| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316026
Identifier: 158316026
GI number: 158316026
Start: 5052505
End: 5053869
Strand: Reverse
Name: 158316026
Synonym: Franean1_4244
Alternate gene names: NA
Gene position: 5053869-5052505 (Counterclockwise)
Preceding gene: 158316027
Following gene: 158316024
Centisome position: 56.27
GC content: 76.7
Gene sequence:
>1365_bases GTGGCGCGTCCGCTGCTGCCGGCGGTGGGCGCCGGTGCCGCGGTCGCCGCGGGGACGCTCTGCGCCGGCTGGCCCTACCT GCGTCACGAGCCCGCGCTGGCGGCGTTGAACATTCTCGTCGCCGGCTCGCTGACCACCGCCGGCGTCCTGCTGGCCGGGT CGGCGCTGCTGCGGCGCACCGGCGTCCTGCTCGCCGGGGCCGGTCTCGCCTGGCTCACGACATGGACGATGAGCTGGGAC ACCGGCGTACTGCCGCTGCTGGGCATCGCCGGCAGCTGCCAGTTCTACCTGCTGTTCGGCACCGCGCTGCTGCTCTACCC CGACGGGCGGTTCATCGGGCGGGCCGACCGGGCGATCGTGGTGCTGGCGGCGATCGTGCTCGGGCCGCTGATGCTGTGGA GCATCCTCGCCTCGCGGCCCGAGTGGAACGGGTACGCCCCGGACGTCTGGTGGCCCGCGCCCCTGGCCGACGAGGACGTC TTCGGTGCGATCAGCGACGCGTACCAGGTGGTCAACCCGCTGCTCGCGGTCGGTTTCGCGGTCCTGCTGATCCGACGGCT CCGGCGGGTGCGCGGCCCGGAGCGCGCCGTCGCGCCGCTGGTACTGCTCGCGGTGGGCGTGGTGATGGCCGGCGCGGCCC TGCTGGCACCGGCCATCGAGGCCGATGACCTGAGCCGGGTGCTGGGGGCGGTCGCGTCGCAGGGCGCTGTTCTGTCGGTG TTCCCGGCGATGCTGGTGGTCGCCACCGGCCGCCGCGCGCTCGGCGTGGCCACCGCCGCCGACCGGGTGCTCCGTCTCGC CGCGCCGGCGACCGTGCGCAGCGTCCGCGACGCGCTGCGTGCCGTTCTGCACGACCCGACGGTCGAGGTGCACTTCCGGT TGCCCGGCGGCGCGGGGTATGTCGACGTGGACGGCCGGCCGGCCGTCGCCCCGGTGGAACCGCGCGGTCCCCGCTGGACG CGCGACGTCCGCACCCGGGACGGCGAGCCGCTCGCCGTGGTGACGGGTGATCCCGCGCTCGGTCATCACGGTGCGTTCAC AGACGCGGCGCTGCGGGCCGGGCGCCTCGCGCTGGAGAACGCCCAGCTGCAGGTCGCCGTCCGGGCCCGGCTGGTCGAGA CGCGGGAGGCGCACCTGCGCGAGGCCGACGCGCAGGCCGCGCAGCGCCGCCGGATGGCCCGCGACCTCCACGAGGGGATG CAGCGGCGGCTCGCCGAACTCGAGCGGGCCGCCGCCGCGGCCGAGGACGCTGCGGCGGCCGACCCGGTCGCGGCGCGGAC CGTGCTGCGGCGGCTGCACGAGGGCCTGCTCGCCGCGAACCAGGAGGTCCGCGACCTGGGGCGTGGCCTGAGCCCGTGGG CGTGA
Upstream 100 bases:
>100_bases CGACGGTACTTGTCAGCGTCCCCGTCGGCGGTGCGCGCTGACGCCGCGCCCGGGGTACGTGGTGTACCCGTTGGCACGGT TGGTCCGGCGGGGGTGGGCG
Downstream 100 bases:
>100_bases TCATCCGGCGTGGACGGGCACTCCGTCGACCGCGGGGACGTCGTCCCGGCCCGCACGGACCAGCAGGATCACCGCGACCA GGGCGATCCCCACGAGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MARPLLPAVGAGAAVAAGTLCAGWPYLRHEPALAALNILVAGSLTTAGVLLAGSALLRRTGVLLAGAGLAWLTTWTMSWD TGVLPLLGIAGSCQFYLLFGTALLLYPDGRFIGRADRAIVVLAAIVLGPLMLWSILASRPEWNGYAPDVWWPAPLADEDV FGAISDAYQVVNPLLAVGFAVLLIRRLRRVRGPERAVAPLVLLAVGVVMAGAALLAPAIEADDLSRVLGAVASQGAVLSV FPAMLVVATGRRALGVATAADRVLRLAAPATVRSVRDALRAVLHDPTVEVHFRLPGGAGYVDVDGRPAVAPVEPRGPRWT RDVRTRDGEPLAVVTGDPALGHHGAFTDAALRAGRLALENAQLQVAVRARLVETREAHLREADAQAAQRRRMARDLHEGM QRRLAELERAAAAAEDAAAADPVAARTVLRRLHEGLLAANQEVRDLGRGLSPWA
Sequences:
>Translated_454_residues MARPLLPAVGAGAAVAAGTLCAGWPYLRHEPALAALNILVAGSLTTAGVLLAGSALLRRTGVLLAGAGLAWLTTWTMSWD TGVLPLLGIAGSCQFYLLFGTALLLYPDGRFIGRADRAIVVLAAIVLGPLMLWSILASRPEWNGYAPDVWWPAPLADEDV FGAISDAYQVVNPLLAVGFAVLLIRRLRRVRGPERAVAPLVLLAVGVVMAGAALLAPAIEADDLSRVLGAVASQGAVLSV FPAMLVVATGRRALGVATAADRVLRLAAPATVRSVRDALRAVLHDPTVEVHFRLPGGAGYVDVDGRPAVAPVEPRGPRWT RDVRTRDGEPLAVVTGDPALGHHGAFTDAALRAGRLALENAQLQVAVRARLVETREAHLREADAQAAQRRRMARDLHEGM QRRLAELERAAAAAEDAAAADPVAARTVLRRLHEGLLAANQEVRDLGRGLSPWA >Mature_453_residues ARPLLPAVGAGAAVAAGTLCAGWPYLRHEPALAALNILVAGSLTTAGVLLAGSALLRRTGVLLAGAGLAWLTTWTMSWDT GVLPLLGIAGSCQFYLLFGTALLLYPDGRFIGRADRAIVVLAAIVLGPLMLWSILASRPEWNGYAPDVWWPAPLADEDVF GAISDAYQVVNPLLAVGFAVLLIRRLRRVRGPERAVAPLVLLAVGVVMAGAALLAPAIEADDLSRVLGAVASQGAVLSVF PAMLVVATGRRALGVATAADRVLRLAAPATVRSVRDALRAVLHDPTVEVHFRLPGGAGYVDVDGRPAVAPVEPRGPRWTR DVRTRDGEPLAVVTGDPALGHHGAFTDAALRAGRLALENAQLQVAVRARLVETREAHLREADAQAAQRRRMARDLHEGMQ RRLAELERAAAAAEDAAAADPVAARTVLRRLHEGLLAANQEVRDLGRGLSPWA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47807; Mature: 47676
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPLLPAVGAGAAVAAGTLCAGWPYLRHEPALAALNILVAGSLTTAGVLLAGSALLRRT CCCCCCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC GVLLAGAGLAWLTTWTMSWDTGVLPLLGIAGSCQFYLLFGTALLLYPDGRFIGRADRAIV CHHEECCCHHHHHEEECCCCCCCHHHHCCCCCCEEHHHHHCCCEEECCCCEECCCHHHHH VLAAIVLGPLMLWSILASRPEWNGYAPDVWWPAPLADEDVFGAISDAYQVVNPLLAVGFA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VLLIRRLRRVRGPERAVAPLVLLAVGVVMAGAALLAPAIEADDLSRVLGAVASQGAVLSV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH FPAMLVVATGRRALGVATAADRVLRLAAPATVRSVRDALRAVLHDPTVEVHFRLPGGAGY HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCE VDVDGRPAVAPVEPRGPRWTRDVRTRDGEPLAVVTGDPALGHHGAFTDAALRAGRLALEN EECCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC AQLQVAVRARLVETREAHLREADAQAAQRRRMARDLHEGMQRRLAELERAAAAAEDAAAA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DPVAARTVLRRLHEGLLAANQEVRDLGRGLSPWA CHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC >Mature Secondary Structure ARPLLPAVGAGAAVAAGTLCAGWPYLRHEPALAALNILVAGSLTTAGVLLAGSALLRRT CCCCCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC GVLLAGAGLAWLTTWTMSWDTGVLPLLGIAGSCQFYLLFGTALLLYPDGRFIGRADRAIV CHHEECCCHHHHHEEECCCCCCCHHHHCCCCCCEEHHHHHCCCEEECCCCEECCCHHHHH VLAAIVLGPLMLWSILASRPEWNGYAPDVWWPAPLADEDVFGAISDAYQVVNPLLAVGFA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VLLIRRLRRVRGPERAVAPLVLLAVGVVMAGAALLAPAIEADDLSRVLGAVASQGAVLSV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH FPAMLVVATGRRALGVATAADRVLRLAAPATVRSVRDALRAVLHDPTVEVHFRLPGGAGY HHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCE VDVDGRPAVAPVEPRGPRWTRDVRTRDGEPLAVVTGDPALGHHGAFTDAALRAGRLALEN EECCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC AQLQVAVRARLVETREAHLREADAQAAQRRRMARDLHEGMQRRLAELERAAAAAEDAAAA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DPVAARTVLRRLHEGLLAANQEVRDLGRGLSPWA CHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA