| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316208
Identifier: 158316208
GI number: 158316208
Start: 5292752
End: 5295556
Strand: Reverse
Name: 158316208
Synonym: Franean1_4431
Alternate gene names: NA
Gene position: 5295556-5292752 (Counterclockwise)
Preceding gene: 158316210
Following gene: 158316205
Centisome position: 58.96
GC content: 63.1
Gene sequence:
>2805_bases ATGGGTGAGAGAGAATTATCCGGCGCACACCGTGGCGGTGGCGTCTCGCGCAGGACCTTCGTGCGCGGTACAGCCGCGGC GGCCGGCTTGGCGGCGTTCGGCGGTGCGCTTGCTGCCTGCACCGGAAGCGAACCCGCGGCTGCGGTGAAGCCGGCGGTTC ACCCTGTGCCCAAGGCGGCATATGTCCGCAAGCTAGGCGCGGTGCCAGCGGGGTCCTGCAACGCGCTCGGGGATCAGCAG TGCAGGACGGGAGTCCCGAACCCCGTGTTCCGCAGTGTGGGGGCGGGCCTGTCCGTACCCGGCCTGGGCCTCCCGCTCGG GGGCGTCGGCGGCGGCTCTTTCATGCTCAACCAGTGTGGGACGTTCGGACCGTGGAACATGGGCGGGCAGCCGACCACGG AATTCTGGGAGATGCGCACCCTCGCGCAGGCGGCGTTCCACGCACGTGAGGAGGTCGTCGGGGGCGGCGGGGGTGTGTCG GTCAGGACACTGGCCGTACCGCACACCAACACCGCTCCTGATCGCACTTTTGGCGACGTCCTGCCTGCCTGGAACACGCT GAAGCCCGGGGACGGCAGCTACGCTGTACTCTTCCCGTTCGGGTACATGACCTACAGCGGCTTCCAGTCAAAGGTCTCCA CCAAGATCTGGTCGCCGATCGTGGCCAACGAGGACGAGCGCACGTCGATGCCGGTGGCGTTCTTCGACATGCTCATGAAC AATCCCACCGCCAAGCCGATCAAGATTTCTGTCATGCTGACGTTCCCGAACGCCCCGGCGTTCGCCACGGGTTCGGTGCG GACTGGTCTTTACAGCAGGTTCGATCGCGATTCCGCGTCGGGTATAGGCGGGGTGACCCTCGGCTCGGACTCCCCGGAGA ACACGCCGGACACTGTGACGTCCGAGTGGACCATTGCCGCGCATCCATTCGCCGGGCAGACACTCACCTACTGCACCTCG TGGGACGGATCGGGCGACGGGAGCGACATCTACGCCCCGTTCTCCGCGGCTGGCGCGGACGGGAAGCTGCCGAACGGCGA CATCGACCAGTCGGCATCGGCCGGTGCGGTGGCCGTGGCGCTCACCCTGGAGCCCGACCAGACACAGACTGTTCGCTTCG CCCTTTCCTGGGACTTCCCGCAGGTCTATTACGACGGCGAGGACGCGACGACGAGGGCCGTCTGGATGCGTCGGTACACG GCGTTCCTCGGCGGAAAGACATCGCGGACCAACGACTACGTCCAGGATTCGTACCCCTTCAGGCAGGGTTTCACCATCGC CCGGAAGGAGCTGGCCCGGTACGATGACTCTCTCGCCGCCGTCGAGTCGTGGTGGAAGCCGATCGCCGAGAATCCACAGG TTCCGCCGTGGCTACGCAAGGCTTCTCTGAACGAGCTGTATCACATGATCTTCAACGGTTCGTTCTGGGAGTCCGGGCTC GTCAGCAACACGATGCCGATGAGTGTCGAAGAGGGAACCTCGCCTCGTCTGGGATCCGCGATCCCGGAAACCCACATCTA TTTCCACGCCGATGGCGGGGACGGTGGAGCGCAGACGAACGAAGTCGACATGGACAGCTCCGGCTACCTCGTTTTCGCGA AGCTGTTCCGCAGCTTGGAGCTGGGTCGTGTTCGCCCGCTGCTTCAGATGGTCAGGCAGAATCCGCTGGGAATCGGGCGC GTGATTCAGCAGACCTTCAGAAGTTCGGGACCCTACATCACCCAGACGGCGTCATTCCAGAATCTCCCGTTCTCCAAGCC GCCCACAGCGGGAAACCCTCCCGCTCCGCCCACCAGAGATCTCGGTGATCTGTTCGCGGACGAAGCCGGAGATCCCTTTC GTGACTGCCCGCACAAGCTCATCTACCGAACGTACGCGCTGATCAAGTTCTACGACGACGACGATCTGCTGGAATACGGA TACGCGCCGATGCTGAAGGCGCTGACATACTCGCAGTTCTTCCGTCCGACCGGCTCCCACCTGCCGGCAGACCCGGCATC CAACAACCCGCCGAACACTATGGATCAGGCTGTCGTGAACGGTCACGGAATCTACAACTGCGGGCTGTATCTGCTGTCGC TTCAAATCCTCTCGACGCTGACGCCCCAGGCTGCCCGACTCGGTGTTGACGAGGCCACACCTGAGATACAGAAGGAACTC GACGAGGAACTGGCGGCAGCGAAGGAGGAATTCGAGAGGATCTTCTGGAACCCGGCCACCGGTCGATACCGCTACTGCGA CGGCACCGGCGGGATCGGAGATCGTACCGGTACTATCAGGGGTCGTTTCAAGCCGGTGCCGCCGCCGGACGCCATCTGGC TCGAGTCCTTCGCCGGTCAGCTCGTCGCGATGGAGCTCGGCCTGCCTGACGTCGTCGATCTGGACCATGCCCGTACTCAC CTGAAGAACACTCTGGATTCATTCGTCCGGTTCAGGGATCCCGAAGGGAACCTGATGGGTGGCCCGATTATCCTCAAGCC GGACTTCAGTATCTACCCTAGTTCGCTGAGGACCACAGAAATCAATGAAGTGATTCCGGGTATCGCCTTCCTGGCCGCCG CGGGAGCATTCCGAATCGGCGCCAAGGTCAAGGACAAGGACATCACGGAAAAGGCGTTGAAGCTCGGAGAGGGGTGTGCG CTCCAGATCTACGACATCGAGAGCAACGGTTACGCCTTCGCAACCCCCGAGAGCTGGTTCGTGGACGACCACCATATCTC CAGGTTTCCTGGATACACGCGAACCCGCTCTGTCTGGTCGCTCTACGACGCGGTCAGCGAAATCTCGGTGAAGAAACCGT CCTGA
Upstream 100 bases:
>100_bases TCGGCGGCCACGTCGTGCACCAGGCCGGCGAGGTCATCATCACACCGCCTTGCCGGGCCCCGCACCAACAGACGAACTTC ACCTTCGGAAGGGCGGCGTG
Downstream 100 bases:
>100_bases CTCCAGTTGATCCTACCTGCTAGGCCGGAGCCTACGCCGGCCTGGTAGGGCGATCCGGACACAGACAGATCAGAGACTGA CGGTGCGACCACTCAACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 934; Mature: 933
Protein sequence:
>934_residues MGERELSGAHRGGGVSRRTFVRGTAAAAGLAAFGGALAACTGSEPAAAVKPAVHPVPKAAYVRKLGAVPAGSCNALGDQQ CRTGVPNPVFRSVGAGLSVPGLGLPLGGVGGGSFMLNQCGTFGPWNMGGQPTTEFWEMRTLAQAAFHAREEVVGGGGGVS VRTLAVPHTNTAPDRTFGDVLPAWNTLKPGDGSYAVLFPFGYMTYSGFQSKVSTKIWSPIVANEDERTSMPVAFFDMLMN NPTAKPIKISVMLTFPNAPAFATGSVRTGLYSRFDRDSASGIGGVTLGSDSPENTPDTVTSEWTIAAHPFAGQTLTYCTS WDGSGDGSDIYAPFSAAGADGKLPNGDIDQSASAGAVAVALTLEPDQTQTVRFALSWDFPQVYYDGEDATTRAVWMRRYT AFLGGKTSRTNDYVQDSYPFRQGFTIARKELARYDDSLAAVESWWKPIAENPQVPPWLRKASLNELYHMIFNGSFWESGL VSNTMPMSVEEGTSPRLGSAIPETHIYFHADGGDGGAQTNEVDMDSSGYLVFAKLFRSLELGRVRPLLQMVRQNPLGIGR VIQQTFRSSGPYITQTASFQNLPFSKPPTAGNPPAPPTRDLGDLFADEAGDPFRDCPHKLIYRTYALIKFYDDDDLLEYG YAPMLKALTYSQFFRPTGSHLPADPASNNPPNTMDQAVVNGHGIYNCGLYLLSLQILSTLTPQAARLGVDEATPEIQKEL DEELAAAKEEFERIFWNPATGRYRYCDGTGGIGDRTGTIRGRFKPVPPPDAIWLESFAGQLVAMELGLPDVVDLDHARTH LKNTLDSFVRFRDPEGNLMGGPIILKPDFSIYPSSLRTTEINEVIPGIAFLAAAGAFRIGAKVKDKDITEKALKLGEGCA LQIYDIESNGYAFATPESWFVDDHHISRFPGYTRTRSVWSLYDAVSEISVKKPS
Sequences:
>Translated_934_residues MGERELSGAHRGGGVSRRTFVRGTAAAAGLAAFGGALAACTGSEPAAAVKPAVHPVPKAAYVRKLGAVPAGSCNALGDQQ CRTGVPNPVFRSVGAGLSVPGLGLPLGGVGGGSFMLNQCGTFGPWNMGGQPTTEFWEMRTLAQAAFHAREEVVGGGGGVS VRTLAVPHTNTAPDRTFGDVLPAWNTLKPGDGSYAVLFPFGYMTYSGFQSKVSTKIWSPIVANEDERTSMPVAFFDMLMN NPTAKPIKISVMLTFPNAPAFATGSVRTGLYSRFDRDSASGIGGVTLGSDSPENTPDTVTSEWTIAAHPFAGQTLTYCTS WDGSGDGSDIYAPFSAAGADGKLPNGDIDQSASAGAVAVALTLEPDQTQTVRFALSWDFPQVYYDGEDATTRAVWMRRYT AFLGGKTSRTNDYVQDSYPFRQGFTIARKELARYDDSLAAVESWWKPIAENPQVPPWLRKASLNELYHMIFNGSFWESGL VSNTMPMSVEEGTSPRLGSAIPETHIYFHADGGDGGAQTNEVDMDSSGYLVFAKLFRSLELGRVRPLLQMVRQNPLGIGR VIQQTFRSSGPYITQTASFQNLPFSKPPTAGNPPAPPTRDLGDLFADEAGDPFRDCPHKLIYRTYALIKFYDDDDLLEYG YAPMLKALTYSQFFRPTGSHLPADPASNNPPNTMDQAVVNGHGIYNCGLYLLSLQILSTLTPQAARLGVDEATPEIQKEL DEELAAAKEEFERIFWNPATGRYRYCDGTGGIGDRTGTIRGRFKPVPPPDAIWLESFAGQLVAMELGLPDVVDLDHARTH LKNTLDSFVRFRDPEGNLMGGPIILKPDFSIYPSSLRTTEINEVIPGIAFLAAAGAFRIGAKVKDKDITEKALKLGEGCA LQIYDIESNGYAFATPESWFVDDHHISRFPGYTRTRSVWSLYDAVSEISVKKPS >Mature_933_residues GERELSGAHRGGGVSRRTFVRGTAAAAGLAAFGGALAACTGSEPAAAVKPAVHPVPKAAYVRKLGAVPAGSCNALGDQQC RTGVPNPVFRSVGAGLSVPGLGLPLGGVGGGSFMLNQCGTFGPWNMGGQPTTEFWEMRTLAQAAFHAREEVVGGGGGVSV RTLAVPHTNTAPDRTFGDVLPAWNTLKPGDGSYAVLFPFGYMTYSGFQSKVSTKIWSPIVANEDERTSMPVAFFDMLMNN PTAKPIKISVMLTFPNAPAFATGSVRTGLYSRFDRDSASGIGGVTLGSDSPENTPDTVTSEWTIAAHPFAGQTLTYCTSW DGSGDGSDIYAPFSAAGADGKLPNGDIDQSASAGAVAVALTLEPDQTQTVRFALSWDFPQVYYDGEDATTRAVWMRRYTA FLGGKTSRTNDYVQDSYPFRQGFTIARKELARYDDSLAAVESWWKPIAENPQVPPWLRKASLNELYHMIFNGSFWESGLV SNTMPMSVEEGTSPRLGSAIPETHIYFHADGGDGGAQTNEVDMDSSGYLVFAKLFRSLELGRVRPLLQMVRQNPLGIGRV IQQTFRSSGPYITQTASFQNLPFSKPPTAGNPPAPPTRDLGDLFADEAGDPFRDCPHKLIYRTYALIKFYDDDDLLEYGY APMLKALTYSQFFRPTGSHLPADPASNNPPNTMDQAVVNGHGIYNCGLYLLSLQILSTLTPQAARLGVDEATPEIQKELD EELAAAKEEFERIFWNPATGRYRYCDGTGGIGDRTGTIRGRFKPVPPPDAIWLESFAGQLVAMELGLPDVVDLDHARTHL KNTLDSFVRFRDPEGNLMGGPIILKPDFSIYPSSLRTTEINEVIPGIAFLAAAGAFRIGAKVKDKDITEKALKLGEGCAL QIYDIESNGYAFATPESWFVDDHHISRFPGYTRTRSVWSLYDAVSEISVKKPS
Specific function: Unknown
COG id: COG4354
COG function: function code G; Predicted bile acid beta-glucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24308251, Length=775, Percent_Identity=22.1935483870968, Blast_Score=94, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562976, Length=393, Percent_Identity=22.64631043257, Blast_Score=84, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71992723, Length=787, Percent_Identity=22.2363405336722, Blast_Score=83, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71992731, Length=787, Percent_Identity=22.2363405336722, Blast_Score=83, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71992715, Length=787, Percent_Identity=22.2363405336722, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI45552032, Length=300, Percent_Identity=23, Blast_Score=84, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100880; Mature: 100749
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGERELSGAHRGGGVSRRTFVRGTAAAAGLAAFGGALAACTGSEPAAAVKPAVHPVPKAA CCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHCCHHEEECCCCCCHHHCCCCCCCCHHH YVRKLGAVPAGSCNALGDQQCRTGVPNPVFRSVGAGLSVPGLGLPLGGVGGGSFMLNQCG HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCC TFGPWNMGGQPTTEFWEMRTLAQAAFHAREEVVGGGGGVSVRTLAVPHTNTAPDRTFGDV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHH LPAWNTLKPGDGSYAVLFPFGYMTYSGFQSKVSTKIWSPIVANEDERTSMPVAFFDMLMN CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHC NPTAKPIKISVMLTFPNAPAFATGSVRTGLYSRFDRDSASGIGGVTLGSDSPENTPDTVT CCCCCCEEEEEEEECCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCC SEWTIAAHPFAGQTLTYCTSWDGSGDGSDIYAPFSAAGADGKLPNGDIDQSASAGAVAVA CCEEEEECCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE LTLEPDQTQTVRFALSWDFPQVYYDGEDATTRAVWMRRYTAFLGGKTSRTNDYVQDSYPF EEECCCCCEEEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCH RQGFTIARKELARYDDSLAAVESWWKPIAENPQVPPWLRKASLNELYHMIFNGSFWESGL HHCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC VSNTMPMSVEEGTSPRLGSAIPETHIYFHADGGDGGAQTNEVDMDSSGYLVFAKLFRSLE CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH LGRVRPLLQMVRQNPLGIGRVIQQTFRSSGPYITQTASFQNLPFSKPPTAGNPPAPPTRD HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH LGDLFADEAGDPFRDCPHKLIYRTYALIKFYDDDDLLEYGYAPMLKALTYSQFFRPTGSH HHHHHHHCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHCHHHHHHHHHHHHHHCCCCCC LPADPASNNPPNTMDQAVVNGHGIYNCGLYLLSLQILSTLTPQAARLGVDEATPEIQKEL CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH DEELAAAKEEFERIFWNPATGRYRYCDGTGGIGDRTGTIRGRFKPVPPPDAIWLESFAGQ HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC LVAMELGLPDVVDLDHARTHLKNTLDSFVRFRDPEGNLMGGPIILKPDFSIYPSSLRTTE EEEEECCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEECCEEEECCCCCCCCCCCCCCH INEVIPGIAFLAAAGAFRIGAKVKDKDITEKALKLGEGCALQIYDIESNGYAFATPESWF HHHHHHHHHHHHHHCHHEECCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCC VDDHHISRFPGYTRTRSVWSLYDAVSEISVKKPS CCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GERELSGAHRGGGVSRRTFVRGTAAAAGLAAFGGALAACTGSEPAAAVKPAVHPVPKAA CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHCCHHEEECCCCCCHHHCCCCCCCCHHH YVRKLGAVPAGSCNALGDQQCRTGVPNPVFRSVGAGLSVPGLGLPLGGVGGGSFMLNQCG HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCC TFGPWNMGGQPTTEFWEMRTLAQAAFHAREEVVGGGGGVSVRTLAVPHTNTAPDRTFGDV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHH LPAWNTLKPGDGSYAVLFPFGYMTYSGFQSKVSTKIWSPIVANEDERTSMPVAFFDMLMN CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHC NPTAKPIKISVMLTFPNAPAFATGSVRTGLYSRFDRDSASGIGGVTLGSDSPENTPDTVT CCCCCCEEEEEEEECCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCC SEWTIAAHPFAGQTLTYCTSWDGSGDGSDIYAPFSAAGADGKLPNGDIDQSASAGAVAVA CCEEEEECCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE LTLEPDQTQTVRFALSWDFPQVYYDGEDATTRAVWMRRYTAFLGGKTSRTNDYVQDSYPF EEECCCCCEEEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCH RQGFTIARKELARYDDSLAAVESWWKPIAENPQVPPWLRKASLNELYHMIFNGSFWESGL HHCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC VSNTMPMSVEEGTSPRLGSAIPETHIYFHADGGDGGAQTNEVDMDSSGYLVFAKLFRSLE CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH LGRVRPLLQMVRQNPLGIGRVIQQTFRSSGPYITQTASFQNLPFSKPPTAGNPPAPPTRD HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH LGDLFADEAGDPFRDCPHKLIYRTYALIKFYDDDDLLEYGYAPMLKALTYSQFFRPTGSH HHHHHHHCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHCHHHHHHHHHHHHHHCCCCCC LPADPASNNPPNTMDQAVVNGHGIYNCGLYLLSLQILSTLTPQAARLGVDEATPEIQKEL CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH DEELAAAKEEFERIFWNPATGRYRYCDGTGGIGDRTGTIRGRFKPVPPPDAIWLESFAGQ HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC LVAMELGLPDVVDLDHARTHLKNTLDSFVRFRDPEGNLMGGPIILKPDFSIYPSSLRTTE EEEEECCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEECCEEEECCCCCCCCCCCCCCH INEVIPGIAFLAAAGAFRIGAKVKDKDITEKALKLGEGCALQIYDIESNGYAFATPESWF HHHHHHHHHHHHHHCHHEECCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCC VDDHHISRFPGYTRTRSVWSLYDAVSEISVKKPS CCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA