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The map label for this gene is slyA [H]

Identifier: 158315869

GI number: 158315869

Start: 4865977

End: 4866534

Strand: Reverse

Name: slyA [H]

Synonym: Franean1_4084

Alternate gene names: 158315869

Gene position: 4866534-4865977 (Counterclockwise)

Preceding gene: 158315871

Following gene: 158315868

Centisome position: 54.18

GC content: 70.79

Gene sequence:

>558_bases
GTGATTGTCACCTTAGATGACAATCACTGGACGGTACACTTCCGACTCGTGAGCGACGCCCCGGCGGCCCCCTACTCCGC
GTCCCTGCCCTTCCTGTTGTCCCAGGTCGGCGCCCGCACGGCGCAGGAGTTCGCCGACCGACTGGCGCCGCTCGGCGTCT
CACCGCGCGCGTTCGGTGTGCTCAGCAACCTGACCACCGCGGCCGCAGGCCGGACCCAGCAGCAGCTCGCGGACGCGCTG
GGCATGCACCGCAACAACATGGTCGGGTTGATCGACGAGATGGAGGAGGCGGGCTGGGTCCGGCGGCGGCGCAGCGCACA
GGACCGGAGGGCCTTCGAGATCGACCTGACGCCGGCCGGCACGGCGCTCCTGGAGCAGGTCGCGGAGGTGATCCCACTGC
TGGAGGGCAAGATCGCCCGCGATCTGACCGTCGACGAGCGGCGGGTGTTCGTCGGCCTGCTGCGCCGGGTGGCCGCGACG
CTGGAGCTGCACCCGGGGATCCATCCGCACCTGGGAGCCCGGCCCCGTTCCACCTGTGCGACGCCCGAGGATTCCTAG

Upstream 100 bases:

>100_bases
GACCAGGGCTCCGGTCCGCCCGGTCGCCCCCACCACGGCGATCTTCATCTCAGCCACTCCCCACCTCGATCACACAGAAT
CGGCACGAAACACCCGTCCA

Downstream 100 bases:

>100_bases
GCCGATCACCGGCCGCCGGTATACCGATGGGCGGCACAGTTGGCGGTATGATCGCGGGGTGTCCGCCTCCGTCCCGCTGC
GGGAACCGACGTTTCTCATT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MIVTLDDNHWTVHFRLVSDAPAAPYSASLPFLLSQVGARTAQEFADRLAPLGVSPRAFGVLSNLTTAAAGRTQQQLADAL
GMHRNNMVGLIDEMEEAGWVRRRRSAQDRRAFEIDLTPAGTALLEQVAEVIPLLEGKIARDLTVDERRVFVGLLRRVAAT
LELHPGIHPHLGARPRSTCATPEDS

Sequences:

>Translated_185_residues
MIVTLDDNHWTVHFRLVSDAPAAPYSASLPFLLSQVGARTAQEFADRLAPLGVSPRAFGVLSNLTTAAAGRTQQQLADAL
GMHRNNMVGLIDEMEEAGWVRRRRSAQDRRAFEIDLTPAGTALLEQVAEVIPLLEGKIARDLTVDERRVFVGLLRRVAAT
LELHPGIHPHLGARPRSTCATPEDS
>Mature_185_residues
MIVTLDDNHWTVHFRLVSDAPAAPYSASLPFLLSQVGARTAQEFADRLAPLGVSPRAFGVLSNLTTAAAGRTQQQLADAL
GMHRNNMVGLIDEMEEAGWVRRRRSAQDRRAFEIDLTPAGTALLEQVAEVIPLLEGKIARDLTVDERRVFVGLLRRVAAT
LELHPGIHPHLGARPRSTCATPEDS

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 20219; Mature: 20219

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTLDDNHWTVHFRLVSDAPAAPYSASLPFLLSQVGARTAQEFADRLAPLGVSPRAFGV
CEEEEECCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LSNLTTAAAGRTQQQLADALGMHRNNMVGLIDEMEEAGWVRRRRSAQDRRAFEIDLTPAG
HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
TALLEQVAEVIPLLEGKIARDLTVDERRVFVGLLRRVAATLELHPGIHPHLGARPRSTCA
HHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
TPEDS
CCCCC
>Mature Secondary Structure
MIVTLDDNHWTVHFRLVSDAPAAPYSASLPFLLSQVGARTAQEFADRLAPLGVSPRAFGV
CEEEEECCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LSNLTTAAAGRTQQQLADALGMHRNNMVGLIDEMEEAGWVRRRRSAQDRRAFEIDLTPAG
HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
TALLEQVAEVIPLLEGKIARDLTVDERRVFVGLLRRVAATLELHPGIHPHLGARPRSTCA
HHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
TPEDS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA