| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yrrC [H]
Identifier: 158316686
GI number: 158316686
Start: 5910751
End: 5912985
Strand: Reverse
Name: yrrC [H]
Synonym: Franean1_4923
Alternate gene names: 158316686
Gene position: 5912985-5910751 (Counterclockwise)
Preceding gene: 158316687
Following gene: 158316685
Centisome position: 65.83
GC content: 72.53
Gene sequence:
>2235_bases GTGTCCCGACCCGCCGCCGCGCCGTTCCAGCTCGCCGTGCTCGAGGCCGTCCTCGAACGGATCACCTACGCCAACGAGGA GACCGGGTACACCGTCGCCCGCGTCGACACGGGCCGCGGCGGCGACCTGCTGACGGTCGTCGGCGCGCTGCTCGGAGCCC AGCCCGGCGAGTCGCTGCGGATGCGCGGGCGGTGGGGCTCGCATCCCCAGTACGGCCGCCAGTTCCAGGTCGAGGACTAC ACCACCGTCCTGCCGGCCACTGTCCAGGGCATCCAGCGGTACCTCGGATCAGGCCTGGTCAAGGGGATCGGGCCCCGGTT CGCCGAGCGCATCGTCGAGCACTTCGGCGTCGACGCGCTGGACGTCATCGAGACCGAGCCGGCGCGGCTCATCGAGGTTC CGGGTCTCGGCCCCAAGCGGACGAAGGCGATCGCCGCGGCCTGGGAGGAACAGAAGGCCATCAAGGAGGTCATGGTCTTC CTACAGGGCGTGGGCGTCTCGACCTCGCTGGCGATCAAGATCTACAAGCAGTACGGGGACGCCTCGATCGGAGTGGTGCG CACCGAGCCCTACCGGCTGGCCGCCGACGTGTGGGGCATCGGGTTCCGCACCGCGGACACCATCGCGCAAGCGGTCGGCA TCCCACACGACAGCCCGCAGCGCATCAAGGCCGGGCTCGCGTTCACCCTCTCCGAGGCCACCGACAGCGGCCACTGCTTC CTGCCCGAGACCCGGCTGATCGCCGACGCCGTGCGCATTCTCGGCGTCGACACCGGCGCGGTGATCGAGGGGCTCGGCGA GCTGATCACCGAGGAGGGGGTGGTGCGCGAGGACGTCCCCGGCGAGGACCCGGAGCAGCCGGTCGCCGCGGTGTACCTCG TCCCGTTCCACCGCGCCGAGATCTCCGTCGCGGGGCAGCTGCTGCGCCTGCTGCGGGCCGACGAGGACCGCCTCGCCGCG TTCGCCGCCGTCGACTGGGAGAAGGCGCTCGGCTGGCTGCACACCCGTACCGGGACCGAGCTGGCGGCGGCGCAGCGCGA GGCGGTCACCCTCGCTCTCACCTCCCGGGTGGCGGTGCTGACCGGCGGGCCCGGCTGCGGGAAGAGCTTCACGGTGCGCT CGGTCGTCGAGCTGGCCCGCGCCCGGCGGGCGAAGGTCGTCCTCACCGCCCCGACCGGACGGGCCGCCAAGCGGCTCGCC GAGCTGACCGGCCACGAGGCGTCGACGGTGCACCGGCTGCTCGAGCTGCGCCCCGGCGGCGACGCGGCCTACGACCGGGA CCGCCCGCTCGACGCCGACCTCGTCGTGGTGGACGAGGCGTCCATGGTCGACCTGCTGCTGATGAACAAGCTGGTCAAGG CCGTCCCGCCGGGCGGGCACCTGCTGCTGGTGGGCGACGTCGACCAGCTTCCCTCCGTCGGCGCCGGGCAGGTGCTGCGT GATCTGCTCGCGTCCGGCACGCCGATCCCGCACGTGCGGCTGACCCAGGTGTTCCGCCAGGCCAGCGAGTCGGGCGTGGT GACCAACGCGCACCGCATCAACCGCGGGGACCATCCGCTGGTGCGCGGCCTGGACGACTTCTTCCTCTTCGTCGCCGAGG AGGCCGAGGACGCCGCCCGGATCACCGCGGAGGTGGTGGCGCGGCGGATCCCGGCCAAGTTCGGCCTCGACCCGCGGCGC GACATCCAGGTGCTCGCGCCGATGCACCGCGGCCCGGCCGGCGCCGGGGCGCTCAACATCGCGCTGCAGGAAGCACTCAC GCCGAGCCTGCCGGACCGCCCCGAGCGCCGCTTCGGCGGCCGGGTGTTCCGGGTCGGCGACAAGGTCACCCAGGTGCGCA ACAACTACGACAAGGGCGCGAACGGGGTGTTCAACGGGACGCTCGGGGTAGTCACCGCGCTCGACAACGACAACCAGACC CTGACCGTCCGCACCGACGAGGACGAGGACGTCGACTACGAGTTCACCGAGCTCGACGAGCTGACCCACGCCTACGCGGT GACTATCCACCGTTCGCAGGGCAGCGAGTACCCGGCCGTGGTCATCCCGCTGACGACCAGCGCATGGATGATGCTGCAGC GCAACCTGCTGTACACGGCGGTGACGCGGGCGAAGAAGCTGGTGGTCCTGGTCGGCTCGCGCCGGGCCATCGGGCAGGCG GTCCGCTCGGCCGGCCACGGGCAGCGCCACACCGCGCTCGCGCACCGCCTGCAGTCCGCCGGGCGCTCCGGATAG
Upstream 100 bases:
>100_bases AGACTGTGGGCGAGGATGAGCGGATTCCCGACATCGCCTTCTCGACATCGCCTTCCCGACATCGCCACGGGCGATCACCG AAGCCCCGGAGTGACCAGCC
Downstream 100 bases:
>100_bases CTTCCGGGGCTCGCGTTCCGTGGTTCGTGGTTCGTGGTTGAAGCACACAATCCGCGTCCGCTGGATGCTCCGGGTATTTC GGCCCGGTCTCGGTGTCTCT
Product: RecD/TraA family helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 744; Mature: 743
Protein sequence:
>744_residues MSRPAAAPFQLAVLEAVLERITYANEETGYTVARVDTGRGGDLLTVVGALLGAQPGESLRMRGRWGSHPQYGRQFQVEDY TTVLPATVQGIQRYLGSGLVKGIGPRFAERIVEHFGVDALDVIETEPARLIEVPGLGPKRTKAIAAAWEEQKAIKEVMVF LQGVGVSTSLAIKIYKQYGDASIGVVRTEPYRLAADVWGIGFRTADTIAQAVGIPHDSPQRIKAGLAFTLSEATDSGHCF LPETRLIADAVRILGVDTGAVIEGLGELITEEGVVREDVPGEDPEQPVAAVYLVPFHRAEISVAGQLLRLLRADEDRLAA FAAVDWEKALGWLHTRTGTELAAAQREAVTLALTSRVAVLTGGPGCGKSFTVRSVVELARARRAKVVLTAPTGRAAKRLA ELTGHEASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMVDLLLMNKLVKAVPPGGHLLLVGDVDQLPSVGAGQVLR DLLASGTPIPHVRLTQVFRQASESGVVTNAHRINRGDHPLVRGLDDFFLFVAEEAEDAARITAEVVARRIPAKFGLDPRR DIQVLAPMHRGPAGAGALNIALQEALTPSLPDRPERRFGGRVFRVGDKVTQVRNNYDKGANGVFNGTLGVVTALDNDNQT LTVRTDEDEDVDYEFTELDELTHAYAVTIHRSQGSEYPAVVIPLTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQA VRSAGHGQRHTALAHRLQSAGRSG
Sequences:
>Translated_744_residues MSRPAAAPFQLAVLEAVLERITYANEETGYTVARVDTGRGGDLLTVVGALLGAQPGESLRMRGRWGSHPQYGRQFQVEDY TTVLPATVQGIQRYLGSGLVKGIGPRFAERIVEHFGVDALDVIETEPARLIEVPGLGPKRTKAIAAAWEEQKAIKEVMVF LQGVGVSTSLAIKIYKQYGDASIGVVRTEPYRLAADVWGIGFRTADTIAQAVGIPHDSPQRIKAGLAFTLSEATDSGHCF LPETRLIADAVRILGVDTGAVIEGLGELITEEGVVREDVPGEDPEQPVAAVYLVPFHRAEISVAGQLLRLLRADEDRLAA FAAVDWEKALGWLHTRTGTELAAAQREAVTLALTSRVAVLTGGPGCGKSFTVRSVVELARARRAKVVLTAPTGRAAKRLA ELTGHEASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMVDLLLMNKLVKAVPPGGHLLLVGDVDQLPSVGAGQVLR DLLASGTPIPHVRLTQVFRQASESGVVTNAHRINRGDHPLVRGLDDFFLFVAEEAEDAARITAEVVARRIPAKFGLDPRR DIQVLAPMHRGPAGAGALNIALQEALTPSLPDRPERRFGGRVFRVGDKVTQVRNNYDKGANGVFNGTLGVVTALDNDNQT LTVRTDEDEDVDYEFTELDELTHAYAVTIHRSQGSEYPAVVIPLTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQA VRSAGHGQRHTALAHRLQSAGRSG >Mature_743_residues SRPAAAPFQLAVLEAVLERITYANEETGYTVARVDTGRGGDLLTVVGALLGAQPGESLRMRGRWGSHPQYGRQFQVEDYT TVLPATVQGIQRYLGSGLVKGIGPRFAERIVEHFGVDALDVIETEPARLIEVPGLGPKRTKAIAAAWEEQKAIKEVMVFL QGVGVSTSLAIKIYKQYGDASIGVVRTEPYRLAADVWGIGFRTADTIAQAVGIPHDSPQRIKAGLAFTLSEATDSGHCFL PETRLIADAVRILGVDTGAVIEGLGELITEEGVVREDVPGEDPEQPVAAVYLVPFHRAEISVAGQLLRLLRADEDRLAAF AAVDWEKALGWLHTRTGTELAAAQREAVTLALTSRVAVLTGGPGCGKSFTVRSVVELARARRAKVVLTAPTGRAAKRLAE LTGHEASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMVDLLLMNKLVKAVPPGGHLLLVGDVDQLPSVGAGQVLRD LLASGTPIPHVRLTQVFRQASESGVVTNAHRINRGDHPLVRGLDDFFLFVAEEAEDAARITAEVVARRIPAKFGLDPRRD IQVLAPMHRGPAGAGALNIALQEALTPSLPDRPERRFGGRVFRVGDKVTQVRNNYDKGANGVFNGTLGVVTALDNDNQTL TVRTDEDEDVDYEFTELDELTHAYAVTIHRSQGSEYPAVVIPLTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQAV RSAGHGQRHTALAHRLQSAGRSG
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=458, Percent_Identity=30.1310043668122, Blast_Score=139, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 80174; Mature: 80043
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPAAAPFQLAVLEAVLERITYANEETGYTVARVDTGRGGDLLTVVGALLGAQPGESLR CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHE MRGRWGSHPQYGRQFQVEDYTTVLPATVQGIQRYLGSGLVKGIGPRFAERIVEHFGVDAL ECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHCCCCE DVIETEPARLIEVPGLGPKRTKAIAAAWEEQKAIKEVMVFLQGVGVSTSLAIKIYKQYGD EHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEHHHCC ASIGVVRTEPYRLAADVWGIGFRTADTIAQAVGIPHDSPQRIKAGLAFTLSEATDSGHCF CEEEEEECCCEEEEHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCEEEEEECCCCCCCEE LPETRLIADAVRILGVDTGAVIEGLGELITEEGVVREDVPGEDPEQPVAAVYLVPFHRAE CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECHHH ISVAGQLLRLLRADEDRLAAFAAVDWEKALGWLHTRTGTELAAAQREAVTLALTSRVAVL HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHEEEEEECEEEEE TGGPGCGKSFTVRSVVELARARRAKVVLTAPTGRAAKRLAELTGHEASTVHRLLELRPGG ECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC DAAYDRDRPLDADLVVVDEASMVDLLLMNKLVKAVPPGGHLLLVGDVDQLPSVGAGQVLR CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCHHHHHH DLLASGTPIPHVRLTQVFRQASESGVVTNAHRINRGDHPLVRGLDDFFLFVAEEAEDAAR HHHHCCCCCCCHHHHHHHHHHHCCCCEECHHHCCCCCCHHHHCCCHHHEEEECCHHHHHH ITAEVVARRIPAKFGLDPRRDIQVLAPMHRGPAGAGALNIALQEALTPSLPDRPERRFGG HHHHHHHHHCCHHCCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCC RVFRVGDKVTQVRNNYDKGANGVFNGTLGVVTALDNDNQTLTVRTDEDEDVDYEFTELDE EEEEECHHHHHHHHCCCCCCCCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHH LTHAYAVTIHRSQGSEYPAVVIPLTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQA HHEEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHH VRSAGHGQRHTALAHRLQSAGRSG HHHCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure SRPAAAPFQLAVLEAVLERITYANEETGYTVARVDTGRGGDLLTVVGALLGAQPGESLR CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHE MRGRWGSHPQYGRQFQVEDYTTVLPATVQGIQRYLGSGLVKGIGPRFAERIVEHFGVDAL ECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHCCCCE DVIETEPARLIEVPGLGPKRTKAIAAAWEEQKAIKEVMVFLQGVGVSTSLAIKIYKQYGD EHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEHHHCC ASIGVVRTEPYRLAADVWGIGFRTADTIAQAVGIPHDSPQRIKAGLAFTLSEATDSGHCF CEEEEEECCCEEEEHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCEEEEEECCCCCCCEE LPETRLIADAVRILGVDTGAVIEGLGELITEEGVVREDVPGEDPEQPVAAVYLVPFHRAE CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECHHH ISVAGQLLRLLRADEDRLAAFAAVDWEKALGWLHTRTGTELAAAQREAVTLALTSRVAVL HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHEEEEEECEEEEE TGGPGCGKSFTVRSVVELARARRAKVVLTAPTGRAAKRLAELTGHEASTVHRLLELRPGG ECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCC DAAYDRDRPLDADLVVVDEASMVDLLLMNKLVKAVPPGGHLLLVGDVDQLPSVGAGQVLR CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCHHHHHH DLLASGTPIPHVRLTQVFRQASESGVVTNAHRINRGDHPLVRGLDDFFLFVAEEAEDAAR HHHHCCCCCCCHHHHHHHHHHHCCCCEECHHHCCCCCCHHHHCCCHHHEEEECCHHHHHH ITAEVVARRIPAKFGLDPRRDIQVLAPMHRGPAGAGALNIALQEALTPSLPDRPERRFGG HHHHHHHHHCCHHCCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCC RVFRVGDKVTQVRNNYDKGANGVFNGTLGVVTALDNDNQTLTVRTDEDEDVDYEFTELDE EEEEECHHHHHHHHCCCCCCCCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHH LTHAYAVTIHRSQGSEYPAVVIPLTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQA HHEEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHH VRSAGHGQRHTALAHRLQSAGRSG HHHCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]