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The map label for this gene is nodB [H]

Identifier: 158316962

GI number: 158316962

Start: 6251391

End: 6252170

Strand: Direct

Name: nodB [H]

Synonym: Franean1_5206

Alternate gene names: 158316962

Gene position: 6251391-6252170 (Clockwise)

Preceding gene: 158316961

Following gene: 158316963

Centisome position: 69.6

GC content: 77.56

Gene sequence:

>780_bases
ATGATCGCGCGGCCCTCGTCCGGGGACGGTTTCGGGGCCAGGGGCGGTTGCGAGGCCGGGGGCGGGGCGGGCGGGCCGTC
CCGGCGACGGCTGCTGGGGTGGTCGATCGCGGGAGCGGCCGGCCTCACGGCACTCGGCGCGGTCGACCCGGCCCTGGCCG
CCCCCGCGGCGGGCAGGCGGTCGGGCGCGGTGAGCCGGGTCCGCGGCGCGCGGCCCGCGGCGCCGGCGAACGCGATCGCG
CTGACCATCGACGACGGACCGCACCCGGTCTGGACGCCGCGGATCCTGGAGGTGCTGCGTGGCAACGGTGTCCGCGCGAC
CTTCTTCGTCATCGGGGTCCAGGCGAAGGCCCACCCGGAGCTGGTCCGGCGCGTCCTCGCCGAGGGGCACACCGTCGGCA
ACCACTCGCTCGACCATCCGACGCCGTTCGGCGCCGGCTCCGCCGCGACGGTCGCCCGGGAGATCTCCGCGGCCCAGGCG
ATCATCACCGCGGCCGGTGGGATCGCTCCCCGGTACTTCCGGTCGCCCGGCGGGGACTGGCCGCCGGCCGTCCTCGCGGC
CGCGGCCGCGCAGCACCTGACACCGGTCGGCTGGAGCGTCGACCCACGCGACTGGACCCGGCCCGGGGCGGCGTCGATCG
TGCGGTCGCTGACCGGCGCCCGGGCGGGCGACATCCTGCTGTGTCACGACGGCGGCGGCGATCGATCGCAGACCGTCGAG
GCGCTTCGCCAGGTCCTGCCGGCGCTGCGGGCCAGGGGCCTTACCTTCATGCCCCTGTGA

Upstream 100 bases:

>100_bases
GGCGCCGTGAGACCCGGCGTTCGGAACAGTGAAGGGACAACGGGATGAAAGTCAGCCGGACGTGCCGCGTCCGCTCCAGC
CGCAGCGGTGAGGTCTCGCC

Downstream 100 bases:

>100_bases
GACCACACGTTCATGTCCGTCCCCGGGGCGGCCGGCGCCCAGGCGGCCTTCGCCCCGGGTGGGTGGGCCGCTACCGTCGG
GACATGGCGCCCGACTCACC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MIARPSSGDGFGARGGCEAGGGAGGPSRRRLLGWSIAGAAGLTALGAVDPALAAPAAGRRSGAVSRVRGARPAAPANAIA
LTIDDGPHPVWTPRILEVLRGNGVRATFFVIGVQAKAHPELVRRVLAEGHTVGNHSLDHPTPFGAGSAATVAREISAAQA
IITAAGGIAPRYFRSPGGDWPPAVLAAAAAQHLTPVGWSVDPRDWTRPGAASIVRSLTGARAGDILLCHDGGGDRSQTVE
ALRQVLPALRARGLTFMPL

Sequences:

>Translated_259_residues
MIARPSSGDGFGARGGCEAGGGAGGPSRRRLLGWSIAGAAGLTALGAVDPALAAPAAGRRSGAVSRVRGARPAAPANAIA
LTIDDGPHPVWTPRILEVLRGNGVRATFFVIGVQAKAHPELVRRVLAEGHTVGNHSLDHPTPFGAGSAATVAREISAAQA
IITAAGGIAPRYFRSPGGDWPPAVLAAAAAQHLTPVGWSVDPRDWTRPGAASIVRSLTGARAGDILLCHDGGGDRSQTVE
ALRQVLPALRARGLTFMPL
>Mature_259_residues
MIARPSSGDGFGARGGCEAGGGAGGPSRRRLLGWSIAGAAGLTALGAVDPALAAPAAGRRSGAVSRVRGARPAAPANAIA
LTIDDGPHPVWTPRILEVLRGNGVRATFFVIGVQAKAHPELVRRVLAEGHTVGNHSLDHPTPFGAGSAATVAREISAAQA
IITAAGGIAPRYFRSPGGDWPPAVLAAAAAQHLTPVGWSVDPRDWTRPGAASIVRSLTGARAGDILLCHDGGGDRSQTVE
ALRQVLPALRARGLTFMPL

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=163, Percent_Identity=30.6748466257669, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26251; Mature: 26251

Theoretical pI: Translated: 11.89; Mature: 11.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARPSSGDGFGARGGCEAGGGAGGPSRRRLLGWSIAGAAGLTALGAVDPALAAPAAGRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEHHHHHHHHHHHCCCHHHHCCCCCCC
SGAVSRVRGARPAAPANAIALTIDDGPHPVWTPRILEVLRGNGVRATFFVIGVQAKAHPE
CCCHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCHH
LVRRVLAEGHTVGNHSLDHPTPFGAGSAATVAREISAAQAIITAAGGIAPRYFRSPGGDW
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
PPAVLAAAAAQHLTPVGWSVDPRDWTRPGAASIVRSLTGARAGDILLCHDGGGDRSQTVE
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
ALRQVLPALRARGLTFMPL
HHHHHHHHHHHCCCEECCC
>Mature Secondary Structure
MIARPSSGDGFGARGGCEAGGGAGGPSRRRLLGWSIAGAAGLTALGAVDPALAAPAAGRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEHHHHHHHHHHHCCCHHHHCCCCCCC
SGAVSRVRGARPAAPANAIALTIDDGPHPVWTPRILEVLRGNGVRATFFVIGVQAKAHPE
CCCHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCHH
LVRRVLAEGHTVGNHSLDHPTPFGAGSAATVAREISAAQAIITAAGGIAPRYFRSPGGDW
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
PPAVLAAAAAQHLTPVGWSVDPRDWTRPGAASIVRSLTGARAGDILLCHDGGGDRSQTVE
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
ALRQVLPALRARGLTFMPL
HHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]