| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316917
Identifier: 158316917
GI number: 158316917
Start: 6185978
End: 6186793
Strand: Reverse
Name: 158316917
Synonym: Franean1_5161
Alternate gene names: NA
Gene position: 6186793-6185978 (Counterclockwise)
Preceding gene: 158316919
Following gene: 158316916
Centisome position: 68.88
GC content: 75.25
Gene sequence:
>816_bases GTGCGCAGTCGCGACTACGGACACGACGTCCTGGCCCAGCCCGAACGCCGGGCGCCCAGGAAGCCCCGGACGGTCGAGAT CGAGCCGGACCTGGTGGTCGAGGACGCCGACTCGGGCTACTGCGGGGCGGTCGTCGGCGTGGAGGCCGGCGGCGTGATGC TCGAGGACCGCCGCGGGCGCCGTCGGGTCTTCCCCCTCGGCGAGGGCGCCTTTCTCCTCGACGGCGAGCGGGTGACCCTG GCCCGCCCCCGTCCGGCCGCGCCCGCCCGGCCCAGCCGTACCGCCTCGGGATCGATCGCCGTCCCCGGCCTGCCGGCGCG GGTGGCCCGCGCCAGCCGCATCTACGTCGAGGGCCTGCATGACGCCGCGCTGGTCGAGCGGGTGTGGGGCGACGACCTGC GGATCGAGGGCGTCGTCGTCGAGCCGCTGGACGGCGTGGACGACCTGCCGTCGATCGTCGCGAGCTTCCAGCCGGCGGCC GGGCGCCGGCTGGGTGTCCTCGTCGACCATCTCGTGGCGGGGTCGAAGGAGAGCCGCATCGCCGCGTCGGTCGCGGGCGC GCACGTGCTCGTCACCGGGCACCCCTACATCGACATCTGGCAGGCGGTGAAGCCCTCCTCGGTCGGGATCGAAGCCTGGC CGCGGGTGCCGCGCGGGCAGCAGTGGAAGGAAGGCGTCTGCCGGGCGCTGGGGGTCGCCGAGCCGGCCGACATGTGGCGC CGGGTGCTGGGCGCCGTCGACTCGTACGCCGACCTCGAACCGGGCCTGCTCGGGGCCGTCGAGCGGCTGATCGACTTCGT CACCGAGCAACCCTGA
Upstream 100 bases:
>100_bases AGACTGCCCCGCGCCCCGCCCGCGGATTCCGCCCCGCCTGTGGGTGGAGGGCGGCGTGTCGCCGGGAATGCCCGCGCCTG TCCCACTGTAAGTTGCGGGC
Downstream 100 bases:
>100_bases CGAGGTAGTGCCCGGCCGCCGCTGGCCGAGACCGCTGGATGCCTCGACCAGGACCACGCCGCGCCCCGGTCGAGGCCGGC CCCGACGAGTCGGCGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MRSRDYGHDVLAQPERRAPRKPRTVEIEPDLVVEDADSGYCGAVVGVEAGGVMLEDRRGRRRVFPLGEGAFLLDGERVTL ARPRPAAPARPSRTASGSIAVPGLPARVARASRIYVEGLHDAALVERVWGDDLRIEGVVVEPLDGVDDLPSIVASFQPAA GRRLGVLVDHLVAGSKESRIAASVAGAHVLVTGHPYIDIWQAVKPSSVGIEAWPRVPRGQQWKEGVCRALGVAEPADMWR RVLGAVDSYADLEPGLLGAVERLIDFVTEQP
Sequences:
>Translated_271_residues MRSRDYGHDVLAQPERRAPRKPRTVEIEPDLVVEDADSGYCGAVVGVEAGGVMLEDRRGRRRVFPLGEGAFLLDGERVTL ARPRPAAPARPSRTASGSIAVPGLPARVARASRIYVEGLHDAALVERVWGDDLRIEGVVVEPLDGVDDLPSIVASFQPAA GRRLGVLVDHLVAGSKESRIAASVAGAHVLVTGHPYIDIWQAVKPSSVGIEAWPRVPRGQQWKEGVCRALGVAEPADMWR RVLGAVDSYADLEPGLLGAVERLIDFVTEQP >Mature_271_residues MRSRDYGHDVLAQPERRAPRKPRTVEIEPDLVVEDADSGYCGAVVGVEAGGVMLEDRRGRRRVFPLGEGAFLLDGERVTL ARPRPAAPARPSRTASGSIAVPGLPARVARASRIYVEGLHDAALVERVWGDDLRIEGVVVEPLDGVDDLPSIVASFQPAA GRRLGVLVDHLVAGSKESRIAASVAGAHVLVTGHPYIDIWQAVKPSSVGIEAWPRVPRGQQWKEGVCRALGVAEPADMWR RVLGAVDSYADLEPGLLGAVERLIDFVTEQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29158; Mature: 29158
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSRDYGHDVLAQPERRAPRKPRTVEIEPDLVVEDADSGYCGAVVGVEAGGVMLEDRRGR CCCCCCCCHHHCCCHHHCCCCCCEEEECCCEEEECCCCCCEEEEEEECCCCEEEECCCCC RRVFPLGEGAFLLDGERVTLARPRPAAPARPSRTASGSIAVPGLPARVARASRIYVEGLH EEEEECCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHEEECCH DAALVERVWGDDLRIEGVVVEPLDGVDDLPSIVASFQPAAGRRLGVLVDHLVAGSKESRI HHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHH AASVAGAHVLVTGHPYIDIWQAVKPSSVGIEAWPRVPRGQQWKEGVCRALGVAEPADMWR HHEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH RVLGAVDSYADLEPGLLGAVERLIDFVTEQP HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRSRDYGHDVLAQPERRAPRKPRTVEIEPDLVVEDADSGYCGAVVGVEAGGVMLEDRRGR CCCCCCCCHHHCCCHHHCCCCCCEEEECCCEEEECCCCCCEEEEEEECCCCEEEECCCCC RRVFPLGEGAFLLDGERVTLARPRPAAPARPSRTASGSIAVPGLPARVARASRIYVEGLH EEEEECCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHEEECCH DAALVERVWGDDLRIEGVVVEPLDGVDDLPSIVASFQPAAGRRLGVLVDHLVAGSKESRI HHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHH AASVAGAHVLVTGHPYIDIWQAVKPSSVGIEAWPRVPRGQQWKEGVCRALGVAEPADMWR HHEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH RVLGAVDSYADLEPGLLGAVERLIDFVTEQP HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA