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The map label for this gene is yfkH [H]

Identifier: 158316017

GI number: 158316017

Start: 5043664

End: 5044926

Strand: Reverse

Name: yfkH [H]

Synonym: Franean1_4235

Alternate gene names: 158316017

Gene position: 5044926-5043664 (Counterclockwise)

Preceding gene: 158316019

Following gene: 158316016

Centisome position: 56.17

GC content: 71.89

Gene sequence:

>1263_bases
GTGGGGCTTGTCTCGCCCGGGTCGAGGCGGTCGCCGCACCGGTCGGCGATCTGGCCCGGCTCGGCGGGATTTGCGACCCG
TCCGGGCGGCAACAACATCGTCATGGTGGGGATGCGCGGGAAGCGCGCCGGTGTGGGGGACAGACGGGGCGGCGAGCCGG
CGGACGAGGTGCCCACGCCGCGCCCGGCGGATGACACGACAGGTCCCGCGGCCAGCGGCGGTACGGCCAGCGGCGGTGCG
GCGGGGGGCACGGCCACCGCACCGGTCCGGCTCGGGCTGCGCTCGTGGTTCTGGGTGCTGGTGCGCACAGTCCGTGAGTT
CCGCCGGGACGATCTCCCGGACCGGGCCGCCGCGCTCACCTACTACGGGGTACTCGCGATCTTCCCCGCGCTTCTCGTAC
TGGTCTCGCTGCTCGGCGTCGTCGGGCGGCAGGCGACCGACAGCGTCCTGGAGAACCTGCAGGAACTGACACCGGGGTCG
GCCCGCGACATCGTGCACGACGCCGTCACCGGGCTGCGGGACGCCCCCGGCACGAGCGGGCTGCTCGCCGTGCTGGGTCT
CGCGGCGGCCCTGTGGTCGGCATCCGGGTACATCGCGGCCTTCATCCGAGCCGCCAACGCCATCTACGACATGCCCGAGG
GACGTCCCGTCTGGAAGGTCGCCCCGCTCCGGCTGGCCGTCACGGTGCTGCTGATGGTCCTGCTGGCCGGGAGCGCCGTG
ATCGTCGTGTTCAGCGGCGGGCTGGCGCGGCAGGTCGGCCGGATGATCGGCCTCGACGACGCGATGATCACTCTGTGGTC
GGTGGCGAAGTGGCCGGTCCTGGTCCTGTTCGTCGTGGTCATGATCGCGCTGCTGTACTGGAGCACCCCCAACGCCCGGG
TCCGCGGCTTCCGCTGGATGACGCCCGGCAGCCTGCTGGCCGTCCTGATCTGGCTGGCGGCGTCCGCGGCGTTCGCCTTC
TACGTGTCGAACTTCGGCTCGTACAACAAGACCTACGGGGCACTCGCCGGAGTGATCGTCTTTCTGGTGTGGCTGTGGCT
GTCGAACCTGGCGATCCTGCTCGGCCTGGAGTTCGACACCGAGATCGCCCGGGGACGGGCGATCTCGGTGGGCCACCCGG
AGGATCTCGAGCCCTACGTCGAACCCCGTGACACCCGTGCCTGGCCCAAGGAGATGAAGGCGTCCCTGCCGGCGAGGCGG
CGCCGGTCCTGGCTGCCCGGCCGGTGGTCCCGCCGCCGCATGGCTGGCGCTGCCGAGAGCTGA

Upstream 100 bases:

>100_bases
GGGCTCATGTCGATCACGGCGTCGTGGGCGAACGCTTGGCGCATGCGGCCCAGTATGTCGACTACCCGTCCACGGCGCCG
GTCTGTCTGATCCGTCCGCA

Downstream 100 bases:

>100_bases
CGACCTGCAGTCACAGCGAGACACGCTCGCCGGGGGGGAGCAGAACGAGCCGGTCGCGGTGACCGCGGCGGGCGAAGGCC
CCGGGGAGGCTGGCGCGGCC

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MGLVSPGSRRSPHRSAIWPGSAGFATRPGGNNIVMVGMRGKRAGVGDRRGGEPADEVPTPRPADDTTGPAASGGTASGGA
AGGTATAPVRLGLRSWFWVLVRTVREFRRDDLPDRAAALTYYGVLAIFPALLVLVSLLGVVGRQATDSVLENLQELTPGS
ARDIVHDAVTGLRDAPGTSGLLAVLGLAAALWSASGYIAAFIRAANAIYDMPEGRPVWKVAPLRLAVTVLLMVLLAGSAV
IVVFSGGLARQVGRMIGLDDAMITLWSVAKWPVLVLFVVVMIALLYWSTPNARVRGFRWMTPGSLLAVLIWLAASAAFAF
YVSNFGSYNKTYGALAGVIVFLVWLWLSNLAILLGLEFDTEIARGRAISVGHPEDLEPYVEPRDTRAWPKEMKASLPARR
RRSWLPGRWSRRRMAGAAES

Sequences:

>Translated_420_residues
MGLVSPGSRRSPHRSAIWPGSAGFATRPGGNNIVMVGMRGKRAGVGDRRGGEPADEVPTPRPADDTTGPAASGGTASGGA
AGGTATAPVRLGLRSWFWVLVRTVREFRRDDLPDRAAALTYYGVLAIFPALLVLVSLLGVVGRQATDSVLENLQELTPGS
ARDIVHDAVTGLRDAPGTSGLLAVLGLAAALWSASGYIAAFIRAANAIYDMPEGRPVWKVAPLRLAVTVLLMVLLAGSAV
IVVFSGGLARQVGRMIGLDDAMITLWSVAKWPVLVLFVVVMIALLYWSTPNARVRGFRWMTPGSLLAVLIWLAASAAFAF
YVSNFGSYNKTYGALAGVIVFLVWLWLSNLAILLGLEFDTEIARGRAISVGHPEDLEPYVEPRDTRAWPKEMKASLPARR
RRSWLPGRWSRRRMAGAAES
>Mature_419_residues
GLVSPGSRRSPHRSAIWPGSAGFATRPGGNNIVMVGMRGKRAGVGDRRGGEPADEVPTPRPADDTTGPAASGGTASGGAA
GGTATAPVRLGLRSWFWVLVRTVREFRRDDLPDRAAALTYYGVLAIFPALLVLVSLLGVVGRQATDSVLENLQELTPGSA
RDIVHDAVTGLRDAPGTSGLLAVLGLAAALWSASGYIAAFIRAANAIYDMPEGRPVWKVAPLRLAVTVLLMVLLAGSAVI
VVFSGGLARQVGRMIGLDDAMITLWSVAKWPVLVLFVVVMIALLYWSTPNARVRGFRWMTPGSLLAVLIWLAASAAFAFY
VSNFGSYNKTYGALAGVIVFLVWLWLSNLAILLGLEFDTEIARGRAISVGHPEDLEPYVEPRDTRAWPKEMKASLPARRR
RSWLPGRWSRRRMAGAAES

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 44936; Mature: 44805

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLVSPGSRRSPHRSAIWPGSAGFATRPGGNNIVMVGMRGKRAGVGDRRGGEPADEVPTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
RPADDTTGPAASGGTASGGAAGGTATAPVRLGLRSWFWVLVRTVREFRRDDLPDRAAALT
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YYGVLAIFPALLVLVSLLGVVGRQATDSVLENLQELTPGSARDIVHDAVTGLRDAPGTSG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
LLAVLGLAAALWSASGYIAAFIRAANAIYDMPEGRPVWKVAPLRLAVTVLLMVLLAGSAV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEE
IVVFSGGLARQVGRMIGLDDAMITLWSVAKWPVLVLFVVVMIALLYWSTPNARVRGFRWM
EEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
TPGSLLAVLIWLAASAAFAFYVSNFGSYNKTYGALAGVIVFLVWLWLSNLAILLGLEFDT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EIARGRAISVGHPEDLEPYVEPRDTRAWPKEMKASLPARRRRSWLPGRWSRRRMAGAAES
HHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
GLVSPGSRRSPHRSAIWPGSAGFATRPGGNNIVMVGMRGKRAGVGDRRGGEPADEVPTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
RPADDTTGPAASGGTASGGAAGGTATAPVRLGLRSWFWVLVRTVREFRRDDLPDRAAALT
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YYGVLAIFPALLVLVSLLGVVGRQATDSVLENLQELTPGSARDIVHDAVTGLRDAPGTSG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
LLAVLGLAAALWSASGYIAAFIRAANAIYDMPEGRPVWKVAPLRLAVTVLLMVLLAGSAV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEE
IVVFSGGLARQVGRMIGLDDAMITLWSVAKWPVLVLFVVVMIALLYWSTPNARVRGFRWM
EEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC
TPGSLLAVLIWLAASAAFAFYVSNFGSYNKTYGALAGVIVFLVWLWLSNLAILLGLEFDT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EIARGRAISVGHPEDLEPYVEPRDTRAWPKEMKASLPARRRRSWLPGRWSRRRMAGAAES
HHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]