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The map label for this gene is pecS [H]

Identifier: 158316024

GI number: 158316024

Start: 5050319

End: 5050837

Strand: Reverse

Name: pecS [H]

Synonym: Franean1_4242

Alternate gene names: 158316024

Gene position: 5050837-5050319 (Counterclockwise)

Preceding gene: 158316026

Following gene: 158316022

Centisome position: 56.23

GC content: 69.75

Gene sequence:

>519_bases
ATGGACGGCGGTACGGACGCGTGCATCAGTGGGGCGGAGCCCGACCGGATCGACGGCATCGTCGAGCAGTGGCAGAGCGA
GCGCCCCGACCTTGATCTGAGCGCGATGGGGATGTTCGCCCGGATGAAGATGTTCATCGCCGGGCTCACCGCGAGCATGG
ACGACGAGCTGGACAAGCACGGCCTGACTCCCGGCGAGTTCGACGTGCTCTCCACGCTGCGCCGCACCGGCCCGCCGTGC
GTGCTGATCCCCTCGCAGCTCTCCGCGTCGCTGATGATGTCGCGGGCCGGCATCACGAACCGGCTCGACCGGCTGGAGGC
CGCCGGCCTGGTGAAGCGCAACCTGGATCCCGACGACCGGCGCAGCTTCCGGGTCGGGCTGACAGACAAGGGCCTCGCTG
TCATCGACGACGCGCTCACCGGGCACGCCGCCAACATCGCGCGGCTGGCGAACCACCTCACCGTCGAGCAGCGGGAGCAG
TTCGACCAGGCGTTGCGCGTGCTGCTGCGCGCCCTCTAG

Upstream 100 bases:

>100_bases
GTGGCCCGGCATCTGGTTCGCTGTCGAATAGTACGCGGCCTGATAGTACAGGCTCGAATTATTTCTGGTCGAACCATCGA
TGATCAAATAAGCTCGGTGC

Downstream 100 bases:

>100_bases
ATACCGCGGGGCACGGGGCCGGCGAAGGGCGGGCGTCAGCCCCTGGTCGTCGTCGGTGCCACGAGCGGCCGGTCGGGCGC
CATGCCGCGCCGCCGCCCAC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDGGTDACISGAEPDRIDGIVEQWQSERPDLDLSAMGMFARMKMFIAGLTASMDDELDKHGLTPGEFDVLSTLRRTGPPC
VLIPSQLSASLMMSRAGITNRLDRLEAAGLVKRNLDPDDRRSFRVGLTDKGLAVIDDALTGHAANIARLANHLTVEQREQ
FDQALRVLLRAL

Sequences:

>Translated_172_residues
MDGGTDACISGAEPDRIDGIVEQWQSERPDLDLSAMGMFARMKMFIAGLTASMDDELDKHGLTPGEFDVLSTLRRTGPPC
VLIPSQLSASLMMSRAGITNRLDRLEAAGLVKRNLDPDDRRSFRVGLTDKGLAVIDDALTGHAANIARLANHLTVEQREQ
FDQALRVLLRAL
>Mature_172_residues
MDGGTDACISGAEPDRIDGIVEQWQSERPDLDLSAMGMFARMKMFIAGLTASMDDELDKHGLTPGEFDVLSTLRRTGPPC
VLIPSQLSASLMMSRAGITNRLDRLEAAGLVKRNLDPDDRRSFRVGLTDKGLAVIDDALTGHAANIARLANHLTVEQREQ
FDQALRVLLRAL

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18789; Mature: 18789

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGGTDACISGAEPDRIDGIVEQWQSERPDLDLSAMGMFARMKMFIAGLTASMDDELDKH
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLTPGEFDVLSTLRRTGPPCVLIPSQLSASLMMSRAGITNRLDRLEAAGLVKRNLDPDDR
CCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
RSFRVGLTDKGLAVIDDALTGHAANIARLANHLTVEQREQFDQALRVLLRAL
CEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDGGTDACISGAEPDRIDGIVEQWQSERPDLDLSAMGMFARMKMFIAGLTASMDDELDKH
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLTPGEFDVLSTLRRTGPPCVLIPSQLSASLMMSRAGITNRLDRLEAAGLVKRNLDPDDR
CCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
RSFRVGLTDKGLAVIDDALTGHAANIARLANHLTVEQREQFDQALRVLLRAL
CEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]