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The map label for this gene is cph2 [H]

Identifier: 158316222

GI number: 158316222

Start: 5310430

End: 5310843

Strand: Reverse

Name: cph2 [H]

Synonym: Franean1_4445

Alternate gene names: 158316222

Gene position: 5310843-5310430 (Counterclockwise)

Preceding gene: 158316223

Following gene: 158316215

Centisome position: 59.13

GC content: 74.64

Gene sequence:

>414_bases
ATGCACCGCCTTCGCCGAACGCAACAGCGCCCCGCCGGCGACCGCTGCCTCGAGCGGGTCGCCGCCTGCCTGGCCAGGAA
CACCGGTGCCGGGCACCTGGCCGCCCGCTACGGCGGTGAGGAGTTCGCCATCGTCATGCCCGGCGCCGAGGCCGAGGAAG
CTGGTCGCCGGGCCGAGGAGCTCCGGCGCGCCGTGGCGAACCTCGCCGAGCCGCACCCGGCGATCCGCGGGGTCACCATC
ACCATCACCATCAGCGTCGGCTTCGCGGCGCTGACCCCCACCGCCGACGACCACCAGCGGCGGCTGGTCGGCCTCGCCGA
CGAAGCCCTGTACCGGGCCAGCGGCACGGACGCAACCAGGTGGAGGCGGCGAGGCCCAAGGACGACCATGCCCGCGCCAC
CGGCTACGAACTGA

Upstream 100 bases:

>100_bases
CTACGAACTCGCCGCCGCCGCCGACCCACGGCCGAGGCTCGCCGCCGCGTCCACCGAACTCGCCGCCGCCGTCTGACCGA
CAGCCGCCCCGGCCGCTGGC

Downstream 100 bases:

>100_bases
TGCCCTGACCAGCGGATCGCTGTCCACCTCGGACAGCGGTCGAACCCCTCAGCCATGTTGGACGAAGCACCGACCCGGGC
CTGCCCGCTTCGCGGTGTAC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MHRLRRTQQRPAGDRCLERVAACLARNTGAGHLAARYGGEEFAIVMPGAEAEEAGRRAEELRRAVANLAEPHPAIRGVTI
TITISVGFAALTPTADDHQRRLVGLADEALYRASGTDATRWRRRGPRTTMPAPPATN

Sequences:

>Translated_137_residues
MHRLRRTQQRPAGDRCLERVAACLARNTGAGHLAARYGGEEFAIVMPGAEAEEAGRRAEELRRAVANLAEPHPAIRGVTI
TITISVGFAALTPTADDHQRRLVGLADEALYRASGTDATRWRRRGPRTTMPAPPATN
>Mature_137_residues
MHRLRRTQQRPAGDRCLERVAACLARNTGAGHLAARYGGEEFAIVMPGAEAEEAGRRAEELRRAVANLAEPHPAIRGVTI
TITISVGFAALTPTADDHQRRLVGLADEALYRASGTDATRWRRRGPRTTMPAPPATN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=103, Percent_Identity=37.8640776699029, Blast_Score=59, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 14862; Mature: 14862

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRLRRTQQRPAGDRCLERVAACLARNTGAGHLAARYGGEEFAIVMPGAEAEEAGRRAEE
CCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHEECCCCEEEEEECCCCHHHHHHHHHH
LRRAVANLAEPHPAIRGVTITITISVGFAALTPTADDHQRRLVGLADEALYRASGTDATR
HHHHHHHHCCCCCCCCCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
WRRRGPRTTMPAPPATN
HHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHRLRRTQQRPAGDRCLERVAACLARNTGAGHLAARYGGEEFAIVMPGAEAEEAGRRAEE
CCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHEECCCCEEEEEECCCCHHHHHHHHHH
LRRAVANLAEPHPAIRGVTITITISVGFAALTPTADDHQRRLVGLADEALYRASGTDATR
HHHHHHHHCCCCCCCCCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
WRRRGPRTTMPAPPATN
HHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]