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The map label for this gene is scpB [H]

Identifier: 158316820

GI number: 158316820

Start: 6060844

End: 6061560

Strand: Reverse

Name: scpB [H]

Synonym: Franean1_5062

Alternate gene names: 158316820

Gene position: 6061560-6060844 (Counterclockwise)

Preceding gene: 158316821

Following gene: 158316819

Centisome position: 67.49

GC content: 74.9

Gene sequence:

>717_bases
GTGACCCCTGATTCCACCAACGGGCCAGTCGGCGCCGACGGCTTCGCCGGCACCGACGGGCCCACCGGCACGGGCGCGCC
CGCTGGCACGAACGGGGCGGTTCCCGCGCCCCGGTCGCCGGCTCCGCCCCGGTCGCCGGGCCCGCGGGTGCCGCCGGCTC
CGCCCGCGGGCGAGCGGCCATCCGACATCGCGCTCGTCGAGGCGGTGCTGACCGTCGCGGAGAACCCGGTCGGCGTGGCC
GAGTTCGCCACCGCACTCGACATCCCCGCCCGGCGGGTCGAGGCGCTGCTCGCCGAGCTCGCGGCACAGTACGAGCGGGA
CGGGCGCGGCTTCCGGCTGCGCCACGTGGGTCGGGGCTGGCGGCTGTACACGGCCGACGAGTGCGCCCCGTGGGTCGAGC
GCTTCGTGCTGGCCGGCCAGTCCGCCCGCCTCTCCCAGGCCGCGCTGGAGACGCTGGCGATCGTCGCCTACCAGCAGCCG
GTCAGCCGCGGCCGGATCTCCGCGGTGCGCGGGGTCTCGGCCGACGGCGTCATCCGTACCCTCACCGCCCGCAACCTCGT
CGAGGAATGCGGCCACGACCACGAGTCGGGAGCCATCCTGTACCGCACCACCGACTACTTCCTGGAACGCATGGGCCTGC
GTGACCTGGACGAACTGCCCCCGCTCGCACCCCTGCTGCCGGGTGTGGACGATGTCGATGACATCGTGGCGTCATGA

Upstream 100 bases:

>100_bases
CCGGTGCGGGTGCCGGTGCCGGAGCGGGGGAGGGCACCGGAGCTGAGGACGATCCGCTCGACGGCCGCCGCCGGCCGAGG
CGACCGAGGAGACCGACCGC

Downstream 100 bases:

>100_bases
ACGGCACCGAATCCGAGTCCCCCGACACCCGCCGCCGGGACCCGGCGTCCGAGGGCATCCGCCTGCAGAAGGTGCTGGCC
TCCGCCGGCATCGGCTCTCG

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTPDSTNGPVGADGFAGTDGPTGTGAPAGTNGAVPAPRSPAPPRSPGPRVPPAPPAGERPSDIALVEAVLTVAENPVGVA
EFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLYTADECAPWVERFVLAGQSARLSQAALETLAIVAYQQP
VSRGRISAVRGVSADGVIRTLTARNLVEECGHDHESGAILYRTTDYFLERMGLRDLDELPPLAPLLPGVDDVDDIVAS

Sequences:

>Translated_238_residues
MTPDSTNGPVGADGFAGTDGPTGTGAPAGTNGAVPAPRSPAPPRSPGPRVPPAPPAGERPSDIALVEAVLTVAENPVGVA
EFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLYTADECAPWVERFVLAGQSARLSQAALETLAIVAYQQP
VSRGRISAVRGVSADGVIRTLTARNLVEECGHDHESGAILYRTTDYFLERMGLRDLDELPPLAPLLPGVDDVDDIVAS
>Mature_237_residues
TPDSTNGPVGADGFAGTDGPTGTGAPAGTNGAVPAPRSPAPPRSPGPRVPPAPPAGERPSDIALVEAVLTVAENPVGVAE
FATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLYTADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPV
SRGRISAVRGVSADGVIRTLTARNLVEECGHDHESGAILYRTTDYFLERMGLRDLDELPPLAPLLPGVDDVDDIVAS

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 24987; Mature: 24856

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDSTNGPVGADGFAGTDGPTGTGAPAGTNGAVPAPRSPAPPRSPGPRVPPAPPAGERP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SDIALVEAVLTVAENPVGVAEFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGW
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
RLYTADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPVSRGRISAVRGVSADGVIRT
EEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCHHHHHHCCCCCCHHHH
LTARNLVEECGHDHESGAILYRTTDYFLERMGLRDLDELPPLAPLLPGVDDVDDIVAS
HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCHHHCCCHHHHCCCCCCHHHHHCC
>Mature Secondary Structure 
TPDSTNGPVGADGFAGTDGPTGTGAPAGTNGAVPAPRSPAPPRSPGPRVPPAPPAGERP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SDIALVEAVLTVAENPVGVAEFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGW
CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
RLYTADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPVSRGRISAVRGVSADGVIRT
EEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCHHHHHHCCCCCCHHHH
LTARNLVEECGHDHESGAILYRTTDYFLERMGLRDLDELPPLAPLLPGVDDVDDIVAS
HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCHHHCCCHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]