| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316215
Identifier: 158316215
GI number: 158316215
Start: 5304347
End: 5304886
Strand: Reverse
Name: 158316215
Synonym: Franean1_4438
Alternate gene names: NA
Gene position: 5304886-5304347 (Counterclockwise)
Preceding gene: 158316222
Following gene: 158316214
Centisome position: 59.06
GC content: 69.63
Gene sequence:
>540_bases ATGAGGTATGCGACGGGTGGCGGGTTGACGCCCGCCGGGCAGGTGGAACGGGAGCGGGTTCGGTTGGCCGCGGCGGACAG GTTCGCTGCGGGAGCGACACGGACGGAGGTGGCGCGGGAATTCAAGGTGACCCCGAAAACAGCGGGCTGCTGGTATCGGG CATGGGAATCGGGGGGTGCGGCGGCGTTGCGGTCGACCGGTCCGGTGTCCTCGTGCCGGTTGGATGATCGGGATCTGGCC CGGTTGGAGGCGATCTTGCGTCGGGGGCCGGGGGTGTATGGCTGGACCGATCAGCGGTGGACCCTGGCCCGGGTCGCGCA GGTGATCAGGCGGGAGTTCGGGATCACCTACACCGTGCCGGGGGTGTGGATGCTGCTGGACCGCAACGGCTGGTCGTGCC AGCTGCCGGTGCGGCGCGCGGTCGAACGTGATGACACTGTGGTCGAGGAGTGGAAGGACCGGGGATGGCCGGCGGTAAAA CCACCGCGGCGGCCCGGGGTGCCTGGGTCTGTTTCCTCGACGAGACAGGGCAGGGCCTGA
Upstream 100 bases:
>100_bases CTCGGTGCGGGCCGGCGGTGCACCGGGGCAGTACTGATGGTTAATGCACGGGGTTAATGCTGCTGGTGATGGCTTGTGGT GTGTGGGTACATCTATCGGC
Downstream 100 bases:
>100_bases GGCCGCCACGTGGACGGACGTGGGCGCGCCGCGGGGTGACCCCGGTGGTGCGGGTGCCGGGGCGGGGTGGGGCCGGGCGG GTGAGTGTGGTCGGGATGGT
Product: IS630 family transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MRYATGGGLTPAGQVERERVRLAAADRFAAGATRTEVAREFKVTPKTAGCWYRAWESGGAAALRSTGPVSSCRLDDRDLA RLEAILRRGPGVYGWTDQRWTLARVAQVIRREFGITYTVPGVWMLLDRNGWSCQLPVRRAVERDDTVVEEWKDRGWPAVK PPRRPGVPGSVSSTRQGRA
Sequences:
>Translated_179_residues MRYATGGGLTPAGQVERERVRLAAADRFAAGATRTEVAREFKVTPKTAGCWYRAWESGGAAALRSTGPVSSCRLDDRDLA RLEAILRRGPGVYGWTDQRWTLARVAQVIRREFGITYTVPGVWMLLDRNGWSCQLPVRRAVERDDTVVEEWKDRGWPAVK PPRRPGVPGSVSSTRQGRA >Mature_179_residues MRYATGGGLTPAGQVERERVRLAAADRFAAGATRTEVAREFKVTPKTAGCWYRAWESGGAAALRSTGPVSSCRLDDRDLA RLEAILRRGPGVYGWTDQRWTLARVAQVIRREFGITYTVPGVWMLLDRNGWSCQLPVRRAVERDDTVVEEWKDRGWPAVK PPRRPGVPGSVSSTRQGRA
Specific function: Unknown
COG id: COG3415
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19911; Mature: 19911
Theoretical pI: Translated: 11.23; Mature: 11.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYATGGGLTPAGQVERERVRLAAADRFAAGATRTEVAREFKVTPKTAGCWYRAWESGGA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCC AALRSTGPVSSCRLDDRDLARLEAILRRGPGVYGWTDQRWTLARVAQVIRREFGITYTVP EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECC GVWMLLDRNGWSCQLPVRRAVERDDTVVEEWKDRGWPAVKPPRRPGVPGSVSSTRQGRA CEEEEEECCCCEEECCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRYATGGGLTPAGQVERERVRLAAADRFAAGATRTEVAREFKVTPKTAGCWYRAWESGGA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCC AALRSTGPVSSCRLDDRDLARLEAILRRGPGVYGWTDQRWTLARVAQVIRREFGITYTVP EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECC GVWMLLDRNGWSCQLPVRRAVERDDTVVEEWKDRGWPAVKPPRRPGVPGSVSSTRQGRA CEEEEEECCCCEEECCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA