| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316012
Identifier: 158316012
GI number: 158316012
Start: 5037172
End: 5038443
Strand: Reverse
Name: 158316012
Synonym: Franean1_4230
Alternate gene names: NA
Gene position: 5038443-5037172 (Counterclockwise)
Preceding gene: 158316013
Following gene: 158316011
Centisome position: 56.09
GC content: 68.55
Gene sequence:
>1272_bases GTGGCCGTGAAAGTGCTCCGCGTCGAGGGCATGCGTGAGGACACCCGCAGTCCCGAGGAGAGAACAGCTCTGGAGTCGGC CGAGCGGCGTCCGGTCGACATGAGCGTCGACCGCGTTCTCCGGATCGCGAGAACCCAGACCGGCCTGGACGACTTCGGGC CCATGGACTTCACCGAACGGCTCGGCCGGTTGCTGGCCGAGGTGGCGGCCGACGACAACGTGTGGCGGGCCCACAAGGCG ATCTTCGTCGACCACTGTGTCAAGGCCGCGGTCAACCGCCTGCTCATCCAGGACTACTGGACGCGCCACCCCGATGCGCT CGACGTGCGGATCACGCGGCCGATCAACGTCGTCGCGCTGCCCCGCTCGGGCAGCACCCACCTGGAGAACCTGGTCGCCG CGGACCGCAGGCTCCGTCACCTTCCGGTCTACCTGGCGGCCCAACCCGCACCGCGACCGACCGAGACATCCGAGCCTGGC GCCCCGGACCCCCGCTGGGCCCGTTCTGAGGCGCGATGGCGCAACGTCAGCAAGAACGAGATCATGGCCGCGATGCACGA GCACTCGCCCGACCACGCGTGCGGCGAGAACGAGCTGCAGCTCCCCGACTTCGCCAGCTACCAGTGGGAGTGGCTGGCCC AGGTGCCCGGTTTCCGTGACCACTACCTGAGCCACGACCAGACACCGCACTACCGGTACATGCGCGACGTGCTGAAGACC ATCGCGCACCAGTTCCCGGACGAGCGGCGCTGGATGGTCAAGTCGAACCAGCACAGCGAGCAGCTGGTCCCGCTGCTGGC CGTCTACCCGGACGTCACGGTCGTGATGATCCACCGGGATCCCGTGGCGACGTTGCAGTCCCTGCTCACCATGCGCGGCC TCGCGCTCAAGAACAGCCAGAAGCAGCCGGACATCGACGCGCACGTCGAGTACTGGGTGAACCGCGTCGAGCAGATGCTG CGTAGATATATGCGCGACCGGGAGCTGGTACCGAACGGGCAGCTCGTCGAGCTGCAGTTCGCCGACATCATCGCCGACGA CGTCCGGTCCGCGACGCACGTGCTCGAGCGGGCCGGCCTGCCGGTGACCGACGAGAGCGTCGCCGACATCCGCGCCTACA TAGCCTCCCACCCGCGCGGAAAGCGCGGCCGAGTGGTCTACGACCTGGAAGGCGACTTCGGTCTCGCCGCGGACGAGCTG CGGGAACGGTTCGCCTTCTACACCGACGCCTTCGCCGTCGCGGCCGAGGCGGGAAAGGGCGGCGCCCGGTGA
Upstream 100 bases:
>100_bases TCATGAGCGACTGGTCGCGTTTCCACACGGGCGATCTCGTGGTCGTCGACGGCGGGTGGATGGCGAACGCCGGCAAGACC AACATCGGGGAGCTTCCGCA
Downstream 100 bases:
>100_bases AACAGCCCCTGAACGCCCTCATCGTCAAGGAGGGGGAGGGCCAGCAGGACGCCGTCCCCGTCAACGACCACATCTTCACC TCGAAGGGCATCTCCAACAG
Product: hypothetical protein
Products: NA
Alternate protein names: Hydrolase
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MAVKVLRVEGMREDTRSPEERTALESAERRPVDMSVDRVLRIARTQTGLDDFGPMDFTERLGRLLAEVAADDNVWRAHKA IFVDHCVKAAVNRLLIQDYWTRHPDALDVRITRPINVVALPRSGSTHLENLVAADRRLRHLPVYLAAQPAPRPTETSEPG APDPRWARSEARWRNVSKNEIMAAMHEHSPDHACGENELQLPDFASYQWEWLAQVPGFRDHYLSHDQTPHYRYMRDVLKT IAHQFPDERRWMVKSNQHSEQLVPLLAVYPDVTVVMIHRDPVATLQSLLTMRGLALKNSQKQPDIDAHVEYWVNRVEQML RRYMRDRELVPNGQLVELQFADIIADDVRSATHVLERAGLPVTDESVADIRAYIASHPRGKRGRVVYDLEGDFGLAADEL RERFAFYTDAFAVAAEAGKGGAR
Sequences:
>Translated_423_residues MAVKVLRVEGMREDTRSPEERTALESAERRPVDMSVDRVLRIARTQTGLDDFGPMDFTERLGRLLAEVAADDNVWRAHKA IFVDHCVKAAVNRLLIQDYWTRHPDALDVRITRPINVVALPRSGSTHLENLVAADRRLRHLPVYLAAQPAPRPTETSEPG APDPRWARSEARWRNVSKNEIMAAMHEHSPDHACGENELQLPDFASYQWEWLAQVPGFRDHYLSHDQTPHYRYMRDVLKT IAHQFPDERRWMVKSNQHSEQLVPLLAVYPDVTVVMIHRDPVATLQSLLTMRGLALKNSQKQPDIDAHVEYWVNRVEQML RRYMRDRELVPNGQLVELQFADIIADDVRSATHVLERAGLPVTDESVADIRAYIASHPRGKRGRVVYDLEGDFGLAADEL RERFAFYTDAFAVAAEAGKGGAR >Mature_422_residues AVKVLRVEGMREDTRSPEERTALESAERRPVDMSVDRVLRIARTQTGLDDFGPMDFTERLGRLLAEVAADDNVWRAHKAI FVDHCVKAAVNRLLIQDYWTRHPDALDVRITRPINVVALPRSGSTHLENLVAADRRLRHLPVYLAAQPAPRPTETSEPGA PDPRWARSEARWRNVSKNEIMAAMHEHSPDHACGENELQLPDFASYQWEWLAQVPGFRDHYLSHDQTPHYRYMRDVLKTI AHQFPDERRWMVKSNQHSEQLVPLLAVYPDVTVVMIHRDPVATLQSLLTMRGLALKNSQKQPDIDAHVEYWVNRVEQMLR RYMRDRELVPNGQLVELQFADIIADDVRSATHVLERAGLPVTDESVADIRAYIASHPRGKRGRVVYDLEGDFGLAADELR ERFAFYTDAFAVAAEAGKGGAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48347; Mature: 48216
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVKVLRVEGMREDTRSPEERTALESAERRPVDMSVDRVLRIARTQTGLDDFGPMDFTER CCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH LGRLLAEVAADDNVWRAHKAIFVDHCVKAAVNRLLIQDYWTRHPDALDVRITRPINVVAL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEE PRSGSTHLENLVAADRRLRHLPVYLAAQPAPRPTETSEPGAPDPRWARSEARWRNVSKNE CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH IMAAMHEHSPDHACGENELQLPDFASYQWEWLAQVPGFRDHYLSHDQTPHYRYMRDVLKT HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHH IAHQFPDERRWMVKSNQHSEQLVPLLAVYPDVTVVMIHRDPVATLQSLLTMRGLALKNSQ HHHHCCCCCEEHCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCC KQPDIDAHVEYWVNRVEQMLRRYMRDRELVPNGQLVELQFADIIADDVRSATHVLERAGL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCC PVTDESVADIRAYIASHPRGKRGRVVYDLEGDFGLAADELRERFAFYTDAFAVAAEAGKG CCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC GAR CCC >Mature Secondary Structure AVKVLRVEGMREDTRSPEERTALESAERRPVDMSVDRVLRIARTQTGLDDFGPMDFTER CEEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH LGRLLAEVAADDNVWRAHKAIFVDHCVKAAVNRLLIQDYWTRHPDALDVRITRPINVVAL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEE PRSGSTHLENLVAADRRLRHLPVYLAAQPAPRPTETSEPGAPDPRWARSEARWRNVSKNE CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH IMAAMHEHSPDHACGENELQLPDFASYQWEWLAQVPGFRDHYLSHDQTPHYRYMRDVLKT HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHH IAHQFPDERRWMVKSNQHSEQLVPLLAVYPDVTVVMIHRDPVATLQSLLTMRGLALKNSQ HHHHCCCCCEEHCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCC KQPDIDAHVEYWVNRVEQMLRRYMRDRELVPNGQLVELQFADIIADDVRSATHVLERAGL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCC PVTDESVADIRAYIASHPRGKRGRVVYDLEGDFGLAADELRERFAFYTDAFAVAAEAGKG CCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC GAR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA