| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316654
Identifier: 158316654
GI number: 158316654
Start: 5869306
End: 5870766
Strand: Reverse
Name: 158316654
Synonym: Franean1_4891
Alternate gene names: NA
Gene position: 5870766-5869306 (Counterclockwise)
Preceding gene: 158316655
Following gene: 158316652
Centisome position: 65.36
GC content: 78.64
Gene sequence:
>1461_bases ATGGGGGCGCACCACCGCCGGGAGTCCCCCGGCGCCGCCATGGACCGGCCGACCTTTGATGAGGCACCGCAGGGATACGA CCCCCGGCAGGTCGACGAGTACCTCGGGGTCCTGTGGCGGTACGCGAGCGAGGTGACCTCCCGGGCGGCCGCGGCCGAGG CGGCGCTGCGCCACGAGCGCGACCGCAGGGAGGCCGAGGCCCGCCTCGCCGAGGGCCTGCCCGCCCAGGCCGGTGGGCGC ATCGGGCTGATGCTCGAGATCGCGCAGCGCGAGGCCGAGGACATCATCGCGGGCGCCCGCCACCTCGCCGAGTCGGCGCT GGAGGAGGCGGTCGCGCAGGCGGGGGCGAACCATCCGATCGTCCGGGAGGCCCGGGAACAGGCCGAGAAGCTGATCCTCG ACGCGGTTGAGGAGAGCCGGCGGCTCGCGCTGACCCGGCACGAGGACCTCGAGGCCGAGATCGTGCGCGGGACGCACTCG CTCGAGGCGCTGCGGCGTCAGCAGGGCGAGATCATCGGCGCCGTCCTGCGGTTGCGCCGGCTGCTCGGCGGGGACGAGAT CGACCGGGCGGTGACCGACCTCGCCCGCGCGGGCGTGTCACCCGATGGCGTCGCCGCCGACAGCGGCCTGGACGGCCGGC GCGGCGGCCGGGCCGACGCCGGCGCTCCGGTGGGCCCGAACCTGGCCGGAGCGCCGTCGGTGGATCCGTCGGCGGCCCCG TTCACGCCGGGCCGGTCGGCGGCGGGTCCGGGCCACCCGGCCGCGCCGGAACAGCCGGGGCCACCAGGGCAGCCCGGCTC GCAGCCGCAGCCGGGCGGGGCGGCGTCGAGCCTGCACTTCCCGGCTTCAGACCACGCCGGTCACACCGGGGGCGCCGACA GTGCGGGTGACCCCTTGCGTGGTCCGGGCGGCACGGGCCACGCCGGCACCGGTCAGGCCGGTGGCGTGGGGCCGGGCGGC AGCGCCTACGCCGCGGCGGGGCACGCCGCGGCGAGCCCCGCCGGCGCTGGTCACACCAGCACTGGGCACGCCGGTACCGG ACACACGGGCACGAGCCACCTCGGCGCCGGGTCCGTGGGCGCCGGGCATGTGGGAGCGAGCCGCGCCGGGGCGTCCGCGC CGGCCGGGGCGACTAGCTCCGAGGGGAGCACCGGTGGAACATGGGCCGCCTCGTCCCGGCTCACCGCCGAGACCGGCCCG GCGGCGCCCTCGGCCGCCGCAACCGTGGGCTCCGCGACCGCGACCGCGGGTGCGGGTGCGCGGCGCGGCCCGGGGCGTCA TCGCCAGCAGCAGCGGGACGTCCCCGAAGCCGAGCCCTACCCGACCGACCTGGCCGGCGGCTTCGTCCCCGGCGTGCCGG CCGCCGGGGGAGCCGGAACCGGCCCGGTACGCATGCCCGCCGCGGGCTACCGCCCCGCCGCCGAGGAGGACATCATCGAC GCGGAGATCGTCGAGGAGTAG
Upstream 100 bases:
>100_bases CGGCGAGGCGGACGACCAGGCGCCGGCCACCGTCCGCGACACCGTCGACTCACTGCTCGGTGTCGACCTTGGGCCTGTCC TACCGAGAGGAACCTAGCCG
Downstream 100 bases:
>100_bases ACCTCGCGCCCGGGCGCGGTCACTCCCCCCGGCGGCGCAGGTAGCGCTCGAACTCCCGGGCGATGGCGTCGCCGCTGGCC TCGGGCAGCGCCGTCTCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MGAHHRRESPGAAMDRPTFDEAPQGYDPRQVDEYLGVLWRYASEVTSRAAAAEAALRHERDRREAEARLAEGLPAQAGGR IGLMLEIAQREAEDIIAGARHLAESALEEAVAQAGANHPIVREAREQAEKLILDAVEESRRLALTRHEDLEAEIVRGTHS LEALRRQQGEIIGAVLRLRRLLGGDEIDRAVTDLARAGVSPDGVAADSGLDGRRGGRADAGAPVGPNLAGAPSVDPSAAP FTPGRSAAGPGHPAAPEQPGPPGQPGSQPQPGGAASSLHFPASDHAGHTGGADSAGDPLRGPGGTGHAGTGQAGGVGPGG SAYAAAGHAAASPAGAGHTSTGHAGTGHTGTSHLGAGSVGAGHVGASRAGASAPAGATSSEGSTGGTWAASSRLTAETGP AAPSAAATVGSATATAGAGARRGPGRHRQQQRDVPEAEPYPTDLAGGFVPGVPAAGGAGTGPVRMPAAGYRPAAEEDIID AEIVEE
Sequences:
>Translated_486_residues MGAHHRRESPGAAMDRPTFDEAPQGYDPRQVDEYLGVLWRYASEVTSRAAAAEAALRHERDRREAEARLAEGLPAQAGGR IGLMLEIAQREAEDIIAGARHLAESALEEAVAQAGANHPIVREAREQAEKLILDAVEESRRLALTRHEDLEAEIVRGTHS LEALRRQQGEIIGAVLRLRRLLGGDEIDRAVTDLARAGVSPDGVAADSGLDGRRGGRADAGAPVGPNLAGAPSVDPSAAP FTPGRSAAGPGHPAAPEQPGPPGQPGSQPQPGGAASSLHFPASDHAGHTGGADSAGDPLRGPGGTGHAGTGQAGGVGPGG SAYAAAGHAAASPAGAGHTSTGHAGTGHTGTSHLGAGSVGAGHVGASRAGASAPAGATSSEGSTGGTWAASSRLTAETGP AAPSAAATVGSATATAGAGARRGPGRHRQQQRDVPEAEPYPTDLAGGFVPGVPAAGGAGTGPVRMPAAGYRPAAEEDIID AEIVEE >Mature_485_residues GAHHRRESPGAAMDRPTFDEAPQGYDPRQVDEYLGVLWRYASEVTSRAAAAEAALRHERDRREAEARLAEGLPAQAGGRI GLMLEIAQREAEDIIAGARHLAESALEEAVAQAGANHPIVREAREQAEKLILDAVEESRRLALTRHEDLEAEIVRGTHSL EALRRQQGEIIGAVLRLRRLLGGDEIDRAVTDLARAGVSPDGVAADSGLDGRRGGRADAGAPVGPNLAGAPSVDPSAAPF TPGRSAAGPGHPAAPEQPGPPGQPGSQPQPGGAASSLHFPASDHAGHTGGADSAGDPLRGPGGTGHAGTGQAGGVGPGGS AYAAAGHAAASPAGAGHTSTGHAGTGHTGTSHLGAGSVGAGHVGASRAGASAPAGATSSEGSTGGTWAASSRLTAETGPA APSAAATVGSATATAGAGARRGPGRHRQQQRDVPEAEPYPTDLAGGFVPGVPAAGGAGTGPVRMPAAGYRPAAEEDIIDA EIVEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48257; Mature: 48126
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAHHRRESPGAAMDRPTFDEAPQGYDPRQVDEYLGVLWRYASEVTSRAAAAEAALRHER CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRREAEARLAEGLPAQAGGRIGLMLEIAQREAEDIIAGARHLAESALEEAVAQAGANHPI HHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH VREAREQAEKLILDAVEESRRLALTRHEDLEAEIVRGTHSLEALRRQQGEIIGAVLRLRR HHHHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGGDEIDRAVTDLARAGVSPDGVAADSGLDGRRGGRADAGAPVGPNLAGAPSVDPSAAP HHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC FTPGRSAAGPGHPAAPEQPGPPGQPGSQPQPGGAASSLHFPASDHAGHTGGADSAGDPLR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GPGGTGHAGTGQAGGVGPGGSAYAAAGHAAASPAGAGHTSTGHAGTGHTGTSHLGAGSVG CCCCCCCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AGHVGASRAGASAPAGATSSEGSTGGTWAASSRLTAETGPAAPSAAATVGSATATAGAGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCCC RRGPGRHRQQQRDVPEAEPYPTDLAGGFVPGVPAAGGAGTGPVRMPAAGYRPAAEEDIID CCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC AEIVEE HHHHCC >Mature Secondary Structure GAHHRRESPGAAMDRPTFDEAPQGYDPRQVDEYLGVLWRYASEVTSRAAAAEAALRHER CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DRREAEARLAEGLPAQAGGRIGLMLEIAQREAEDIIAGARHLAESALEEAVAQAGANHPI HHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH VREAREQAEKLILDAVEESRRLALTRHEDLEAEIVRGTHSLEALRRQQGEIIGAVLRLRR HHHHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGGDEIDRAVTDLARAGVSPDGVAADSGLDGRRGGRADAGAPVGPNLAGAPSVDPSAAP HHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC FTPGRSAAGPGHPAAPEQPGPPGQPGSQPQPGGAASSLHFPASDHAGHTGGADSAGDPLR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GPGGTGHAGTGQAGGVGPGGSAYAAAGHAAASPAGAGHTSTGHAGTGHTGTSHLGAGSVG CCCCCCCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AGHVGASRAGASAPAGATSSEGSTGGTWAASSRLTAETGPAAPSAAATVGSATATAGAGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCCC RRGPGRHRQQQRDVPEAEPYPTDLAGGFVPGVPAAGGAGTGPVRMPAAGYRPAAEEDIID CCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC AEIVEE HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA