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The map label for this gene is secF [H]

Identifier: 158316897

GI number: 158316897

Start: 6162057

End: 6163310

Strand: Reverse

Name: secF [H]

Synonym: Franean1_5141

Alternate gene names: 158316897

Gene position: 6163310-6162057 (Counterclockwise)

Preceding gene: 158316898

Following gene: 158316896

Centisome position: 68.62

GC content: 69.46

Gene sequence:

>1254_bases
ATGTCGTTGATAGGTCGGCTCTACCGCAGCGAGTTCAGCGTCGACTTCGTCGGCCGTCGCCGTGTCTGGTACATCGTGTC
CGGCGTGCTGATCACGATCTGTGCCCTCAGCATGATCTTCCGGGGATTCTCCCTCGGTATCGAGTTCTCCGGCGGCGCCG
TCTTCCAGTTCCCGTCGAACGGCGGGACGGTCGAGCAGGTCGACAGCCTTCTGAGCAAGAACGGGATCGACGCGTCCGAC
AGCGTCGTCCAGCAGCTCGAGACGTCCCGCCAGTTCCGGGTGCAGACGCCCACGCTGACCGACCAGCAGACCGAGGCGCT
GCAGAAGGACTTCGCGACGCGCTTCAAGGTCACCAACCCGGACGAGAACATCGCCGTCTCGACCGTCGGGTCGTCCTGGG
GATCGACGATCACGAGCAAGGCGATCCAGGGCCTGATCGTGTTCCTCGTCCTGGTGATGATCTATCTGTCGATCCGGTTC
GAGTGGAAGATGGCGGCTGCGGCGATGGCCGCGCTCATCCATGACCTCATCGTCACGATGGGTGTCTACTCGCTCGTCGG
CTTCGAGGTCACCCCGTCCACGGTCATCGCCGTCCTGACCATCCTCGGCTTCTCGCTGTATGACACGGTGGTCGTCTTCG
ACCGGGTCCGCGAGAACACGGCGGGGATGGCGACGTCCTCGCGGCGCACCTACGCCGAGGCGACCAACGACGCGCTCAAC
GAGACACTGGTCCGCTCGCTGAACACGTCCCTGATCGCGCTCATCCCGGTGGCCTCGCTGCTGTTCGTCGGCGCCGGCCT
GCTGGGCGCCGGCACGCTCAAGGACCTCGCCCTCGCCCAGTTCGTCGGCATCGCCTCGGGCACCTACTCCTCGCTGTTCT
TCGCCACCCCGCTGCTGGTCGACCTCAAGCGCGGTGAGCCGGCGGTGAAGGCACTCGACGCCCGGGTGCTGCGGGCGCGG
GCGAGCGCCGCCCGCGCGGCCAAGACGACCGAGCCCGGGGGTGGCGGCCGGCCGGCGGCGCGCCGCGGCGTGGATCCGGA
GACAGCCGTCCCACTGGCCGACCCGGACTCAGACCGGCGCGACGACGGCCGGGACCCGGCGGACACTGTCGGCATCGCCA
CCGGGATGCGCGCGGCTCCGGCCGGGGCCGCCAGCGGCGCGGCCGGGCGTGGTGGCATGCCATCGGCCCAGCGCCGCGCC
CCGAACCGCAAACCGTCCCAGCGCGGCCGCCCGAGCGGCAAGAAGCGACGCTAG

Upstream 100 bases:

>100_bases
GACCTTGACCCGCCGGATCCAGGACCCCGGCTCGAGAAGCCGGGCACGGGGCCGCGGGTGGCGGGCCGGCGCACGGCCGG
GCAGAGGCGGGAGCACTGAC

Downstream 100 bases:

>100_bases
GGGCGCACCCGCCGCGACGGAGTAACAGAGGCAGAACCACGATCGACAGAACCACGACCGGCACGACATCGGCGCGAACC
GCCGCCCGCGGGGCGGCGAC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSLIGRLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSNGGTVEQVDSLLSKNGIDASD
SVVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNPDENIAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRF
EWKMAAAAMAALIHDLIVTMGVYSLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALN
ETLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKRGEPAVKALDARVLRAR
ASAARAAKTTEPGGGGRPAARRGVDPETAVPLADPDSDRRDDGRDPADTVGIATGMRAAPAGAASGAAGRGGMPSAQRRA
PNRKPSQRGRPSGKKRR

Sequences:

>Translated_417_residues
MSLIGRLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSNGGTVEQVDSLLSKNGIDASD
SVVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNPDENIAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRF
EWKMAAAAMAALIHDLIVTMGVYSLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALN
ETLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKRGEPAVKALDARVLRAR
ASAARAAKTTEPGGGGRPAARRGVDPETAVPLADPDSDRRDDGRDPADTVGIATGMRAAPAGAASGAAGRGGMPSAQRRA
PNRKPSQRGRPSGKKRR
>Mature_416_residues
SLIGRLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSNGGTVEQVDSLLSKNGIDASDS
VVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNPDENIAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRFE
WKMAAAAMAALIHDLIVTMGVYSLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALNE
TLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKRGEPAVKALDARVLRARA
SAARAAKTTEPGGGGRPAARRGVDPETAVPLADPDSDRRDDGRDPADTVGIATGMRAAPAGAASGAAGRGGMPSAQRRAP
NRKPSQRGRPSGKKRR

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=293, Percent_Identity=29.3515358361775, Blast_Score=119, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 44298; Mature: 44167

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIGRLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSN
CCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEECCC
GGTVEQVDSLLSKNGIDASDSVVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNP
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCEECCC
DENIAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRFEWKMAAAAMAALIHDLIVTM
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVYSLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ETLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHE
DLKRGEPAVKALDARVLRARASAARAAKTTEPGGGGRPAARRGVDPETAVPLADPDSDRR
EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
DDGRDPADTVGIATGMRAAPAGAASGAAGRGGMPSAQRRAPNRKPSQRGRPSGKKRR
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLIGRLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSN
CHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEECCC
GGTVEQVDSLLSKNGIDASDSVVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNP
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCEECCC
DENIAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRFEWKMAAAAMAALIHDLIVTM
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVYSLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ETLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHE
DLKRGEPAVKALDARVLRARASAARAAKTTEPGGGGRPAARRGVDPETAVPLADPDSDRR
EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
DDGRDPADTVGIATGMRAAPAGAASGAAGRGGMPSAQRRAPNRKPSQRGRPSGKKRR
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]