| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317007
Identifier: 158317007
GI number: 158317007
Start: 6312857
End: 6313795
Strand: Reverse
Name: 158317007
Synonym: Franean1_5251
Alternate gene names: NA
Gene position: 6313795-6312857 (Counterclockwise)
Preceding gene: 158317008
Following gene: 158317005
Centisome position: 70.29
GC content: 77.96
Gene sequence:
>939_bases GTGACACCTCCGAGTCCGGCCGTTCACGACGTGCCGGCGATCGGTGGCCTCGGGATGACCGACGTCGCCCGGCAGACCGT CGCCCGGCAGGCCGGTGCCGGCGGGGCCCAGTCGGCCGCTGAGCCGCCTTGGCCGGCGTGCTCCGGTGTGGATCTCACCC GTCCCCATGCCGCCGTGGTGCTGCACTACGACGGCGCCCGCCGCGACGCGTGGGGCGCCGCCCTGGCCGCGCTCGACGTC CCGGTGCGCCGGGACGGGGCGTTCGGCGAGCTCGGGTGGGCGGTCCTGGCAGGTGACGCCGCCGACGTCGGCCGGGAGCT GGCCGCGGTGCGATCCCGTCTGGCCGCTGCCGTCGGATCGGACCGGCCGGTGCTCGCCGCCGCCGGGCGGGTGGTCGTCG GCGACGGCCGGGACACCTCCGAGACGGCATCGTCGCTCGCCGAGGCACGGGCCGTGCTCGCGCTGCTGCGCCATCGCGGC GACGGCGTGCAGCTCCTGCACTCGGACACCGGGCTGGCCGGGCTGCTGCTGGCCGTCCCGCGGGCGCGGCTGGAGTCGTT CGCCCGGGCCGAGCTCGGGCCGCTGCTGGACCGGCCCGAGCTGCTGGCCACGCTCGCCGCCTGGCTGGAGACGAATGGCA GCCGGGCCGCGGTCGCCGCGCGCATCCACATGCACCGCAACTCGGTCGGCTACCGGATGGACCGGGTCCGCGAGCTCCTG GGCCTGCACGGGGACCCACCGGAGCGGATGTGGCGGTTGCACGCCGCCGTCGTCGCCCGCGAGCTGGTGGCGGCGCTTCC GGCCGGTGACGCCTTCCCGACCGGGGACCTTCCCGACGGCCGGGCTGGCCTGGCCGGGGCGGTCGGGCTGGCCGGCTACC CGCGGGTCAGCGCGGCGTCCACGAGGGCCTGCGCCTCGGCGAGCACCGAGGCCAGGTGA
Upstream 100 bases:
>100_bases CGGGCACCCGATGATCGCCTGGTTGTGGGGGATTCGTCACCGCGCGTCGAGAGCCGCCATCGCGGGGATCCTGCGGACCC CCGAAAGGACGTGACGCCAG
Downstream 100 bases:
>100_bases TCCGGGCCGGCGAAGCTCTCGGCGTAGATCTTGTAGACGTCCTCGGTGCCGGACGGGCGCGCGGCGAACCACGCGTCGGC CGTCGCCACCTTCACGCCGC
Product: PucR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTPPSPAVHDVPAIGGLGMTDVARQTVARQAGAGGAQSAAEPPWPACSGVDLTRPHAAVVLHYDGARRDAWGAALAALDV PVRRDGAFGELGWAVLAGDAADVGRELAAVRSRLAAAVGSDRPVLAAAGRVVVGDGRDTSETASSLAEARAVLALLRHRG DGVQLLHSDTGLAGLLLAVPRARLESFARAELGPLLDRPELLATLAAWLETNGSRAAVAARIHMHRNSVGYRMDRVRELL GLHGDPPERMWRLHAAVVARELVAALPAGDAFPTGDLPDGRAGLAGAVGLAGYPRVSAASTRACASASTEAR
Sequences:
>Translated_312_residues MTPPSPAVHDVPAIGGLGMTDVARQTVARQAGAGGAQSAAEPPWPACSGVDLTRPHAAVVLHYDGARRDAWGAALAALDV PVRRDGAFGELGWAVLAGDAADVGRELAAVRSRLAAAVGSDRPVLAAAGRVVVGDGRDTSETASSLAEARAVLALLRHRG DGVQLLHSDTGLAGLLLAVPRARLESFARAELGPLLDRPELLATLAAWLETNGSRAAVAARIHMHRNSVGYRMDRVRELL GLHGDPPERMWRLHAAVVARELVAALPAGDAFPTGDLPDGRAGLAGAVGLAGYPRVSAASTRACASASTEAR >Mature_311_residues TPPSPAVHDVPAIGGLGMTDVARQTVARQAGAGGAQSAAEPPWPACSGVDLTRPHAAVVLHYDGARRDAWGAALAALDVP VRRDGAFGELGWAVLAGDAADVGRELAAVRSRLAAAVGSDRPVLAAAGRVVVGDGRDTSETASSLAEARAVLALLRHRGD GVQLLHSDTGLAGLLLAVPRARLESFARAELGPLLDRPELLATLAAWLETNGSRAAVAARIHMHRNSVGYRMDRVRELLG LHGDPPERMWRLHAAVVARELVAALPAGDAFPTGDLPDGRAGLAGAVGLAGYPRVSAASTRACASASTEAR
Specific function: Unknown
COG id: COG2508
COG function: function code TQ; Regulator of polyketide synthase expression
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32053; Mature: 31921
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPSPAVHDVPAIGGLGMTDVARQTVARQAGAGGAQSAAEPPWPACSGVDLTRPHAAVV CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE LHYDGARRDAWGAALAALDVPVRRDGAFGELGWAVLAGDAADVGRELAAVRSRLAAAVGS EEECCCCCHHHHHHHHHHCCCCCCCCCCCHHCHHEEECCHHHHHHHHHHHHHHHHHHHCC DRPVLAAAGRVVVGDGRDTSETASSLAEARAVLALLRHRGDGVQLLHSDTGLAGLLLAVP CCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH RARLESFARAELGPLLDRPELLATLAAWLETNGSRAAVAARIHMHRNSVGYRMDRVRELL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH GLHGDPPERMWRLHAAVVARELVAALPAGDAFPTGDLPDGRAGLAGAVGLAGYPRVSAAS CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHH TRACASASTEAR HHHHHCCCCCCC >Mature Secondary Structure TPPSPAVHDVPAIGGLGMTDVARQTVARQAGAGGAQSAAEPPWPACSGVDLTRPHAAVV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE LHYDGARRDAWGAALAALDVPVRRDGAFGELGWAVLAGDAADVGRELAAVRSRLAAAVGS EEECCCCCHHHHHHHHHHCCCCCCCCCCCHHCHHEEECCHHHHHHHHHHHHHHHHHHHCC DRPVLAAAGRVVVGDGRDTSETASSLAEARAVLALLRHRGDGVQLLHSDTGLAGLLLAVP CCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH RARLESFARAELGPLLDRPELLATLAAWLETNGSRAAVAARIHMHRNSVGYRMDRVRELL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH GLHGDPPERMWRLHAAVVARELVAALPAGDAFPTGDLPDGRAGLAGAVGLAGYPRVSAAS CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHH TRACASASTEAR HHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA