| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316182
Identifier: 158316182
GI number: 158316182
Start: 5260332
End: 5261753
Strand: Reverse
Name: 158316182
Synonym: Franean1_4405
Alternate gene names: NA
Gene position: 5261753-5260332 (Counterclockwise)
Preceding gene: 158316185
Following gene: 158316181
Centisome position: 58.58
GC content: 67.65
Gene sequence:
>1422_bases ATGCCTGTACACACGGACAAGAACACGAACTACGGCCCGCCGCTGGTGAACCAGAAGTACACGCCGCTGAACGGCCCCAC CTTCGAGGCCGATGACCGGCCCCTCTACACCGGTCTGCTCAACAACCGGATGGCCATGCTCCGGGCGCTCGGCCTGATCG GTGCGGGTCTCGACCTGACAGTGCCGGACTGGCCGAGCGTCGCCCGCGCCGAGGCCGGGAGCTCGCCGCCACTGGTGGTG GTGTCCAGCGGCCGGGCCACGTGGATCCGCAGCGGCCTCGACGCCGGCAGGGACCAGCTCGCAAGCCTGAGCATCGCCGC CTTCGACAACGTCAGCGATCTGCGTGCGTTGCGGAACCAGACCGGCGCGAAGGTATCGCCGCCGTGGTACGCGCCGGACC GGGTCGGTGCCGGCCGCAACGTCTACATGGTCGTCAACATCGCCGAATACGACTACTACCAGAAGAAGCTGAAGGACACC AGGATCACCCCGGTGGGCTGGCGCTTCACCAAGGGTGTGAGCGCCCAGCGCAGCCTGACCATGCTCGGTTTCGGGGCCAC CCGGTTCGCGGCGCTGGAGTTCTGCAAGACATTGCGTCTACAAGCGCGTGAGCGGGCGGGTGCGGCGCCGTGGGACGCCG CCTGGATGATCGACGACAACGTCGTCGCGCTCACCAGCTTCCCCGGCTTCGCCGCGGTCGAGGCGGCACTGGGCAACAAT GTCTGTGCGGGTTTCCATGGTGGTACCCAGGCCCTGTCACAGGCGCGGAACAAGGGCTGGGCGGATGGCGAGTGGAACGC CGGGCGCCGGGGACAGGAGGACAGGCTGCCGGCGGCGGAACGGCTGGGAATCATCCAGCAGGCCGCGTTGTGGAACATCG CCTACTGCGACGACAGACGGCTCAACTTCGGCCCGCCGTTCATCACCTCGGCCGAGGATCTGAGCATCATCAACTACTTC AACCATGAAGGCATTCCGTACCAGTTCTACAACGGCATCGGCGTACGCAAGGAGATCCCGGAGTCGGACACAACCGGTGG CTTGGCGAAGGTGCACAGCGGCCGGCAGAGTCTGACCCGGTGGATCGCCGCGGCGGAGAGCGCCGACTTCACTCCACCGG GCGGTTCCCCACCGCCCCCGATCCGGGTGCAGCCCCGCAACCCCGACGACGGCGGCGAGCAGACGCTGAGCACGTTCATC ACCACGCGGGTGCTGCCGAAGGCGTCCGCCGAAATTTCGGCGAAGGCAAACAACCTGGACACCCAGGCGCAGGCCAAGAG CCAGGCGGTGGAACAGCTCACGTCCGGCGCGCTGAACGGCGGGCTGGTGGACGCCGCCGCCACCACGGCCACCTTCTACC TCAACGGCACCGGCCAGCAGACGGTGCAGCTGCGGAACCGTCCCTCGCGGGACCGCTCATGA
Upstream 100 bases:
>100_bases GCCAGCCGCCCGCGCCGCACCGACGGTAGCGACGAATGAACTAAACGTGCATTTTCCCGGTAGAGCCCTGATCCGCTGAA GAACTTCCCCCGGGTGAGTG
Downstream 100 bases:
>100_bases GCGCGCCCTTCACCGACCTGACCGCGCTGGCCGCCCATCTGCGCGAGCTGGCCCAGGCACACCAACCGATCGTTCTGGAC GACACGATCCTGGCGGCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MPVHTDKNTNYGPPLVNQKYTPLNGPTFEADDRPLYTGLLNNRMAMLRALGLIGAGLDLTVPDWPSVARAEAGSSPPLVV VSSGRATWIRSGLDAGRDQLASLSIAAFDNVSDLRALRNQTGAKVSPPWYAPDRVGAGRNVYMVVNIAEYDYYQKKLKDT RITPVGWRFTKGVSAQRSLTMLGFGATRFAALEFCKTLRLQARERAGAAPWDAAWMIDDNVVALTSFPGFAAVEAALGNN VCAGFHGGTQALSQARNKGWADGEWNAGRRGQEDRLPAAERLGIIQQAALWNIAYCDDRRLNFGPPFITSAEDLSIINYF NHEGIPYQFYNGIGVRKEIPESDTTGGLAKVHSGRQSLTRWIAAAESADFTPPGGSPPPPIRVQPRNPDDGGEQTLSTFI TTRVLPKASAEISAKANNLDTQAQAKSQAVEQLTSGALNGGLVDAAATTATFYLNGTGQQTVQLRNRPSRDRS
Sequences:
>Translated_473_residues MPVHTDKNTNYGPPLVNQKYTPLNGPTFEADDRPLYTGLLNNRMAMLRALGLIGAGLDLTVPDWPSVARAEAGSSPPLVV VSSGRATWIRSGLDAGRDQLASLSIAAFDNVSDLRALRNQTGAKVSPPWYAPDRVGAGRNVYMVVNIAEYDYYQKKLKDT RITPVGWRFTKGVSAQRSLTMLGFGATRFAALEFCKTLRLQARERAGAAPWDAAWMIDDNVVALTSFPGFAAVEAALGNN VCAGFHGGTQALSQARNKGWADGEWNAGRRGQEDRLPAAERLGIIQQAALWNIAYCDDRRLNFGPPFITSAEDLSIINYF NHEGIPYQFYNGIGVRKEIPESDTTGGLAKVHSGRQSLTRWIAAAESADFTPPGGSPPPPIRVQPRNPDDGGEQTLSTFI TTRVLPKASAEISAKANNLDTQAQAKSQAVEQLTSGALNGGLVDAAATTATFYLNGTGQQTVQLRNRPSRDRS >Mature_472_residues PVHTDKNTNYGPPLVNQKYTPLNGPTFEADDRPLYTGLLNNRMAMLRALGLIGAGLDLTVPDWPSVARAEAGSSPPLVVV SSGRATWIRSGLDAGRDQLASLSIAAFDNVSDLRALRNQTGAKVSPPWYAPDRVGAGRNVYMVVNIAEYDYYQKKLKDTR ITPVGWRFTKGVSAQRSLTMLGFGATRFAALEFCKTLRLQARERAGAAPWDAAWMIDDNVVALTSFPGFAAVEAALGNNV CAGFHGGTQALSQARNKGWADGEWNAGRRGQEDRLPAAERLGIIQQAALWNIAYCDDRRLNFGPPFITSAEDLSIINYFN HEGIPYQFYNGIGVRKEIPESDTTGGLAKVHSGRQSLTRWIAAAESADFTPPGGSPPPPIRVQPRNPDDGGEQTLSTFIT TRVLPKASAEISAKANNLDTQAQAKSQAVEQLTSGALNGGLVDAAATTATFYLNGTGQQTVQLRNRPSRDRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51064; Mature: 50933
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVHTDKNTNYGPPLVNQKYTPLNGPTFEADDRPLYTGLLNNRMAMLRALGLIGAGLDLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE VPDWPSVARAEAGSSPPLVVVSSGRATWIRSGLDAGRDQLASLSIAAFDNVSDLRALRNQ CCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHCHHHHHHEEEHHHCCHHHHHHHHHC TGAKVSPPWYAPDRVGAGRNVYMVVNIAEYDYYQKKLKDTRITPVGWRFTKGVSAQRSLT CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCEEE MLGFGATRFAALEFCKTLRLQARERAGAAPWDAAWMIDDNVVALTSFPGFAAVEAALGNN EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHCCC VCAGFHGGTQALSQARNKGWADGEWNAGRRGQEDRLPAAERLGIIQQAALWNIAYCDDRR EEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCC LNFGPPFITSAEDLSIINYFNHEGIPYQFYNGIGVRKEIPESDTTGGLAKVHSGRQSLTR CCCCCCCCCCCCCCHHEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHH WIAAAESADFTPPGGSPPPPIRVQPRNPDDGGEQTLSTFITTRVLPKASAEISAKANNLD HHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCC TQAQAKSQAVEQLTSGALNGGLVDAAATTATFYLNGTGQQTVQLRNRPSRDRS HHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEECCCCEEEEECCCCCCCCC >Mature Secondary Structure PVHTDKNTNYGPPLVNQKYTPLNGPTFEADDRPLYTGLLNNRMAMLRALGLIGAGLDLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE VPDWPSVARAEAGSSPPLVVVSSGRATWIRSGLDAGRDQLASLSIAAFDNVSDLRALRNQ CCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHCHHHHHHEEEHHHCCHHHHHHHHHC TGAKVSPPWYAPDRVGAGRNVYMVVNIAEYDYYQKKLKDTRITPVGWRFTKGVSAQRSLT CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCEEE MLGFGATRFAALEFCKTLRLQARERAGAAPWDAAWMIDDNVVALTSFPGFAAVEAALGNN EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHCCC VCAGFHGGTQALSQARNKGWADGEWNAGRRGQEDRLPAAERLGIIQQAALWNIAYCDDRR EEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCC LNFGPPFITSAEDLSIINYFNHEGIPYQFYNGIGVRKEIPESDTTGGLAKVHSGRQSLTR CCCCCCCCCCCCCCHHEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHH WIAAAESADFTPPGGSPPPPIRVQPRNPDDGGEQTLSTFITTRVLPKASAEISAKANNLD HHHHHCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCC TQAQAKSQAVEQLTSGALNGGLVDAAATTATFYLNGTGQQTVQLRNRPSRDRS HHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEECCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA