| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316229
Identifier: 158316229
GI number: 158316229
Start: 5319629
End: 5320699
Strand: Reverse
Name: 158316229
Synonym: Franean1_4453
Alternate gene names: NA
Gene position: 5320699-5319629 (Counterclockwise)
Preceding gene: 158316230
Following gene: 158316228
Centisome position: 59.24
GC content: 66.48
Gene sequence:
>1071_bases ATGATCGACAAGGGGCACCATTTACGTAACACCCGGCTCGCCGCGCTGATACTCGGTTCCCTCGTCTTCGCGGCGGGTTG TGGTGGCGGCGGGTCCGCCAGCTCGGAGAACTCCGACAGGACCGCGGGAATGACCTGGGACCAAATATTATCCTGCGCCC GCGAAGAGGGCACGGTCACCTATTACTCCTCGAACATTCCCAATCTCAACAAGGCGGTCGGCGAGGCGCTCAACGCCAAG TACGGGATCCGCGTCGAGTCCTACCGCGACGTCGACGCGACGATCCACCAGCGGGTCGACGCCGAGATCAAGACCGGCAA GGTGGTCGCCGACGTCGTCCAGACGGCGTCCCCGCTCACGTTCCAGCGCATGGCCGAGGCCGGAGAGCTGCGCGCGACCG CCGGCCCGGCGTTCGACAGCCCCGACTACCGGCCGGAGTACCGGCACGCGGACAGCCAGTACTTCCAGACCAACAGCCCG TTCTTCGTGCCCGCCTGGAACACCGATCTCCTGCCGGCCGGCCTCAAGGACTACTCGGATCTCCTCAAGCCCGAGCTGCG TGGACGCATCGCGATCCAGGACCCGTCCGTGTCGAACGTGATCCTCGATCACTACCTCTGGATGGAGAGGACCGAGGGCC CGGACTTCCTGCCCGCTCTCGCCGCGCTCGCCCCCCGGGTGTACCCCAGCCAGGTGCAGTCCATCGAAGCGCTCGCCGCC GGCGAGGTGGCAGCCACGACGATCATGTCGCCGTCACTCATCGCCCCCCGGAAGGCAGCTGGTGCCCCGGTGGACTACGT GTTGCCCTCAGGAGGCTCGTACCCGGGGTCGCACTTTTACGCCAGCGTTCTGGCGGGGGCGCCACACCCGTGCGCCGCAC AGGTGCTTGCGAACTTCCTGGTGACATCCGAGGGGCAGGACGTCGTGGCGGAGAACTCCGCATCCGCGCTGCCGAACGTT CCGGGCTCGCCGATCACCATCGACAAGGTGGAGGCCACCGACCCGAACAAGTTCACTGACGAGTTCGTGGACGACCACCT GGCGACCTGGACGAAGCTGTTCCGACGATGA
Upstream 100 bases:
>100_bases TTCGAGGTCGAGCACCCGCCCCGAGAACTTTATCCCCGTTTCCTGGTGCGTACGACATCCGACTGGAGCGGATTCGTCGA AATTCGGAGGAGAAACAGTG
Downstream 100 bases:
>100_bases GCACGGGACATCGGATTCGGCCAGAAGGACGCCTCTCATGACCGTGAAAGTCGATGGCATCGTCAAGCGGTTCGATGGCC GTCCCCCGACGGTGGCGATC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MIDKGHHLRNTRLAALILGSLVFAAGCGGGGSASSENSDRTAGMTWDQILSCAREEGTVTYYSSNIPNLNKAVGEALNAK YGIRVESYRDVDATIHQRVDAEIKTGKVVADVVQTASPLTFQRMAEAGELRATAGPAFDSPDYRPEYRHADSQYFQTNSP FFVPAWNTDLLPAGLKDYSDLLKPELRGRIAIQDPSVSNVILDHYLWMERTEGPDFLPALAALAPRVYPSQVQSIEALAA GEVAATTIMSPSLIAPRKAAGAPVDYVLPSGGSYPGSHFYASVLAGAPHPCAAQVLANFLVTSEGQDVVAENSASALPNV PGSPITIDKVEATDPNKFTDEFVDDHLATWTKLFRR
Sequences:
>Translated_356_residues MIDKGHHLRNTRLAALILGSLVFAAGCGGGGSASSENSDRTAGMTWDQILSCAREEGTVTYYSSNIPNLNKAVGEALNAK YGIRVESYRDVDATIHQRVDAEIKTGKVVADVVQTASPLTFQRMAEAGELRATAGPAFDSPDYRPEYRHADSQYFQTNSP FFVPAWNTDLLPAGLKDYSDLLKPELRGRIAIQDPSVSNVILDHYLWMERTEGPDFLPALAALAPRVYPSQVQSIEALAA GEVAATTIMSPSLIAPRKAAGAPVDYVLPSGGSYPGSHFYASVLAGAPHPCAAQVLANFLVTSEGQDVVAENSASALPNV PGSPITIDKVEATDPNKFTDEFVDDHLATWTKLFRR >Mature_356_residues MIDKGHHLRNTRLAALILGSLVFAAGCGGGGSASSENSDRTAGMTWDQILSCAREEGTVTYYSSNIPNLNKAVGEALNAK YGIRVESYRDVDATIHQRVDAEIKTGKVVADVVQTASPLTFQRMAEAGELRATAGPAFDSPDYRPEYRHADSQYFQTNSP FFVPAWNTDLLPAGLKDYSDLLKPELRGRIAIQDPSVSNVILDHYLWMERTEGPDFLPALAALAPRVYPSQVQSIEALAA GEVAATTIMSPSLIAPRKAAGAPVDYVLPSGGSYPGSHFYASVLAGAPHPCAAQVLANFLVTSEGQDVVAENSASALPNV PGSPITIDKVEATDPNKFTDEFVDDHLATWTKLFRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38224; Mature: 38224
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDKGHHLRNTRLAALILGSLVFAAGCGGGGSASSENSDRTAGMTWDQILSCAREEGTVT CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE YYSSNIPNLNKAVGEALNAKYGIRVESYRDVDATIHQRVDAEIKTGKVVADVVQTASPLT EEECCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHH FQRMAEAGELRATAGPAFDSPDYRPEYRHADSQYFQTNSPFFVPAWNTDLLPAGLKDYSD HHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHEECCCCEEEECCCCCCCCCCHHHHHH LLKPELRGRIAIQDPSVSNVILDHYLWMERTEGPDFLPALAALAPRVYPSQVQSIEALAA HHCHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH GEVAATTIMSPSLIAPRKAAGAPVDYVLPSGGSYPGSHFYASVLAGAPHPCAAQVLANFL CHHHHHHHCCCCCCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH VTSEGQDVVAENSASALPNVPGSPITIDKVEATDPNKFTDEFVDDHLATWTKLFRR HCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIDKGHHLRNTRLAALILGSLVFAAGCGGGGSASSENSDRTAGMTWDQILSCAREEGTVT CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE YYSSNIPNLNKAVGEALNAKYGIRVESYRDVDATIHQRVDAEIKTGKVVADVVQTASPLT EEECCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHH FQRMAEAGELRATAGPAFDSPDYRPEYRHADSQYFQTNSPFFVPAWNTDLLPAGLKDYSD HHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHEECCCCEEEECCCCCCCCCCHHHHHH LLKPELRGRIAIQDPSVSNVILDHYLWMERTEGPDFLPALAALAPRVYPSQVQSIEALAA HHCHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH GEVAATTIMSPSLIAPRKAAGAPVDYVLPSGGSYPGSHFYASVLAGAPHPCAAQVLANFL CHHHHHHHCCCCCCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH VTSEGQDVVAENSASALPNVPGSPITIDKVEATDPNKFTDEFVDDHLATWTKLFRR HCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA