDGVRSYLFTIARNVITDA
WRAERRRPSLGDDGGEVVAAAPAVDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVREAAARLALPEGTVKSRVY
YAIRALRDAFEEMTVGSPNPLPAPRGGRCCARPVRRNRSRREQSLCQRTEWALHLLRRRDGHGDHWSRHAHHETMGNVAG
RRVRQPSWQRPLRTGGRQRRRHDGTSVQLVVDAGNEG
>Mature_277_residues
MRRRVSREASDAEDEVMARLYRDHHRVLLSFIGKHVDDRHRAEDIAQETLLRAWRNRDSLRPDGVRSYLFTIARNVITDA
WRAERRRPSLGDDGGEVVAAAPAVDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVREAAARLALPEGTVKSRVY
YAIRALRDAFEEMTVGSPNPLPAPRGGRCCARPVRRNRSRREQSLCQRTEWALHLLRRRDGHGDHWSRHAHHETMGNVAG
RRVRQPSWQRPLRTGGRQRRRHDGTSVQLVVDAGNEG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31701; Mature: 31701

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCCCHHHHCHHHHHHCCCCEEEEEEECCCCC
>Mature Secondary Structure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HHHCCCCCCCHHHHCHHHHHHCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA