Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 158315966

GI number: 158315966

Start: 4974678

End: 4976777

Strand: Reverse

Name: cph2 [H]

Synonym: Franean1_4184

Alternate gene names: 158315966

Gene position: 4976777-4974678 (Counterclockwise)

Preceding gene: 158315967

Following gene: 158315957

Centisome position: 55.41

GC content: 79.48

Gene sequence:

>2100_bases
ATGCCGTTACGACAGGCGCCATGGCGACCCGGGCGCGGGCACGTCCCCCCCGGGCTCGGGGCGGTGGTGCGCGCCGTCCG
CCGGGCGGCGGCCCGCCGTCCGGCCGGTCTCGTCGCGGTGATCGGGACGTCTCCGGACGGGACCCGACGCCCCGCCGAGC
TTCCCGCCACCCACCCGGCTCCAGCCCCGATCCCGACGCGTCCCGCTCCGGCCCGGGTCGCGCCCGCACGGGCCGAGCCG
CTGCCGATGCCCGCCTTCGGGCGGGTGGCCCCGACCACGACCGGGCCGCGCGGATGGGCGGCCCGCCAGGGCCTGGTCCA
CCCCTTCCCCGCCCTGCCCAGCCTCCCCGCGGGCCCGCCCACGGCCATCGCCTCCGCCGCGGTGCCCCGCGACACCCCGT
TCCCGGAGGTGACGGGCGTCCCCCGCGCCGATCCGGGTCACGGCACCTCCGTGGGCCATGGTGCCTCGCTGTTCCTACGG
GACGCCACCTGCCCGGCCTCCGCCCTGCCCGGACCTGACAACACCCCCGGCCGCACCCCCGGCCGTGGCGGCGCCGGGCG
CCGCTCCCGCAACGAGCCGCGCCCGCGCGCACGCCCTCGGTTTCTGCCCCGCCTGCCCATGCCACCGCCACCGCGCGGGA
GCCTGCGCCCGCCGCGGTGGCGGCGGCCCGGCGGCGCCGCGGGCCTGCCGCGGCCGCCCGCCGAGCTGATCGGCATCCTC
GCGGTCGAGGCGCTGTTCCTGTTCGCCGCCGTCGTCCTCGTCGCGAACGCCGCCGCCGACCGCTCCCCGCCACGGCCCGC
CGAGTTCGCGACCTTCGCCGCCTTCACCGCACTGGCCGTCGTCACCGGGGTGCTGCTCACCAGCCCCGCCGCGGCCGGCG
CCGGGCAGCGCGCCGAAGGCGCCACCGCCGCCCCCCAGGACAGCGGTCCGCCCATGACCTCGACCTGGACGCTGCCGGTC
GCGCTGCTGCTGCCCCCGCTGTACGCGCTGCTCGCGCACGTCCCGCTCTGGCTGGCGACCGGGGGAGCGGGGCGGCTCGG
CCGGCCGGCGGGCCGGGGCGGCTCCCCGCCGCCGGCGCGCATCCGGCTGCACGACACCGCCGCGCTCGGTCTCGCCGGCG
CCGCCGCGGCCGCCGTCCACCACCTGATCGCACCCACGACGGACCCGCGGTCCGCGGAGCGGCTCGCCGGCTCGTCGCAC
ACCTTCGCCGCGCTGATCGCGGCGGTCGGCGTCTACGTGCTCGTCGACCGGCTGCTGCGTCCCGGTCACTGGTCCGGCGG
GCGGGAGCAGGCGGTCGCGGTCGCGGTGGAGACCGGCGCCGCGCTGATCCTCGCCGTCCTGTGGGCGGCCAGCCCACTGC
TGCTCGTCGTCGCCGCCCCGCTCGTCCTGCTGCTGCGCCGCGGGCTGGCCCACGCCGAGCTGCTCACCGCGGCCCGCACC
GACCCCAAGACCCGGCTGGCGACCATGGCCTACTGGCGGCAGGTCGCCCAGCGCGAGACCACCCGGACCCGCCGGCTGGG
ACGTCCGCTGTCGGTGCTGCTCGTGGACGTCGACCACTTCAAACAGGTCAACGACCGACACGGGCATCTCAACGGCGACG
CGGTGCTGCTCGCCGTCGCCGACGCGCTGCGCCTGGCCACCCGGCCGCAGGACCTCGTCGGCCGGTTCGGCGGGGAGGAG
TTCGTCGTGTTGCTCGCCGAGGTCGACCTCGACGCGGCGGCGGCCGTCGCCGAACGCGTCCGCCACCAGGTCGCGGGGGC
CAGCACCCGCCTCGGTCGCGCCGAGGTGACCGTCACGGTGTCGGTCGGCGTCGCCTGCACCAGCCCCGCCCGCCCCGACC
CGCTCGCCCACCAGGCAAGCCCGGCCGGCCCGGCGGACGGGACCGACGCGGCCGGTCACGGCGCGCCCGGCACCGCCACG
GAACCGGCGTTCCCCGGCCCGCGCGCCGCGGCGCCGGCCACCGACGACCTCGCCATCCTGACCGACCTGCTCGAGCGCGC
CGACGCGGCGCTCTACCAGGCGAAACGCGAAGGCCGCAACCGCGTGCGCACCGCCGGAACGGCCACAGCGGGCGGCGCGC
CACCGCGCCCCGCCCGCTGA

Upstream 100 bases:

>100_bases
CCCCGGTTCGTGAACGGATGCCCCGACAGACCTGGATACCGCGAGGTGGGCGCCGCGGGCGTCACCAGCACCGGCGGTGA
ACGAGAAGGGCCACGTGCGG

Downstream 100 bases:

>100_bases
ACTCCCCACAGCTTCCGAACTCCCCGCGGCTACCTGCTCACCCGTCTACGTGCTCAGCCGCCGGCCGCGCGCACCGTGTT
GCGCAGCAGCAGCATCGTCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 699; Mature: 698

Protein sequence:

>699_residues
MPLRQAPWRPGRGHVPPGLGAVVRAVRRAAARRPAGLVAVIGTSPDGTRRPAELPATHPAPAPIPTRPAPARVAPARAEP
LPMPAFGRVAPTTTGPRGWAARQGLVHPFPALPSLPAGPPTAIASAAVPRDTPFPEVTGVPRADPGHGTSVGHGASLFLR
DATCPASALPGPDNTPGRTPGRGGAGRRSRNEPRPRARPRFLPRLPMPPPPRGSLRPPRWRRPGGAAGLPRPPAELIGIL
AVEALFLFAAVVLVANAAADRSPPRPAEFATFAAFTALAVVTGVLLTSPAAAGAGQRAEGATAAPQDSGPPMTSTWTLPV
ALLLPPLYALLAHVPLWLATGGAGRLGRPAGRGGSPPPARIRLHDTAALGLAGAAAAAVHHLIAPTTDPRSAERLAGSSH
TFAALIAAVGVYVLVDRLLRPGHWSGGREQAVAVAVETGAALILAVLWAASPLLLVVAAPLVLLLRRGLAHAELLTAART
DPKTRLATMAYWRQVAQRETTRTRRLGRPLSVLLVDVDHFKQVNDRHGHLNGDAVLLAVADALRLATRPQDLVGRFGGEE
FVVLLAEVDLDAAAAVAERVRHQVAGASTRLGRAEVTVTVSVGVACTSPARPDPLAHQASPAGPADGTDAAGHGAPGTAT
EPAFPGPRAAAPATDDLAILTDLLERADAALYQAKREGRNRVRTAGTATAGGAPPRPAR

Sequences:

>Translated_699_residues
MPLRQAPWRPGRGHVPPGLGAVVRAVRRAAARRPAGLVAVIGTSPDGTRRPAELPATHPAPAPIPTRPAPARVAPARAEP
LPMPAFGRVAPTTTGPRGWAARQGLVHPFPALPSLPAGPPTAIASAAVPRDTPFPEVTGVPRADPGHGTSVGHGASLFLR
DATCPASALPGPDNTPGRTPGRGGAGRRSRNEPRPRARPRFLPRLPMPPPPRGSLRPPRWRRPGGAAGLPRPPAELIGIL
AVEALFLFAAVVLVANAAADRSPPRPAEFATFAAFTALAVVTGVLLTSPAAAGAGQRAEGATAAPQDSGPPMTSTWTLPV
ALLLPPLYALLAHVPLWLATGGAGRLGRPAGRGGSPPPARIRLHDTAALGLAGAAAAAVHHLIAPTTDPRSAERLAGSSH
TFAALIAAVGVYVLVDRLLRPGHWSGGREQAVAVAVETGAALILAVLWAASPLLLVVAAPLVLLLRRGLAHAELLTAART
DPKTRLATMAYWRQVAQRETTRTRRLGRPLSVLLVDVDHFKQVNDRHGHLNGDAVLLAVADALRLATRPQDLVGRFGGEE
FVVLLAEVDLDAAAAVAERVRHQVAGASTRLGRAEVTVTVSVGVACTSPARPDPLAHQASPAGPADGTDAAGHGAPGTAT
EPAFPGPRAAAPATDDLAILTDLLERADAALYQAKREGRNRVRTAGTATAGGAPPRPAR
>Mature_698_residues
PLRQAPWRPGRGHVPPGLGAVVRAVRRAAARRPAGLVAVIGTSPDGTRRPAELPATHPAPAPIPTRPAPARVAPARAEPL
PMPAFGRVAPTTTGPRGWAARQGLVHPFPALPSLPAGPPTAIASAAVPRDTPFPEVTGVPRADPGHGTSVGHGASLFLRD
ATCPASALPGPDNTPGRTPGRGGAGRRSRNEPRPRARPRFLPRLPMPPPPRGSLRPPRWRRPGGAAGLPRPPAELIGILA
VEALFLFAAVVLVANAAADRSPPRPAEFATFAAFTALAVVTGVLLTSPAAAGAGQRAEGATAAPQDSGPPMTSTWTLPVA
LLLPPLYALLAHVPLWLATGGAGRLGRPAGRGGSPPPARIRLHDTAALGLAGAAAAAVHHLIAPTTDPRSAERLAGSSHT
FAALIAAVGVYVLVDRLLRPGHWSGGREQAVAVAVETGAALILAVLWAASPLLLVVAAPLVLLLRRGLAHAELLTAARTD
PKTRLATMAYWRQVAQRETTRTRRLGRPLSVLLVDVDHFKQVNDRHGHLNGDAVLLAVADALRLATRPQDLVGRFGGEEF
VVLLAEVDLDAAAAVAERVRHQVAGASTRLGRAEVTVTVSVGVACTSPARPDPLAHQASPAGPADGTDAAGHGAPGTATE
PAFPGPRAAAPATDDLAILTDLLERADAALYQAKREGRNRVRTAGTATAGGAPPRPAR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=203, Percent_Identity=30.5418719211823, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=34.8314606741573, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1786584, Length=256, Percent_Identity=25.78125, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=289, Percent_Identity=25.2595155709343, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=32, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=108, Percent_Identity=35.1851851851852, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=149, Percent_Identity=32.2147651006711, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=111, Percent_Identity=29.7297297297297, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 71828; Mature: 71697

Theoretical pI: Translated: 12.10; Mature: 12.10

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRQAPWRPGRGHVPPGLGAVVRAVRRAAARRPAGLVAVIGTSPDGTRRPAELPATHPA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCC
PAPIPTRPAPARVAPARAEPLPMPAFGRVAPTTTGPRGWAARQGLVHPFPALPSLPAGPP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
TAIASAAVPRDTPFPEVTGVPRADPGHGTSVGHGASLFLRDATCPASALPGPDNTPGRTP
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
GRGGAGRRSRNEPRPRARPRFLPRLPMPPPPRGSLRPPRWRRPGGAAGLPRPPAELIGIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AVEALFLFAAVVLVANAAADRSPPRPAEFATFAAFTALAVVTGVLLTSPAAAGAGQRAEG
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ATAAPQDSGPPMTSTWTLPVALLLPPLYALLAHVPLWLATGGAGRLGRPAGRGGSPPPAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCE
IRLHDTAALGLAGAAAAAVHHLIAPTTDPRSAERLAGSSHTFAALIAAVGVYVLVDRLLR
EEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
PGHWSGGREQAVAVAVETGAALILAVLWAASPLLLVVAAPLVLLLRRGLAHAELLTAART
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
DPKTRLATMAYWRQVAQRETTRTRRLGRPLSVLLVDVDHFKQVNDRHGHLNGDAVLLAVA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHH
DALRLATRPQDLVGRFGGEEFVVLLAEVDLDAAAAVAERVRHQVAGASTRLGRAEVTVTV
HHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCHHCCCCEEEEEEE
SVGVACTSPARPDPLAHQASPAGPADGTDAAGHGAPGTATEPAFPGPRAAAPATDDLAIL
EECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TDLLERADAALYQAKREGRNRVRTAGTATAGGAPPRPAR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLRQAPWRPGRGHVPPGLGAVVRAVRRAAARRPAGLVAVIGTSPDGTRRPAELPATHPA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCC
PAPIPTRPAPARVAPARAEPLPMPAFGRVAPTTTGPRGWAARQGLVHPFPALPSLPAGPP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
TAIASAAVPRDTPFPEVTGVPRADPGHGTSVGHGASLFLRDATCPASALPGPDNTPGRTP
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
GRGGAGRRSRNEPRPRARPRFLPRLPMPPPPRGSLRPPRWRRPGGAAGLPRPPAELIGIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AVEALFLFAAVVLVANAAADRSPPRPAEFATFAAFTALAVVTGVLLTSPAAAGAGQRAEG
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ATAAPQDSGPPMTSTWTLPVALLLPPLYALLAHVPLWLATGGAGRLGRPAGRGGSPPPAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCE
IRLHDTAALGLAGAAAAAVHHLIAPTTDPRSAERLAGSSHTFAALIAAVGVYVLVDRLLR
EEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
PGHWSGGREQAVAVAVETGAALILAVLWAASPLLLVVAAPLVLLLRRGLAHAELLTAART
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
DPKTRLATMAYWRQVAQRETTRTRRLGRPLSVLLVDVDHFKQVNDRHGHLNGDAVLLAVA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHH
DALRLATRPQDLVGRFGGEEFVVLLAEVDLDAAAAVAERVRHQVAGASTRLGRAEVTVTV
HHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCHHCCCCEEEEEEE
SVGVACTSPARPDPLAHQASPAGPADGTDAAGHGAPGTATEPAFPGPRAAAPATDDLAIL
EECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TDLLERADAALYQAKREGRNRVRTAGTATAGGAPPRPAR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]