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The map label for this gene is ydeS [H]

Identifier: 158316121

GI number: 158316121

Start: 5183477

End: 5184100

Strand: Reverse

Name: ydeS [H]

Synonym: Franean1_4339

Alternate gene names: 158316121

Gene position: 5184100-5183477 (Counterclockwise)

Preceding gene: 158316124

Following gene: 158316115

Centisome position: 57.72

GC content: 72.44

Gene sequence:

>624_bases
ATGATACGCCCGCGGTCCCGGCCGGGTCGCGCTCCTAGACTCACGTGGATGACGGGCGGGCGCCGGCGCAGTGAGAGCTC
GCGGCGGGCGATCCTCGACGCGGCCCGCGGCCTGCTGCTCGAACGCGGTTACGAACGGTTGACGATCGACGCCGTCGCCG
CCCAGGCCGGCGTCGGAAAGCAGACGATCTATCGCTGGTGGGGGTCGAAGGGCGCCGTCGTCGCCGATGCGGTGCTCGAG
GGCGGGCTCGTGCCACCGTTCGTCCCCTTGCCCGACACGGGAGACATCGAGGCCGATCTGCGCGCCTGGCTGCGGGCCTG
GACCGCGCATCTGGCCTCCGGTGTGGGCACGAGCCTCATCCTCGCCCTCACGGCGGCCACGGCCGAGGACCGCGCCGTCG
CCGATGTCCTCTACGAGCGCTTCACCGGACCCCACGAGCAGCTCCTGTGCGACCGCCTGGAGAGTGCCCGCGCGGCGGGT
CAGCTCGGGTCGCAGGTGCCGGTCCCGACGATCGCCGGCGTGCTGATCGGTTCCCTGCTTTATCGCGTCCTCAGCAGGCA
GGCACCGCCGACGGCGGACGACGCCGACATGGTCGTGCGCCTGGTGCTCGCCGGGGTTGCCTGA

Upstream 100 bases:

>100_bases
GCGACACCCATGCCGCCCGTGCCGATGACCACCAGTACCTCGTTCGGCATGCCTCAAGCTCCCCACGTCCAATTCCGAGA
CGACCGGTCTCGGATTAGGG

Downstream 100 bases:

>100_bases
TCTGGACCCATCTCCCTGTCGAGCATCGGTGCGGCACCCCCGTGGTACAGCCCAACGGTCATCCCGGACTGGTGTTCAGT
GGGCCTTGTCGAACGCTTCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MIRPRSRPGRAPRLTWMTGGRRRSESSRRAILDAARGLLLERGYERLTIDAVAAQAGVGKQTIYRWWGSKGAVVADAVLE
GGLVPPFVPLPDTGDIEADLRAWLRAWTAHLASGVGTSLILALTAATAEDRAVADVLYERFTGPHEQLLCDRLESARAAG
QLGSQVPVPTIAGVLIGSLLYRVLSRQAPPTADDADMVVRLVLAGVA

Sequences:

>Translated_207_residues
MIRPRSRPGRAPRLTWMTGGRRRSESSRRAILDAARGLLLERGYERLTIDAVAAQAGVGKQTIYRWWGSKGAVVADAVLE
GGLVPPFVPLPDTGDIEADLRAWLRAWTAHLASGVGTSLILALTAATAEDRAVADVLYERFTGPHEQLLCDRLESARAAG
QLGSQVPVPTIAGVLIGSLLYRVLSRQAPPTADDADMVVRLVLAGVA
>Mature_207_residues
MIRPRSRPGRAPRLTWMTGGRRRSESSRRAILDAARGLLLERGYERLTIDAVAAQAGVGKQTIYRWWGSKGAVVADAVLE
GGLVPPFVPLPDTGDIEADLRAWLRAWTAHLASGVGTSLILALTAATAEDRAVADVLYERFTGPHEQLLCDRLESARAAG
QLGSQVPVPTIAGVLIGSLLYRVLSRQAPPTADDADMVVRLVLAGVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22141; Mature: 22141

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPRSRPGRAPRLTWMTGGRRRSESSRRAILDAARGLLLERGYERLTIDAVAAQAGVGK
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
QTIYRWWGSKGAVVADAVLEGGLVPPFVPLPDTGDIEADLRAWLRAWTAHLASGVGTSLI
HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LALTAATAEDRAVADVLYERFTGPHEQLLCDRLESARAAGQLGSQVPVPTIAGVLIGSLL
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
YRVLSRQAPPTADDADMVVRLVLAGVA
HHHHHCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRPRSRPGRAPRLTWMTGGRRRSESSRRAILDAARGLLLERGYERLTIDAVAAQAGVGK
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH
QTIYRWWGSKGAVVADAVLEGGLVPPFVPLPDTGDIEADLRAWLRAWTAHLASGVGTSLI
HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LALTAATAEDRAVADVLYERFTGPHEQLLCDRLESARAAGQLGSQVPVPTIAGVLIGSLL
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
YRVLSRQAPPTADDADMVVRLVLAGVA
HHHHHCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]