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The map label for this gene is cspD [C]

Identifier: 158315982

GI number: 158315982

Start: 5001590

End: 5002030

Strand: Reverse

Name: cspD [C]

Synonym: Franean1_4200

Alternate gene names: 158315982

Gene position: 5002030-5001590 (Counterclockwise)

Preceding gene: 158315984

Following gene: 158315980

Centisome position: 55.69

GC content: 69.16

Gene sequence:

>441_bases
GTGAGTACGGGAAAAGTACTTCGTTTTGATCATGTGCGTGGCTACGGGTTCCTTGCGCCCAGCGACGGCGGCGAGGATGT
CTTCCTGCACGCGAACGATCTCCTCGTCGAGAAGAGTCTGGTAGTGCCGGGCGTGGTTATGGAGTTCGAGGTCGAGGAGA
GCGACCGCGGCCGGAAGGCGTCGGCGGCCCGGATCCTGCGGGGCTCGGCGACGGGCTCGGTCGTCGGGCCGGCGGCCGTC
ACGACCGCCCCGGCGCCGGTGGTCTCCCGCCACGACGATGGCGGCGACGGGCTGTGCGACGTCCTGCCGGCCGAGGAGTT
CACGCAGGAGGTCACCGAGGTCCTGCTGCAGACCGAGCCGTCGCTGACCGGCGCGCAGATCCTGCACATCCGCCGCCAGC
TCGCCGACGTCGCCCGCAAGTACGGGTGGGTGGAGAACTGA

Upstream 100 bases:

>100_bases
TAAGATGACTGGCGACTGCCACGGTTCCGTCTGGGGTGACTGGCGGGTGCGGTCGGCAGTGGGCCAGATCATGGGGTTTC
TCAGGGGCTGTGGGTGAGTT

Downstream 100 bases:

>100_bases
CGCTCCGGGCGGCACCCGTCGGCTGAGCCTGCCGCTCAGCCGGCCATCCCGGCCTGCCGGGAGTCGTCGATCTCCGGGGA
GTAGACGACGAGGTTGCCCT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: Cold Shock Protein

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSTGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVEKSLVVPGVVMEFEVEESDRGRKASAARILRGSATGSVVGPAAV
TTAPAPVVSRHDDGGDGLCDVLPAEEFTQEVTEVLLQTEPSLTGAQILHIRRQLADVARKYGWVEN

Sequences:

>Translated_146_residues
MSTGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVEKSLVVPGVVMEFEVEESDRGRKASAARILRGSATGSVVGPAAV
TTAPAPVVSRHDDGGDGLCDVLPAEEFTQEVTEVLLQTEPSLTGAQILHIRRQLADVARKYGWVEN
>Mature_145_residues
STGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVEKSLVVPGVVMEFEVEESDRGRKASAARILRGSATGSVVGPAAVT
TAPAPVVSRHDDGGDGLCDVLPAEEFTQEVTEVLLQTEPSLTGAQILHIRRQLADVARKYGWVEN

Specific function: Inhibits DNA Replication At Both Initiation And Elongation Steps, Most Probably By Binding To The Opened, Single- Stranded Regions At Replication Forks. Plays A Regulatory Role In Chromosomal Replication In Nutrient-Depleted Cells. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15627; Mature: 15496

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVEKSLVVPGVVMEFEVEESDRGRKA
CCCCCEEEEECCCCEEEECCCCCCCEEEEECCCCEEECCCCCCCEEEEEEECCCCCCCHH
SAARILRGSATGSVVGPAAVTTAPAPVVSRHDDGGDGLCDVLPAEEFTQEVTEVLLQTEP
HHHHHHHCCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
SLTGAQILHIRRQLADVARKYGWVEN
CCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVEKSLVVPGVVMEFEVEESDRGRKA
CCCCEEEEECCCCEEEECCCCCCCEEEEECCCCEEECCCCCCCEEEEEEECCCCCCCHH
SAARILRGSATGSVVGPAAVTTAPAPVVSRHDDGGDGLCDVLPAEEFTQEVTEVLLQTEP
HHHHHHHCCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
SLTGAQILHIRRQLADVARKYGWVEN
CCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA