Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 158316898

GI number: 158316898

Start: 6163312

End: 6165354

Strand: Reverse

Name: secD [H]

Synonym: Franean1_5142

Alternate gene names: 158316898

Gene position: 6165354-6163312 (Counterclockwise)

Preceding gene: 158316899

Following gene: 158316897

Centisome position: 68.64

GC content: 73.32

Gene sequence:

>2043_bases
TTGGCGTTGGCACGTCGCTCGGCACGAGCCTCCGGAGGCGTCTCCGTCGGCGCCCGGCTCGGAGTACTCGGTGCTCTGCT
CGCCGTCCTCTACGGCCTGATGGCCGTCACCGGGATCTGGACGCCCAAGCTCGGCCTGGACCTCCAGGGCGGGACAAGCG
TCATCCTCACCCCGCGTTCGATCACCGGCGGATCGGTCGACAACGGGGCTCTCAACAAGGCCGTGGACATCATCCGTGAG
CGGGTGGACGGCCTCGGCGTGGCCGAGGCCGAGGTCCGCCGCGCGGGTGACACCATCGAGATCTCCGTGCCGGGCCGCGG
CCGCAACGACGTCGTCGACCTGGTGGGCCAGACCGCTGAGTTGCGCTTCCGCGAGGTCTACCAGGCCGACGTCGCGCAGT
CGGCTCCCGCGCCGGCCGCGACACCCGCCCCGGGCACGACGCCGACGCCAGGTGCGACGCCGGCGCCGGGCGCCACACCC
GCTCCGGCCGACATCGCGCCGGCGCCGACAGCCACCGCGCCCGCCTCGCAGCGGCCCGCCGCGCTCGGGCCCGCCCCGGG
CATCGGCGAGCAGCCCGGCCTGGTGGCCCAGCCCGCCAGCTTCACGAGCGGGTCCGGGAGCTCCGGGCCCCGCATCGAGC
TCGCGGCCGCGACCAACCAGTCCGCCTCGCCCGCGCCGGCCACCGCTCCCACGGCCAGTGCGCCCGCCGCCACACAGCCG
GCCGCGACCGACCCGGCCGCGACCAGTCCGGCCGTGACCGATCCGAACGCGGCGGTCGACCCGAACGCGGCGGTAGACCC
GAACGCGCCGACGCCGCCCGCCGACGTCGCGGACAAGTTCGCCAACCTCACCTGCTCGGCCACCGGCGTGCGGAGCACCT
CGGTGAGCCTGGACCGCCCCGAGGACTGGATCGCCGCCTGCGACCGCAACGGGACGACCAAGTACCTGCTCCAGCCCGCG
GCCCTCGTCGGTACCGACGTGTCCACCGCCTCGGCGGGCCTGCTCAGCAGCGGTGGCGGAAGCACGAGCGTCACCACCGG
CCAGTGGGTCGTCAACGTCGACTTCACCGGCTCCGGCCAGACCAAGTTCACGAACCTGACCGAGAAGACGATCGGCAAGC
AGGTCGCGATCGTGCTCGACGGCATCGTCCAGTCGGCGCCGCAGACGAACGAGCGGATCGCCGGCTCGGCGCAGATCTCG
GGGAGCTTCTCCCAGTCCGACGCCGAGGACCTCGCGAACGTCCTGCGCTTCGGCGCGCTGCCGCTGGCCTTCGAGCGCTC
GCAGGCCGAGTCGGTCTCCCCGACCCTGGGCCGCGAGTCACTGCACGGCGGGCTGCTGGCCGGCGCCATCGGGCTCGGCC
TGGTGATCATCTACTCGTTCCTGTACTACCGAGCGCTGGGCATCGTCGTGATCGCCTCGCTGGGGGTCAGTGCGGCGCTC
ATCTACGCCTCGGTCGTCCTGCTCGGCGACGCGATCGGGTTCACCCTGACGCTCGCCGGCATCGCCGGACTGATCGTGTC
GATCGGTGTGACAGCCGACTCGTTCGTCGTCTACTTCGAACGGATCAAGGACGAGGTCCGGGCCGGCCGCAGCGTGCGGA
CCTCCGTCGAACGGGCCTGGCCGGCGGCCCGGCGCACCATGCTGTCCGCGGACACCGTGTCCTTCCTTGCCGCGGCGGTG
CTCTACGTCCTGTCGGTCGGGTCGGTCCGGGGCTTCGCCTTCACCCTCGGTCTGTCGACGCTCATCGACGTCCTGATCAT
GTTCATCTTCACCCGTCCGCTGGTCACCGCGCTGGTCCGGCGGCCGTTGTTCAGTACCAGCCGTTTCTCCGGCCTGATGG
TGCTGTCGACCGGCGGTGCCGCCGCGGCGGACCGGCCGCGACTGACCCGGCGCGCGGACGCGAGCGCTCCCGGCGCCGAG
GACGGCGGCCCACGGGCCGCCGGTGACCTTGACCCGCCGGATCCAGGACCCCGGCTCGAGAAGCCGGGCACGGGGCCGCG
GGTGGCGGGCCGGCGCACGGCCGGGCAGAGGCGGGAGCACTGA

Upstream 100 bases:

>100_bases
CGGTGGTGTCACAGCCGGGCCGTCGGAACGTACCCTCGGTGACACTCGTTCGGAATCGTTGAGCGCCGCCGGGATCGGTG
ACGGTGTGTGAGGAAGGGAC

Downstream 100 bases:

>100_bases
CATGTCGTTGATAGGTCGGCTCTACCGCAGCGAGTTCAGCGTCGACTTCGTCGGCCGTCGCCGTGTCTGGTACATCGTGT
CCGGCGTGCTGATCACGATC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 680; Mature: 679

Protein sequence:

>680_residues
MALARRSARASGGVSVGARLGVLGALLAVLYGLMAVTGIWTPKLGLDLQGGTSVILTPRSITGGSVDNGALNKAVDIIRE
RVDGLGVAEAEVRRAGDTIEISVPGRGRNDVVDLVGQTAELRFREVYQADVAQSAPAPAATPAPGTTPTPGATPAPGATP
APADIAPAPTATAPASQRPAALGPAPGIGEQPGLVAQPASFTSGSGSSGPRIELAAATNQSASPAPATAPTASAPAATQP
AATDPAATSPAVTDPNAAVDPNAAVDPNAPTPPADVADKFANLTCSATGVRSTSVSLDRPEDWIAACDRNGTTKYLLQPA
ALVGTDVSTASAGLLSSGGGSTSVTTGQWVVNVDFTGSGQTKFTNLTEKTIGKQVAIVLDGIVQSAPQTNERIAGSAQIS
GSFSQSDAEDLANVLRFGALPLAFERSQAESVSPTLGRESLHGGLLAGAIGLGLVIIYSFLYYRALGIVVIASLGVSAAL
IYASVVLLGDAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRAGRSVRTSVERAWPAARRTMLSADTVSFLAAAV
LYVLSVGSVRGFAFTLGLSTLIDVLIMFIFTRPLVTALVRRPLFSTSRFSGLMVLSTGGAAAADRPRLTRRADASAPGAE
DGGPRAAGDLDPPDPGPRLEKPGTGPRVAGRRTAGQRREH

Sequences:

>Translated_680_residues
MALARRSARASGGVSVGARLGVLGALLAVLYGLMAVTGIWTPKLGLDLQGGTSVILTPRSITGGSVDNGALNKAVDIIRE
RVDGLGVAEAEVRRAGDTIEISVPGRGRNDVVDLVGQTAELRFREVYQADVAQSAPAPAATPAPGTTPTPGATPAPGATP
APADIAPAPTATAPASQRPAALGPAPGIGEQPGLVAQPASFTSGSGSSGPRIELAAATNQSASPAPATAPTASAPAATQP
AATDPAATSPAVTDPNAAVDPNAAVDPNAPTPPADVADKFANLTCSATGVRSTSVSLDRPEDWIAACDRNGTTKYLLQPA
ALVGTDVSTASAGLLSSGGGSTSVTTGQWVVNVDFTGSGQTKFTNLTEKTIGKQVAIVLDGIVQSAPQTNERIAGSAQIS
GSFSQSDAEDLANVLRFGALPLAFERSQAESVSPTLGRESLHGGLLAGAIGLGLVIIYSFLYYRALGIVVIASLGVSAAL
IYASVVLLGDAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRAGRSVRTSVERAWPAARRTMLSADTVSFLAAAV
LYVLSVGSVRGFAFTLGLSTLIDVLIMFIFTRPLVTALVRRPLFSTSRFSGLMVLSTGGAAAADRPRLTRRADASAPGAE
DGGPRAAGDLDPPDPGPRLEKPGTGPRVAGRRTAGQRREH
>Mature_679_residues
ALARRSARASGGVSVGARLGVLGALLAVLYGLMAVTGIWTPKLGLDLQGGTSVILTPRSITGGSVDNGALNKAVDIIRER
VDGLGVAEAEVRRAGDTIEISVPGRGRNDVVDLVGQTAELRFREVYQADVAQSAPAPAATPAPGTTPTPGATPAPGATPA
PADIAPAPTATAPASQRPAALGPAPGIGEQPGLVAQPASFTSGSGSSGPRIELAAATNQSASPAPATAPTASAPAATQPA
ATDPAATSPAVTDPNAAVDPNAAVDPNAPTPPADVADKFANLTCSATGVRSTSVSLDRPEDWIAACDRNGTTKYLLQPAA
LVGTDVSTASAGLLSSGGGSTSVTTGQWVVNVDFTGSGQTKFTNLTEKTIGKQVAIVLDGIVQSAPQTNERIAGSAQISG
SFSQSDAEDLANVLRFGALPLAFERSQAESVSPTLGRESLHGGLLAGAIGLGLVIIYSFLYYRALGIVVIASLGVSAALI
YASVVLLGDAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRAGRSVRTSVERAWPAARRTMLSADTVSFLAAAVL
YVLSVGSVRGFAFTLGLSTLIDVLIMFIFTRPLVTALVRRPLFSTSRFSGLMVLSTGGAAAADRPRLTRRADASAPGAED
GGPRAAGDLDPPDPGPRLEKPGTGPRVAGRRTAGQRREH

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=267, Percent_Identity=26.5917602996255, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 68793; Mature: 68662

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALARRSARASGGVSVGARLGVLGALLAVLYGLMAVTGIWTPKLGLDLQGGTSVILTPRS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEECCC
ITGGSVDNGALNKAVDIIRERVDGLGVAEAEVRRAGDTIEISVPGRGRNDVVDLVGQTAE
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCHHHHHHHCCHHH
LRFREVYQADVAQSAPAPAATPAPGTTPTPGATPAPGATPAPADIAPAPTATAPASQRPA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ALGPAPGIGEQPGLVAQPASFTSGSGSSGPRIELAAATNQSASPAPATAPTASAPAATQP
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
AATDPAATSPAVTDPNAAVDPNAAVDPNAPTPPADVADKFANLTCSATGVRSTSVSLDRP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCC
EDWIAACDRNGTTKYLLQPAALVGTDVSTASAGLLSSGGGSTSVTTGQWVVNVDFTGSGQ
HHHHHHHCCCCCCCEEECCHHHHCCCCCHHHCCHHCCCCCCCCEECCEEEEEEEECCCCC
TKFTNLTEKTIGKQVAIVLDGIVQSAPQTNERIAGSAQISGSFSQSDAEDLANVLRFGAL
CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHCCC
PLAFERSQAESVSPTLGRESLHGGLLAGAIGLGLVIIYSFLYYRALGIVVIASLGVSAAL
CEEECCCHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYASVVLLGDAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRAGRSVRTSVERAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
PAARRTMLSADTVSFLAAAVLYVLSVGSVRGFAFTLGLSTLIDVLIMFIFTRPLVTALVR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RPLFSTSRFSGLMVLSTGGAAAADRPRLTRRADASAPGAEDGGPRAAGDLDPPDPGPRLE
CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KPGTGPRVAGRRTAGQRREH
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALARRSARASGGVSVGARLGVLGALLAVLYGLMAVTGIWTPKLGLDLQGGTSVILTPRS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEECCC
ITGGSVDNGALNKAVDIIRERVDGLGVAEAEVRRAGDTIEISVPGRGRNDVVDLVGQTAE
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCHHHHHHHCCHHH
LRFREVYQADVAQSAPAPAATPAPGTTPTPGATPAPGATPAPADIAPAPTATAPASQRPA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ALGPAPGIGEQPGLVAQPASFTSGSGSSGPRIELAAATNQSASPAPATAPTASAPAATQP
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
AATDPAATSPAVTDPNAAVDPNAAVDPNAPTPPADVADKFANLTCSATGVRSTSVSLDRP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCC
EDWIAACDRNGTTKYLLQPAALVGTDVSTASAGLLSSGGGSTSVTTGQWVVNVDFTGSGQ
HHHHHHHCCCCCCCEEECCHHHHCCCCCHHHCCHHCCCCCCCCEECCEEEEEEEECCCCC
TKFTNLTEKTIGKQVAIVLDGIVQSAPQTNERIAGSAQISGSFSQSDAEDLANVLRFGAL
CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHCCC
PLAFERSQAESVSPTLGRESLHGGLLAGAIGLGLVIIYSFLYYRALGIVVIASLGVSAAL
CEEECCCHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYASVVLLGDAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRAGRSVRTSVERAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
PAARRTMLSADTVSFLAAAVLYVLSVGSVRGFAFTLGLSTLIDVLIMFIFTRPLVTALVR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RPLFSTSRFSGLMVLSTGGAAAADRPRLTRRADASAPGAEDGGPRAAGDLDPPDPGPRLE
CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KPGTGPRVAGRRTAGQRREH
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]