Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 158316465

GI number: 158316465

Start: 5616225

End: 5616935

Strand: Reverse

Name: ydhC [H]

Synonym: Franean1_4700

Alternate gene names: 158316465

Gene position: 5616935-5616225 (Counterclockwise)

Preceding gene: 158316466

Following gene: 158316464

Centisome position: 62.54

GC content: 68.92

Gene sequence:

>711_bases
GTGACACAGCCGACGCCGACACAGAGTTCGCCTGCTCGCAGCAACGTGCAGGCACTCGTCGATACCATCCGCGGACGGAT
CATCCGCGGCCAGTTCGCGCCCGGCCAGCGTCTGAAGGAGGAGTGGCTCGCCGCCGAGTTCGGCGTGTCACGGATCCCGA
TGCGGGAGGCGCTGCGGGCGCTGGCGTCCGAGGGATTCGTCCGGTCCGAACGCTACGGCGGCACCTTCGTCGCCACCCTG
GACGCCGAGGCCGCCCATGACCTGCTCGATGTGCGGGCGGTCCTGGAGCCGCTGGCCGCGGCGCAGGCGGCGATGCGGTG
CACCCCCGAGCACCTCGAGACGTTCCGTCGGCTCCTCGACGAGGGTGACCGAGCGTTCCGGGAGCGGCGGCCCGAGGACA
CCCGCACGGTGAAGGGGCAGCTTTACGAGCATCTGGCACTGGCGTCCGGGAACAGCACGCTGATCGCACTGATGCGTGTC
GTGCGCTTCAAGATTGAATGGGCCACCTCAATCGAGCTCATCGAGCAGATTCCGGAGGAGACGCGAAACCTCCGGGCGAA
GCTCGTTCGCGACATGGTCGATGCCATGGCTGACCGCGATCCTGCCCGGGCGGCGACGGCGGCGGCGGCCATCATCGACG
CGACCTACGCCTCCCAAGGCTGGCGGCGTGTCGTCGAGGCACGGTTCGAAGCCGCGAGCAAGTCCCCTTAG

Upstream 100 bases:

>100_bases
GCGCGGACGGGAAGACCCCGAAGAGGTTCACCTACCATCTGCACAACGGGCTGCGGTTCGAACTCCTGGATCAGCGTTCC
GGTAGGGCAGAGTAAGAGCG

Downstream 100 bases:

>100_bases
CTAATCGCGCGGAGGAGGTCACGAGCCTTGTCACAGTTCTTATGCGTAGGCGCACGTGAAGATCGGAGCTCACCCGTTCT
GGTCCCCGGCTGCGGCTGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTQPTPTQSSPARSNVQALVDTIRGRIIRGQFAPGQRLKEEWLAAEFGVSRIPMREALRALASEGFVRSERYGGTFVATL
DAEAAHDLLDVRAVLEPLAAAQAAMRCTPEHLETFRRLLDEGDRAFRERRPEDTRTVKGQLYEHLALASGNSTLIALMRV
VRFKIEWATSIELIEQIPEETRNLRAKLVRDMVDAMADRDPARAATAAAAIIDATYASQGWRRVVEARFEAASKSP

Sequences:

>Translated_236_residues
MTQPTPTQSSPARSNVQALVDTIRGRIIRGQFAPGQRLKEEWLAAEFGVSRIPMREALRALASEGFVRSERYGGTFVATL
DAEAAHDLLDVRAVLEPLAAAQAAMRCTPEHLETFRRLLDEGDRAFRERRPEDTRTVKGQLYEHLALASGNSTLIALMRV
VRFKIEWATSIELIEQIPEETRNLRAKLVRDMVDAMADRDPARAATAAAAIIDATYASQGWRRVVEARFEAASKSP
>Mature_235_residues
TQPTPTQSSPARSNVQALVDTIRGRIIRGQFAPGQRLKEEWLAAEFGVSRIPMREALRALASEGFVRSERYGGTFVATLD
AEAAHDLLDVRAVLEPLAAAQAAMRCTPEHLETFRRLLDEGDRAFRERRPEDTRTVKGQLYEHLALASGNSTLIALMRVV
RFKIEWATSIELIEQIPEETRNLRAKLVRDMVDAMADRDPARAATAAAAIIDATYASQGWRRVVEARFEAASKSP

Specific function: Transcriptional Repressor For The Pyruvate Dehydrogenase Complex Genes ACEef And Lpd. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26271; Mature: 26140

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPTPTQSSPARSNVQALVDTIRGRIIRGQFAPGQRLKEEWLAAEFGVSRIPMREALRA
CCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
LASEGFVRSERYGGTFVATLDAEAAHDLLDVRAVLEPLAAAQAAMRCTPEHLETFRRLLD
HHHCCCHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EGDRAFRERRPEDTRTVKGQLYEHLALASGNSTLIALMRVVRFKIEWATSIELIEQIPEE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRNLRAKLVRDMVDAMADRDPARAATAAAAIIDATYASQGWRRVVEARFEAASKSP
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQPTPTQSSPARSNVQALVDTIRGRIIRGQFAPGQRLKEEWLAAEFGVSRIPMREALRA
CCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
LASEGFVRSERYGGTFVATLDAEAAHDLLDVRAVLEPLAAAQAAMRCTPEHLETFRRLLD
HHHCCCHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EGDRAFRERRPEDTRTVKGQLYEHLALASGNSTLIALMRVVRFKIEWATSIELIEQIPEE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRNLRAKLVRDMVDAMADRDPARAATAAAAIIDATYASQGWRRVVEARFEAASKSP
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]