| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gno [H]
Identifier: 158316013
GI number: 158316013
Start: 5038434
End: 5039240
Strand: Reverse
Name: gno [H]
Synonym: Franean1_4231
Alternate gene names: 158316013
Gene position: 5039240-5038434 (Counterclockwise)
Preceding gene: 158316015
Following gene: 158316012
Centisome position: 56.1
GC content: 69.89
Gene sequence:
>807_bases GTGTTCGACTTAACGGGACGTGTGGTCCTGATCAGCGGGGGGAACGCCGGGATCGGTCTGGCCTTCGCCCGGGGTGTTGC CCGGGCTGGCGGTGACGTCGTCATCTGGGGCCGCCGGGCGGAGAAGAACGCCGAGGCGGCGGGGGTGCTGTCCGGGTTCG GCCATCGGGTCCTGGCGCAGGAGGTCGACGTCAGCGACGAGGACCGCGTGGTGCGGGCGATGGCTGAGGCGGTCGAGGAG ATGGGCCGGGTCGACGGCGTCATCGCCAACGCGGGGGTGATGCGCAACGAGCGCAGCTTCCTCGACATGACCACCGGGGC GTGGCACAGCCTGCTGGCGGTGAACCAGCACGGTGCCTACCTCACCGTGCGCGAGGGTGCGCGGCACATGAAGGCCCGGT ACGACGCCGGTGACGCCGGTGGGTCGCTGCTGTTCTGCGCCAGCCTCTCAGCGTTGACCGGCAGCCCCGGCATGCAGCAC TACAACGCCTCCAAGGGCGCCATGGTCGCCATGTCGCGGGGCATCGCCGTCGAGGCGGGCCGCTACGGCGTCCGCTGCAA CGTCGTGTGCCCCGGGCACACGACGAGCGAGACAGTCCAGATCCCGGTGGGCAGCCCGTTGTCCGACCGCATCCTCGCCT ACAACCCCTCGGGCCGGATGGGTACCCCGGACGACTTCGAGGGCATCGGCGTCTACTTCATGAGCGACTGGTCGCGTTTC CACACGGGCGATCTCGTGGTCGTCGACGGCGGGTGGATGGCGAACGCCGGCAAGACCAACATCGGGGAGCTTCCGCAGTG GCCGTGA
Upstream 100 bases:
>100_bases GCGAGGGCATCCCCTTCGATCACAACATCCGCCCTCCCGGGAGCAGTCGCAGTCGAGTGGAGGCTTGACAGCGATTTATG TTTTGCTATAGCAATATATC
Downstream 100 bases:
>100_bases AAGTGCTCCGCGTCGAGGGCATGCGTGAGGACACCCGCAGTCCCGAGGAGAGAACAGCTCTGGAGTCGGCCGAGCGGCGT CCGGTCGACATGAGCGTCGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MFDLTGRVVLISGGNAGIGLAFARGVARAGGDVVIWGRRAEKNAEAAGVLSGFGHRVLAQEVDVSDEDRVVRAMAEAVEE MGRVDGVIANAGVMRNERSFLDMTTGAWHSLLAVNQHGAYLTVREGARHMKARYDAGDAGGSLLFCASLSALTGSPGMQH YNASKGAMVAMSRGIAVEAGRYGVRCNVVCPGHTTSETVQIPVGSPLSDRILAYNPSGRMGTPDDFEGIGVYFMSDWSRF HTGDLVVVDGGWMANAGKTNIGELPQWP
Sequences:
>Translated_268_residues MFDLTGRVVLISGGNAGIGLAFARGVARAGGDVVIWGRRAEKNAEAAGVLSGFGHRVLAQEVDVSDEDRVVRAMAEAVEE MGRVDGVIANAGVMRNERSFLDMTTGAWHSLLAVNQHGAYLTVREGARHMKARYDAGDAGGSLLFCASLSALTGSPGMQH YNASKGAMVAMSRGIAVEAGRYGVRCNVVCPGHTTSETVQIPVGSPLSDRILAYNPSGRMGTPDDFEGIGVYFMSDWSRF HTGDLVVVDGGWMANAGKTNIGELPQWP >Mature_268_residues MFDLTGRVVLISGGNAGIGLAFARGVARAGGDVVIWGRRAEKNAEAAGVLSGFGHRVLAQEVDVSDEDRVVRAMAEAVEE MGRVDGVIANAGVMRNERSFLDMTTGAWHSLLAVNQHGAYLTVREGARHMKARYDAGDAGGSLLFCASLSALTGSPGMQH YNASKGAMVAMSRGIAVEAGRYGVRCNVVCPGHTTSETVQIPVGSPLSDRILAYNPSGRMGTPDDFEGIGVYFMSDWSRF HTGDLVVVDGGWMANAGKTNIGELPQWP
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=29.3172690763052, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=32.7935222672065, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=27.5193798449612, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=27.4193548387097, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=29.5698924731183, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI19923817, Length=279, Percent_Identity=24.7311827956989, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=26.7716535433071, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4503301, Length=257, Percent_Identity=27.6264591439689, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=26.7716535433071, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.1587301587302, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4504505, Length=209, Percent_Identity=28.2296650717703, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI59889578, Length=212, Percent_Identity=28.3018867924528, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=26.2548262548263, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40807363, Length=240, Percent_Identity=28.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=29.5275590551181, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=29.5275590551181, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=28.515625, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=30.3030303030303, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=28.2258064516129, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=26.8774703557312, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=27.6679841897233, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=26.5625, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=26.6409266409266, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=28.740157480315, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=24.1935483870968, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=26.6393442622951, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=25.78125, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=26.4822134387352, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=23.5294117647059, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=27.1653543307087, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=26.2172284644195, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=26.7657992565056, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=25.1937984496124, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI72000259, Length=282, Percent_Identity=28.7234042553192, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=28.4046692607004, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=26.4367816091954, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=26.1992619926199, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17568967, Length=261, Percent_Identity=25.6704980842912, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=25.5555555555556, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17563726, Length=274, Percent_Identity=26.2773722627737, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=29.1005291005291, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=24.4360902255639, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=24.6323529411765, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562990, Length=271, Percent_Identity=25.4612546125461, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=23.921568627451, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193203117, Length=217, Percent_Identity=25.3456221198157, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193203115, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=24.812030075188, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=27.1375464684015, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=24.1025641025641, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17561272, Length=277, Percent_Identity=25.6317689530686, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=28.4584980237154, Blast_Score=97, Evalue=4e-21, Organism=Saccharomyces cerevisiae, GI6322861, Length=200, Percent_Identity=28.5, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=25.7028112449799, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=23.1372549019608, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=26.7175572519084, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=24.21875, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=26.8199233716475, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=25.8687258687259, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=24.904214559387, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=29.6482412060301, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=24.6031746031746, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581726, Length=198, Percent_Identity=25.2525252525253, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 28302; Mature: 28302
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDLTGRVVLISGGNAGIGLAFARGVARAGGDVVIWGRRAEKNAEAAGVLSGFGHRVLAQ CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHH EVDVSDEDRVVRAMAEAVEEMGRVDGVIANAGVMRNERSFLDMTTGAWHSLLAVNQHGAY HCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCEECCCCCEEEECCCCHHEEEEEECCCCE LTVREGARHMKARYDAGDAGGSLLFCASLSALTGSPGMQHYNASKGAMVAMSRGIAVEAG EEECCCHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEECCEEEECC RYGVRCNVVCPGHTTSETVQIPVGSPLSDRILAYNPSGRMGTPDDFEGIGVYFMSDWSRF CCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC HTGDLVVVDGGWMANAGKTNIGELPQWP CCCCEEEECCCEEECCCCCCCCCCCCCC >Mature Secondary Structure MFDLTGRVVLISGGNAGIGLAFARGVARAGGDVVIWGRRAEKNAEAAGVLSGFGHRVLAQ CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCHHHHH EVDVSDEDRVVRAMAEAVEEMGRVDGVIANAGVMRNERSFLDMTTGAWHSLLAVNQHGAY HCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCEECCCCCEEEECCCCHHEEEEEECCCCE LTVREGARHMKARYDAGDAGGSLLFCASLSALTGSPGMQHYNASKGAMVAMSRGIAVEAG EEECCCHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEECCEEEECC RYGVRCNVVCPGHTTSETVQIPVGSPLSDRILAYNPSGRMGTPDDFEGIGVYFMSDWSRF CCCEEEEEEECCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC HTGDLVVVDGGWMANAGKTNIGELPQWP CCCCEEEECCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]