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The map label for this gene is xylB [H]

Identifier: 158316446

GI number: 158316446

Start: 5590958

End: 5592436

Strand: Reverse

Name: xylB [H]

Synonym: Franean1_4681

Alternate gene names: 158316446

Gene position: 5592436-5590958 (Counterclockwise)

Preceding gene: 158316447

Following gene: 158316444

Centisome position: 62.26

GC content: 70.66

Gene sequence:

>1479_bases
ATGAACGCCAACCCGATCCTGCCCGGTTTTCACCCGGACCCGTCGATCTGCCGGGTGGGCGACGATTACTACCTGGTGAC
CTCGAGCTTCGAGTACTTCCCCGGGGTGCCGATCTTCCGCAGCACGGACCTCACCGGCTGGGAACAGATCGGCAACGTGC
TCGACCGCCCCACCCAGCTGAACGTGACCCCGGGCCTGGAGTCGGCCAGCACAGGGATCTTCGCGCCGACCCTGCGCCAC
CATGACGGCAGATTCTGGCTCGCCACGACGAACTTCACCGACGTCCGTAAGGGTCACCTCATCGTCCAGGCGGCCGACCC
GGCCGGCGCATGGACCGACCCGGTCCACACAGGCGGGGGAACGGTCGGGATTGACCCCGACCTGGCGTGGGACGAGAACG
GTACCTGTCATCTGACGTGGTGCTTTCCCGGGCAGATCATGCAGGCCGCCGTCGACCCGGAGAGCGGGAGGCTGCTCTCC
GAGCCCCGTGGGCTGTGGAGCGGGACGGGGCGTGCCCACCCTGAAGGCCCGCACCTGTTCAGCCGGGAAGGCTGGTGGTA
CCTGGTCATCGCCGAGGGCGGCACCGACGGTGGCCACGCCGTGTCGATCGCGCGTTCCCGCTCGATCACCGGACCCTTCA
CCGGCAACCCCGCCAATCCGATCCTCACCAGGAGCGGCACCGAACACCCGGTCCAGAGCACCGGCCACGCCGACTTCGTC
GAACTTCCCGGGGGTGAGTGGGCGATGGTTCACCTGGGGGTCCGCCCGCGCGGCACGTTCCCCAAGTTCCACGTCAACGG
CCGGGAGACCTTCCTGACCGGCATTACCTGGGCCGACGGCTGGCCGATCGTGGTGGAGGACCGGTTCACGGTGCCAGTCC
GGGACAACTCCTTCGTCGACGAGTTCCGCACGCCGACACTGCATCCCCGGTGGGTCTCCCCGGGGACCGACCCACGGACT
TTCACCCGCCACCGACCCGGCGGAGTCGTCCTGGCCGCCGGCCGGGCACCCGACGCGGGCGAGGCCAGGCGCCTGCTCGC
TGTGCGCGCCCAGGACCCGCAATGGCAGGTAACCGCGGTCATCCCCGACGGCGACGCCTGCCTGACCGTCCGGATGGACG
ACGCCCACTGGGTCGCCGTCGAACGCCGTGGGGAGATGCTGGCGGCCAGGATGGTGCTCGGCCCACTTGACCAGACCCTC
GCCACCGCCGCCGGGATCGGCCCGGGCGACGCGCTCGCCGTCCGCGCCGTGACGCATGCCGAGGCCGCCAGCTTCCGTGC
CGGCCCCGACCAGCTCGAGCTGGGCCACCTCACCGACGGCGAGTTCCGGCTGCTCGCCACGGTCGACGGGCGCTACCTCT
CGACCGAGGTCGCCGGCGGCTTCACCGGGCGCGTCGTCGGAGTCGAGGCGATCGGCACCGACGCCACCCTGTCACGATTC
GAATACCTGGCCTTGGATGCCGCCGCGCCCCAGGGCTAG

Upstream 100 bases:

>100_bases
CACCTCGCTGGTGGACGCGCCCTGATGACGGGTCAGCCGGCCTGCGCGGCGGACACCATCGACAGCCCCACAGACGGGGG
GCAACGGATGAGAAGGACTC

Downstream 100 bases:

>100_bases
GCGAACGTCAGGACGGCGGTGCCGTGCTGCGGCGCAGGACCAGCTCCGGCGGGATGACGACATGGGTCCGGCCGGCCGTG
CCGGTCTCGACCTGCTCCAG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MNANPILPGFHPDPSICRVGDDYYLVTSSFEYFPGVPIFRSTDLTGWEQIGNVLDRPTQLNVTPGLESASTGIFAPTLRH
HDGRFWLATTNFTDVRKGHLIVQAADPAGAWTDPVHTGGGTVGIDPDLAWDENGTCHLTWCFPGQIMQAAVDPESGRLLS
EPRGLWSGTGRAHPEGPHLFSREGWWYLVIAEGGTDGGHAVSIARSRSITGPFTGNPANPILTRSGTEHPVQSTGHADFV
ELPGGEWAMVHLGVRPRGTFPKFHVNGRETFLTGITWADGWPIVVEDRFTVPVRDNSFVDEFRTPTLHPRWVSPGTDPRT
FTRHRPGGVVLAAGRAPDAGEARRLLAVRAQDPQWQVTAVIPDGDACLTVRMDDAHWVAVERRGEMLAARMVLGPLDQTL
ATAAGIGPGDALAVRAVTHAEAASFRAGPDQLELGHLTDGEFRLLATVDGRYLSTEVAGGFTGRVVGVEAIGTDATLSRF
EYLALDAAAPQG

Sequences:

>Translated_492_residues
MNANPILPGFHPDPSICRVGDDYYLVTSSFEYFPGVPIFRSTDLTGWEQIGNVLDRPTQLNVTPGLESASTGIFAPTLRH
HDGRFWLATTNFTDVRKGHLIVQAADPAGAWTDPVHTGGGTVGIDPDLAWDENGTCHLTWCFPGQIMQAAVDPESGRLLS
EPRGLWSGTGRAHPEGPHLFSREGWWYLVIAEGGTDGGHAVSIARSRSITGPFTGNPANPILTRSGTEHPVQSTGHADFV
ELPGGEWAMVHLGVRPRGTFPKFHVNGRETFLTGITWADGWPIVVEDRFTVPVRDNSFVDEFRTPTLHPRWVSPGTDPRT
FTRHRPGGVVLAAGRAPDAGEARRLLAVRAQDPQWQVTAVIPDGDACLTVRMDDAHWVAVERRGEMLAARMVLGPLDQTL
ATAAGIGPGDALAVRAVTHAEAASFRAGPDQLELGHLTDGEFRLLATVDGRYLSTEVAGGFTGRVVGVEAIGTDATLSRF
EYLALDAAAPQG
>Mature_492_residues
MNANPILPGFHPDPSICRVGDDYYLVTSSFEYFPGVPIFRSTDLTGWEQIGNVLDRPTQLNVTPGLESASTGIFAPTLRH
HDGRFWLATTNFTDVRKGHLIVQAADPAGAWTDPVHTGGGTVGIDPDLAWDENGTCHLTWCFPGQIMQAAVDPESGRLLS
EPRGLWSGTGRAHPEGPHLFSREGWWYLVIAEGGTDGGHAVSIARSRSITGPFTGNPANPILTRSGTEHPVQSTGHADFV
ELPGGEWAMVHLGVRPRGTFPKFHVNGRETFLTGITWADGWPIVVEDRFTVPVRDNSFVDEFRTPTLHPRWVSPGTDPRT
FTRHRPGGVVLAAGRAPDAGEARRLLAVRAQDPQWQVTAVIPDGDACLTVRMDDAHWVAVERRGEMLAARMVLGPLDQTL
ATAAGIGPGDALAVRAVTHAEAASFRAGPDQLELGHLTDGEFRLLATVDGRYLSTEVAGGFTGRVVGVEAIGTDATLSRF
EYLALDAAAPQG

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=545, Percent_Identity=31.1926605504587, Blast_Score=204, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 52967; Mature: 52967

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANPILPGFHPDPSICRVGDDYYLVTSSFEYFPGVPIFRSTDLTGWEQIGNVLDRPTQL
CCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHCCCEEE
NVTPGLESASTGIFAPTLRHHDGRFWLATTNFTDVRKGHLIVQAADPAGAWTDPVHTGGG
EECCCCCCCCCCEEECEEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCC
TVGIDPDLAWDENGTCHLTWCFPGQIMQAAVDPESGRLLSEPRGLWSGTGRAHPEGPHLF
EEECCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
SREGWWYLVIAEGGTDGGHAVSIARSRSITGPFTGNPANPILTRSGTEHPVQSTGHADFV
CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEE
ELPGGEWAMVHLGVRPRGTFPKFHVNGRETFLTGITWADGWPIVVEDRFTVPVRDNSFVD
ECCCCCEEEEEEECCCCCCCCEEEECCCEEEEEEEEECCCCEEEEECCEEEEECCCCHHH
EFRTPTLHPRWVSPGTDPRTFTRHRPGGVVLAAGRAPDAGEARRLLAVRAQDPQWQVTAV
HHCCCCCCCEECCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCEEEEEE
IPDGDACLTVRMDDAHWVAVERRGEMLAARMVLGPLDQTLATAAGIGPGDALAVRAVTHA
ECCCCEEEEEEECCCEEEEEECCCCEEEEHHHHCCCHHHHHHHCCCCCCCCEEEEEEHHH
EAASFRAGPDQLELGHLTDGEFRLLATVDGRYLSTEVAGGFTGRVVGVEAIGTDATLSRF
HHHHCCCCCCCEEECCCCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEEECCCHHHHHE
EYLALDAAAPQG
EEEEEECCCCCC
>Mature Secondary Structure
MNANPILPGFHPDPSICRVGDDYYLVTSSFEYFPGVPIFRSTDLTGWEQIGNVLDRPTQL
CCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHCCCEEE
NVTPGLESASTGIFAPTLRHHDGRFWLATTNFTDVRKGHLIVQAADPAGAWTDPVHTGGG
EECCCCCCCCCCEEECEEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCC
TVGIDPDLAWDENGTCHLTWCFPGQIMQAAVDPESGRLLSEPRGLWSGTGRAHPEGPHLF
EEECCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
SREGWWYLVIAEGGTDGGHAVSIARSRSITGPFTGNPANPILTRSGTEHPVQSTGHADFV
CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEE
ELPGGEWAMVHLGVRPRGTFPKFHVNGRETFLTGITWADGWPIVVEDRFTVPVRDNSFVD
ECCCCCEEEEEEECCCCCCCCEEEECCCEEEEEEEEECCCCEEEEECCEEEEECCCCHHH
EFRTPTLHPRWVSPGTDPRTFTRHRPGGVVLAAGRAPDAGEARRLLAVRAQDPQWQVTAV
HHCCCCCCCEECCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEEEEECCCCEEEEEE
IPDGDACLTVRMDDAHWVAVERRGEMLAARMVLGPLDQTLATAAGIGPGDALAVRAVTHA
ECCCCEEEEEEECCCEEEEEECCCCEEEEHHHHCCCHHHHHHHCCCCCCCCEEEEEEHHH
EAASFRAGPDQLELGHLTDGEFRLLATVDGRYLSTEVAGGFTGRVVGVEAIGTDATLSRF
HHHHCCCCCCCEEECCCCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEEECCCHHHHHE
EYLALDAAAPQG
EEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]