| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316254
Identifier: 158316254
GI number: 158316254
Start: 5344346
End: 5345605
Strand: Reverse
Name: 158316254
Synonym: Franean1_4479
Alternate gene names: NA
Gene position: 5345605-5344346 (Counterclockwise)
Preceding gene: 158316255
Following gene: 158316253
Centisome position: 59.51
GC content: 72.14
Gene sequence:
>1260_bases ATGCCGCGGCGAAAGCAGGTCAGGGTGAGATCCGAAGGCTCCGCACCGAGGGGCAGATTCCTGGTGGTCGTGGGGGCGAG CGCGCTGGGCGTCGTCACGGTCGTGATGCCCTCGCTGCTGCTGGGTGCCCTGGCGCCGCAGATCAAGATGGATCTCGGCA TCGACGACGTGGCCATCGGGGTGGTGAGTACCGTCTACGGGGGCGCGGGCGCCGCCGTAGCGCTGTTCGCTGGCGGGCTC GCGGATCGCATCGGGTGGTCCCGGGCCATGATGGCGGCGAATTCCGCCGCCGCCGTCAGCTGCGTCGGGGTCGGGCTGCT GGCCGGGTCGTACGGAATTCTGCTCGGTTGCATGTTCCTCGCCGGCTGCGCGATGGGCCTGGGCATGCCCGCGTGCAGCC TTCTCCTGGCCAGCGAGGTCGGCGCGCATCAGCATGGGTTCGTCTTCGGCATCAAGCAGGCGGCGACGCCCGCGGCGGCT CTGCTGGCTGGTCTCGCGGTGCCGCTCGTGGGCCTGACCCTCGGCTGGCGCTGGGCCTACGGAGCCGTGAGCGTGCTGGC GGTCGCTGCGGCGGTGCTGAGCCGCCGCATCCGGACGCTGCAGGCTCCCGGTCCGGCCGCGGGCGGCACAGCGGCGACGC ACCGGGCCGGCGGCGTCGCGATGCCGAAGGGACGCCCCAGCGTCGCTGTGATCCTCCCGCCGACGTCGGCTGCCGCTGGC GCGTCGATCGCGATGGGGGCGGTGCTGGCGTTCGTTGTGCTGTCCGCCGTCGAGGCCGGCCTCTCGCAGAGTAGTGCCGG GATTCTGCTGGCTGTCGGGAGCACCGCCGGTATCGCCGTCCGTATCGGTGGCGGGTGGTGTCTGGACCGTGGTGACGTGT CGGCGTTCCAGTTGTGCGGATGGATGATTCTTGCTTGCGCGCTCGGTGCGGGAGCGATGGGGACCCGCGACACCGTGCTG GTGGTCGCGGGTGCGATCGTGGCGCTGAGCGTGGGGTGTGGCTGGGCCGGCCTCTTTGACGTCGGCCTTGTGCGGGGCAG TCCGCTCGCTCCCGCGCGGGCGTCAGGCCTGGGCCAGGTCGGCACGGCGGGCGGGGCGGCGGTGGGCCCGCTGCTGTTCG GACTCACGGTCGGTTGGTGGGGCTACCAGGTCGGCTGGTACAGCATCGCGGTGCTGTCGATGACCTCGGCCGGCGTGATG CTGTGGGCTGCCCGGCGCGCCCGGAGATCGGTACTGGCCACAGTCACTGCTGCGCCGTGA
Upstream 100 bases:
>100_bases CTCGCGGTTCCGGGCAGCGTCGGCGACAGTATGTCCCTGCTCTTCGATCATTACGCCAAACCTTGACACCACCGGCTTGA TGAACCGCGAACGGAGATAC
Downstream 100 bases:
>100_bases GGGTCATCGCGCGGGAGCAGTCGGACGGGGAGGTGCGTGCGGATGGACCTGAGCGGCAGGACGGCGGTGGTCGTCGGAGC GGCGAACGTGGTCGGGCGGG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MPRRKQVRVRSEGSAPRGRFLVVVGASALGVVTVVMPSLLLGALAPQIKMDLGIDDVAIGVVSTVYGGAGAAVALFAGGL ADRIGWSRAMMAANSAAAVSCVGVGLLAGSYGILLGCMFLAGCAMGLGMPACSLLLASEVGAHQHGFVFGIKQAATPAAA LLAGLAVPLVGLTLGWRWAYGAVSVLAVAAAVLSRRIRTLQAPGPAAGGTAATHRAGGVAMPKGRPSVAVILPPTSAAAG ASIAMGAVLAFVVLSAVEAGLSQSSAGILLAVGSTAGIAVRIGGGWCLDRGDVSAFQLCGWMILACALGAGAMGTRDTVL VVAGAIVALSVGCGWAGLFDVGLVRGSPLAPARASGLGQVGTAGGAAVGPLLFGLTVGWWGYQVGWYSIAVLSMTSAGVM LWAARRARRSVLATVTAAP
Sequences:
>Translated_419_residues MPRRKQVRVRSEGSAPRGRFLVVVGASALGVVTVVMPSLLLGALAPQIKMDLGIDDVAIGVVSTVYGGAGAAVALFAGGL ADRIGWSRAMMAANSAAAVSCVGVGLLAGSYGILLGCMFLAGCAMGLGMPACSLLLASEVGAHQHGFVFGIKQAATPAAA LLAGLAVPLVGLTLGWRWAYGAVSVLAVAAAVLSRRIRTLQAPGPAAGGTAATHRAGGVAMPKGRPSVAVILPPTSAAAG ASIAMGAVLAFVVLSAVEAGLSQSSAGILLAVGSTAGIAVRIGGGWCLDRGDVSAFQLCGWMILACALGAGAMGTRDTVL VVAGAIVALSVGCGWAGLFDVGLVRGSPLAPARASGLGQVGTAGGAAVGPLLFGLTVGWWGYQVGWYSIAVLSMTSAGVM LWAARRARRSVLATVTAAP >Mature_418_residues PRRKQVRVRSEGSAPRGRFLVVVGASALGVVTVVMPSLLLGALAPQIKMDLGIDDVAIGVVSTVYGGAGAAVALFAGGLA DRIGWSRAMMAANSAAAVSCVGVGLLAGSYGILLGCMFLAGCAMGLGMPACSLLLASEVGAHQHGFVFGIKQAATPAAAL LAGLAVPLVGLTLGWRWAYGAVSVLAVAAAVLSRRIRTLQAPGPAAGGTAATHRAGGVAMPKGRPSVAVILPPTSAAAGA SIAMGAVLAFVVLSAVEAGLSQSSAGILLAVGSTAGIAVRIGGGWCLDRGDVSAFQLCGWMILACALGAGAMGTRDTVLV VAGAIVALSVGCGWAGLFDVGLVRGSPLAPARASGLGQVGTAGGAAVGPLLFGLTVGWWGYQVGWYSIAVLSMTSAGVML WAARRARRSVLATVTAAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41233; Mature: 41102
Theoretical pI: Translated: 10.89; Mature: 10.89
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRKQVRVRSEGSAPRGRFLVVVGASALGVVTVVMPSLLLGALAPQIKMDLGIDDVAIG CCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHEECCCCCHHHHH VVSTVYGGAGAAVALFAGGLADRIGWSRAMMAANSAAAVSCVGVGLLAGSYGILLGCMFL HHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AGCAMGLGMPACSLLLASEVGAHQHGFVFGIKQAATPAAALLAGLAVPLVGLTLGWRWAY HHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHH GAVSVLAVAAAVLSRRIRTLQAPGPAAGGTAATHRAGGVAMPKGRPSVAVILPPTSAAAG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEECCCCCCCEEEEECCCCCCCC ASIAMGAVLAFVVLSAVEAGLSQSSAGILLAVGSTAGIAVRIGGGWCLDRGDVSAFQLCG HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCEEEECCCCCHHHHHHH WMILACALGAGAMGTRDTVLVVAGAIVALSVGCGWAGLFDVGLVRGSPLAPARASGLGQV HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHCCCCCC GTAGGAAVGPLLFGLTVGWWGYQVGWYSIAVLSMTSAGVMLWAARRARRSVLATVTAAP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEECCC >Mature Secondary Structure PRRKQVRVRSEGSAPRGRFLVVVGASALGVVTVVMPSLLLGALAPQIKMDLGIDDVAIG CCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHEECCCCCHHHHH VVSTVYGGAGAAVALFAGGLADRIGWSRAMMAANSAAAVSCVGVGLLAGSYGILLGCMFL HHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AGCAMGLGMPACSLLLASEVGAHQHGFVFGIKQAATPAAALLAGLAVPLVGLTLGWRWAY HHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHH GAVSVLAVAAAVLSRRIRTLQAPGPAAGGTAATHRAGGVAMPKGRPSVAVILPPTSAAAG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEECCCCCCCEEEEECCCCCCCC ASIAMGAVLAFVVLSAVEAGLSQSSAGILLAVGSTAGIAVRIGGGWCLDRGDVSAFQLCG HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCEEEECCCCCHHHHHHH WMILACALGAGAMGTRDTVLVVAGAIVALSVGCGWAGLFDVGLVRGSPLAPARASGLGQV HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHCCCCCC GTAGGAAVGPLLFGLTVGWWGYQVGWYSIAVLSMTSAGVMLWAARRARRSVLATVTAAP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA