| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yvdB [H]
Identifier: 158316982
GI number: 158316982
Start: 6274819
End: 6277422
Strand: Reverse
Name: yvdB [H]
Synonym: Franean1_5226
Alternate gene names: 158316982
Gene position: 6277422-6274819 (Counterclockwise)
Preceding gene: 158316984
Following gene: 158316981
Centisome position: 69.89
GC content: 74.88
Gene sequence:
>2604_bases GTGCACGCCGAGCACCACGAGCCAAGAAAACAGCCGTCGTCGGTGACGCCTGCCCCGACCGCGCTGCCTTACCCGTCCGA GCCCGACACGGACCGCGCGAAGATCCCAGACCACGCGGACAGCCCGGGCCACACCGAGAACCCGGACCACCCGGAGAAGC CGGACCGCCTTCCGGGCCGCCGCCCGTGGCGCCGCGCCCGGCGCGCGCCAGCCAGCCCCGCCGCTGACAGCTCCGACAAC CCCGCCTCCGACAACCCCCCCTCCGGCGGCGCCGCCCGGCACGACCCCGACGGCACCGGCCGTCCCGGGTCCGGCGGCTC GGCCGGCCGCACCCTCCGGGGAGCCTGGCGCCACGACCTGGAGGCGTCCGTCGTCGTCTTCCTGGTGGCGCTTCCGCTCT CGCTGGGCATCGCGGTCGCCTCGGGCGCCCCGGTGGTCGCCGGCATCATCGCGGCGGTCGTCGGTGGAGTCGTCGCCGGC GCCGTCGGCGGAGTCCCGCTGCAGGTCTCCGGCCCGGCGGCCGGCCTCACCGCCGTGGTGGCCGAGATCGTCGCCACGCA CGGCTGGCGGGTCGCCTGTTTCGTCACCGCCGCCGCGGGCGTGGTGCAGATCCTTTTCGGCCTGAGCCGGGTCGCCCGCG CGGCCCTGGCCATCTCACCCGCGGTCGTGCACGGCATGCTCGCCGGCATCGGCCTGACCATCGTCATCGGGCAGATCCAC GTCGTGCTCGGCGGTACCGCCGGCTCGGCCGCCTGGGACAACCTGATCGTCCTGCCCGGCGAGATCGTGTCGCCGGCCGT CCCGGCGGCGGCGCTGCTCGGCATCGCCGCCATCGCGCTGACCGTGGTGTGGACGCGGCTGCCCCGGCCGTTGTCGTCCA TACCGGCACCGCTGGCCGCGGTGTCGATCGTGACCGCGGCATCGCTTCCGTTCGACGTCCCGCGGGTCGCCCTGCCCGAC GACCTGCTGGGCGCGATCGCCCTGCCCGAGCTGCCCGCCGGCGGTGAATGGGGCGCGATCACGCTGGCCGTGCTGACGGT CGCCCTGGTCGCGAGCATCGAGTCGCTGCTGTCGGCGGTCGCCGTCGAGGCGATGCACTCCGGCCCGCGTGGCGACCTCG ACCGCGAACTGCTCGGCCAGGGCGCCGCGAACACGGTCTCCGGCCTGCTCGGCGGGCTGCCGGTCACCGGCGTCATCGTC CGCAGCTCGACGAACGTCCGCGCCGGTGCCCGCACCCGCGCCTCGGCGATCCTGCACGGCCTGTGGATGGCCGGTTTCGC GCTGCTGCTGGCGCCGCTGGTCGGGCGCATCCCGCTCGCCGTGCTCGCCGGCCTGCTGGTCGTGATCGGCATCCGCCTCG TCGACCTCGCGCACATCCGCGCGATCGCCCGCCACGGCGAGCTCGCGATCTACCTGACGACGGTCGTCGGCGTGGTGCTG TTCAACCTGCTTGAGGGCGTCCTGATCGGGATCGCCACCGCACTGCTGCTCGCCCTGCGCCGGACGCTGGTGGCGCCGGT CCACGTGCACCCGCCCACCGGCCCTGGCTCGCCGTGGCGGGTCGTCGTCGAGGGCGCGCTGACCTTCCTCTCCCTGCCCA GGCTGTCCCGCCGGCTCGCCGAGGTGCCCGCCGGGGCGTCCGTCCGGCTCGACCTGGCGGTCGACTACCTCGACCACGGC GCGCACAAGATGCTGGACGACTGGATCGCCGAGCGGCATCGCGCCGGTGCCACTGTGACCGTCGACGAGGTGGGGGCCGC ACCGCTGGCCATCCCCACCGTCGCGGCCCGGCCCCGCGAGGGACGACTCTCCAAGAGCCTCTTCGGGGGGCGTTCCACCG GCCGGCACGCCCGGTCGGCGCGGCCGCCGCGCTGGCTCGCCCCCTGGTCGGACTGGCAGCACGGCCAGCTCCACGACCGC CAGCACCTGCTCAACGGCGTGGACGAGTTCCACCGCCGGACGGCCCCGATGATCGAGCCGTTCCTCACCGAGCTGACCTC GGGGCAGCGGCCGTCGACCCTGTTCATCACATGCAGCGACTCGCGGCTCGTGCCGAACGTGATCACGAGCAGCGGCCCGG GGGACCTGTTCACCGTGCGCACGCCGGGCGCGTTCGTCCCCGGTCCGCAGGCGGTCGGTGACTCGACCCTGGCCGCGATC GAGTACGCCGTCGAGGTGCTCCGCGTACGGACCATCGCCGTCTGCGGACATTCCGGATGCGGTGCGGTCGCCGCCCTGCT CGACCGGGGCACACCCGGCCACAGCGGCTCCATCGTGGGCCCGCTGCGCAACCTGGAGGCCTGGCTGCGCCACGGCGAAC CGGCCCTGGCCCGCGCGGCCCGTGACGCCGGTGGCCTTCCACCGGAGCCCGACGAGTTGAGCCGGGTCAGCGTCGCGCAG CAGCTCGTCGCGCTGCGCGGGCTGTCCGTGGTGCGCCGCGCCGAGGCCGAAGGCCGGCTGCAGCTGGTCGGCATGTGGTT CGACATCGCCACGGCGCGCGCGATCGTCCTGAACGAGTCGACCGACCGGTTCGAGATCCCGACCGTCAGCGTCGTCCCGG CGTTGGAGAGCGGACAGCGCCTGGCCGACGCCACCCGGGGCTGA
Upstream 100 bases:
>100_bases GTTCCGGGTTCTGGTCACGTAACGTGTTCGAACCTGTACCACTCAACATCGAGAATAGATGGCCTGACGCTGACGTTGCG CCCTCGCCGAGGAGACGATC
Downstream 100 bases:
>100_bases CCCGTCGGTCGGCCCCACCCCGAGCACGGCGCAGGTGACGGCGGGCAGCACCCGACCCGCCGCCACCCCGCCTGCCGTCT CGCCCAGCTCCGGCCTCGAC
Product: carbonate dehydratase
Products: CO2; H2O. [C]
Alternate protein names: NA
Number of amino acids: Translated: 867; Mature: 867
Protein sequence:
>867_residues MHAEHHEPRKQPSSVTPAPTALPYPSEPDTDRAKIPDHADSPGHTENPDHPEKPDRLPGRRPWRRARRAPASPAADSSDN PASDNPPSGGAARHDPDGTGRPGSGGSAGRTLRGAWRHDLEASVVVFLVALPLSLGIAVASGAPVVAGIIAAVVGGVVAG AVGGVPLQVSGPAAGLTAVVAEIVATHGWRVACFVTAAAGVVQILFGLSRVARAALAISPAVVHGMLAGIGLTIVIGQIH VVLGGTAGSAAWDNLIVLPGEIVSPAVPAAALLGIAAIALTVVWTRLPRPLSSIPAPLAAVSIVTAASLPFDVPRVALPD DLLGAIALPELPAGGEWGAITLAVLTVALVASIESLLSAVAVEAMHSGPRGDLDRELLGQGAANTVSGLLGGLPVTGVIV RSSTNVRAGARTRASAILHGLWMAGFALLLAPLVGRIPLAVLAGLLVVIGIRLVDLAHIRAIARHGELAIYLTTVVGVVL FNLLEGVLIGIATALLLALRRTLVAPVHVHPPTGPGSPWRVVVEGALTFLSLPRLSRRLAEVPAGASVRLDLAVDYLDHG AHKMLDDWIAERHRAGATVTVDEVGAAPLAIPTVAARPREGRLSKSLFGGRSTGRHARSARPPRWLAPWSDWQHGQLHDR QHLLNGVDEFHRRTAPMIEPFLTELTSGQRPSTLFITCSDSRLVPNVITSSGPGDLFTVRTPGAFVPGPQAVGDSTLAAI EYAVEVLRVRTIAVCGHSGCGAVAALLDRGTPGHSGSIVGPLRNLEAWLRHGEPALARAARDAGGLPPEPDELSRVSVAQ QLVALRGLSVVRRAEAEGRLQLVGMWFDIATARAIVLNESTDRFEIPTVSVVPALESGQRLADATRG
Sequences:
>Translated_867_residues MHAEHHEPRKQPSSVTPAPTALPYPSEPDTDRAKIPDHADSPGHTENPDHPEKPDRLPGRRPWRRARRAPASPAADSSDN PASDNPPSGGAARHDPDGTGRPGSGGSAGRTLRGAWRHDLEASVVVFLVALPLSLGIAVASGAPVVAGIIAAVVGGVVAG AVGGVPLQVSGPAAGLTAVVAEIVATHGWRVACFVTAAAGVVQILFGLSRVARAALAISPAVVHGMLAGIGLTIVIGQIH VVLGGTAGSAAWDNLIVLPGEIVSPAVPAAALLGIAAIALTVVWTRLPRPLSSIPAPLAAVSIVTAASLPFDVPRVALPD DLLGAIALPELPAGGEWGAITLAVLTVALVASIESLLSAVAVEAMHSGPRGDLDRELLGQGAANTVSGLLGGLPVTGVIV RSSTNVRAGARTRASAILHGLWMAGFALLLAPLVGRIPLAVLAGLLVVIGIRLVDLAHIRAIARHGELAIYLTTVVGVVL FNLLEGVLIGIATALLLALRRTLVAPVHVHPPTGPGSPWRVVVEGALTFLSLPRLSRRLAEVPAGASVRLDLAVDYLDHG AHKMLDDWIAERHRAGATVTVDEVGAAPLAIPTVAARPREGRLSKSLFGGRSTGRHARSARPPRWLAPWSDWQHGQLHDR QHLLNGVDEFHRRTAPMIEPFLTELTSGQRPSTLFITCSDSRLVPNVITSSGPGDLFTVRTPGAFVPGPQAVGDSTLAAI EYAVEVLRVRTIAVCGHSGCGAVAALLDRGTPGHSGSIVGPLRNLEAWLRHGEPALARAARDAGGLPPEPDELSRVSVAQ QLVALRGLSVVRRAEAEGRLQLVGMWFDIATARAIVLNESTDRFEIPTVSVVPALESGQRLADATRG >Mature_867_residues MHAEHHEPRKQPSSVTPAPTALPYPSEPDTDRAKIPDHADSPGHTENPDHPEKPDRLPGRRPWRRARRAPASPAADSSDN PASDNPPSGGAARHDPDGTGRPGSGGSAGRTLRGAWRHDLEASVVVFLVALPLSLGIAVASGAPVVAGIIAAVVGGVVAG AVGGVPLQVSGPAAGLTAVVAEIVATHGWRVACFVTAAAGVVQILFGLSRVARAALAISPAVVHGMLAGIGLTIVIGQIH VVLGGTAGSAAWDNLIVLPGEIVSPAVPAAALLGIAAIALTVVWTRLPRPLSSIPAPLAAVSIVTAASLPFDVPRVALPD DLLGAIALPELPAGGEWGAITLAVLTVALVASIESLLSAVAVEAMHSGPRGDLDRELLGQGAANTVSGLLGGLPVTGVIV RSSTNVRAGARTRASAILHGLWMAGFALLLAPLVGRIPLAVLAGLLVVIGIRLVDLAHIRAIARHGELAIYLTTVVGVVL FNLLEGVLIGIATALLLALRRTLVAPVHVHPPTGPGSPWRVVVEGALTFLSLPRLSRRLAEVPAGASVRLDLAVDYLDHG AHKMLDDWIAERHRAGATVTVDEVGAAPLAIPTVAARPREGRLSKSLFGGRSTGRHARSARPPRWLAPWSDWQHGQLHDR QHLLNGVDEFHRRTAPMIEPFLTELTSGQRPSTLFITCSDSRLVPNVITSSGPGDLFTVRTPGAFVPGPQAVGDSTLAAI EYAVEVLRVRTIAVCGHSGCGAVAALLDRGTPGHSGSIVGPLRNLEAWLRHGEPALARAARDAGGLPPEPDELSRVSVAQ QLVALRGLSVVRRAEAEGRLQLVGMWFDIATARAIVLNESTDRFEIPTVSVVPALESGQRLADATRG
Specific function: Reversible Hydration Of Carbon Dioxide. Carbon Dioxide Formed In The Bicarbonate-Dependent Decomposition Of Cyanate By Cyanase (Cyns) Diffuses Out Of The Cell Faster Than It Would Be Hydrated To Bicarbonate, So The Apparent Function Of This Enzyme Is To C
COG id: COG0659
COG function: function code P; Sulfate permease and related transporters (MFS superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 STAS domain [H]
Homologues:
Organism=Escherichia coli, GI1786534, Length=207, Percent_Identity=37.1980676328502, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI87081859, Length=420, Percent_Identity=29.5238095238095, Blast_Score=115, Evalue=2e-26, Organism=Escherichia coli, GI1786318, Length=168, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115532990, Length=238, Percent_Identity=27.3109243697479, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24645213, Length=234, Percent_Identity=26.4957264957265, Blast_Score=85, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002645 - InterPro: IPR001902 - InterPro: IPR011547 [H]
Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]
EC number: 4.2.1.1 [C]
Molecular weight: Translated: 89684; Mature: 89684
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS00704 PROK_CO2_ANHYDRASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAEHHEPRKQPSSVTPAPTALPYPSEPDTDRAKIPDHADSPGHTENPDHPEKPDRLPGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RPWRRARRAPASPAADSSDNPASDNPPSGGAARHDPDGTGRPGSGGSAGRTLRGAWRHDL CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC EASVVVFLVALPLSLGIAVASGAPVVAGIIAAVVGGVVAGAVGGVPLQVSGPAAGLTAVV HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH AEIVATHGWRVACFVTAAAGVVQILFGLSRVARAALAISPAVVHGMLAGIGLTIVIGQIH HHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE VVLGGTAGSAAWDNLIVLPGEIVSPAVPAAALLGIAAIALTVVWTRLPRPLSSIPAPLAA EEEECCCCCCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHH VSIVTAASLPFDVPRVALPDDLLGAIALPELPAGGEWGAITLAVLTVALVASIESLLSAV HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVEAMHSGPRGDLDRELLGQGAANTVSGLLGGLPVTGVIVRSSTNVRAGARTRASAILHG HHHHHHCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH LWMAGFALLLAPLVGRIPLAVLAGLLVVIGIRLVDLAHIRAIARHGELAIYLTTVVGVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH FNLLEGVLIGIATALLLALRRTLVAPVHVHPPTGPGSPWRVVVEGALTFLSLPRLSRRLA HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EVPAGASVRLDLAVDYLDHGAHKMLDDWIAERHRAGATVTVDEVGAAPLAIPTVAARPRE HCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCEEEHHHCCCCCEECCHHCCCCCC GRLSKSLFGGRSTGRHARSARPPRWLAPWSDWQHGQLHDRQHLLNGVDEFHRRTAPMIEP CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH FLTELTSGQRPSTLFITCSDSRLVPNVITSSGPGDLFTVRTPGAFVPGPQAVGDSTLAAI HHHHHHCCCCCCEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCCCCCCHHCCCHHHHHH EYAVEVLRVRTIAVCGHSGCGAVAALLDRGTPGHSGSIVGPLRNLEAWLRHGEPALARAA HHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH RDAGGLPPEPDELSRVSVAQQLVALRGLSVVRRAEAEGRLQLVGMWFDIATARAIVLNES HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHEEEEEECC TDRFEIPTVSVVPALESGQRLADATRG CCCEECCCEEEECCHHCCCHHHHHCCC >Mature Secondary Structure MHAEHHEPRKQPSSVTPAPTALPYPSEPDTDRAKIPDHADSPGHTENPDHPEKPDRLPGR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RPWRRARRAPASPAADSSDNPASDNPPSGGAARHDPDGTGRPGSGGSAGRTLRGAWRHDL CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC EASVVVFLVALPLSLGIAVASGAPVVAGIIAAVVGGVVAGAVGGVPLQVSGPAAGLTAVV HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH AEIVATHGWRVACFVTAAAGVVQILFGLSRVARAALAISPAVVHGMLAGIGLTIVIGQIH HHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE VVLGGTAGSAAWDNLIVLPGEIVSPAVPAAALLGIAAIALTVVWTRLPRPLSSIPAPLAA EEEECCCCCCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHH VSIVTAASLPFDVPRVALPDDLLGAIALPELPAGGEWGAITLAVLTVALVASIESLLSAV HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVEAMHSGPRGDLDRELLGQGAANTVSGLLGGLPVTGVIVRSSTNVRAGARTRASAILHG HHHHHHCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH LWMAGFALLLAPLVGRIPLAVLAGLLVVIGIRLVDLAHIRAIARHGELAIYLTTVVGVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH FNLLEGVLIGIATALLLALRRTLVAPVHVHPPTGPGSPWRVVVEGALTFLSLPRLSRRLA HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EVPAGASVRLDLAVDYLDHGAHKMLDDWIAERHRAGATVTVDEVGAAPLAIPTVAARPRE HCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCEEEHHHCCCCCEECCHHCCCCCC GRLSKSLFGGRSTGRHARSARPPRWLAPWSDWQHGQLHDRQHLLNGVDEFHRRTAPMIEP CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH FLTELTSGQRPSTLFITCSDSRLVPNVITSSGPGDLFTVRTPGAFVPGPQAVGDSTLAAI HHHHHHCCCCCCEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCCCCCCHHCCCHHHHHH EYAVEVLRVRTIAVCGHSGCGAVAALLDRGTPGHSGSIVGPLRNLEAWLRHGEPALARAA HHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH RDAGGLPPEPDELSRVSVAQQLVALRGLSVVRRAEAEGRLQLVGMWFDIATARAIVLNES HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHEEEEEECC TDRFEIPTVSVVPALESGQRLADATRG CCCEECCCEEEECCHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Br-; Cl-; phosphate [C]
Metal ions: NA
Kcat value (1/min): 7800000 [C]
Specific activity: NA
Km value (mM): 73.8 {H2CO3}} 54.6 {H2CO3}} 48.4 {H2CO3}} 69 {CO2}} 46 {CO2}} 22 {CO2}} 15 {CO2}} 14 {CO2}} 13.4 {CO2}} 11.9 {CO2}} 10 {CO2}} 9.7 {CO2}} 9.4 {CO2}} 9 {CO2}} 8.8 {CO2}} 8 {CO2}} 7.5 {CO2}} 7.1 {CO2}} 6.6 {CO2}} 5.
Substrates: H(2)Co(3) [C]
Specific reaction: H(2)Co(3) = CO2 + H2O. [C]
General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]
Inhibitor: 7, 7-dioxide; ethoxyzolamide; I- pH-values; methazolamide; NaCl; OCN-; SCN-; sulfanilamide; sulfonamides [C]
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]