| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315846
Identifier: 158315846
GI number: 158315846
Start: 4840722
End: 4841825
Strand: Reverse
Name: 158315846
Synonym: Franean1_4061
Alternate gene names: NA
Gene position: 4841825-4840722 (Counterclockwise)
Preceding gene: 158315850
Following gene: 158315842
Centisome position: 53.91
GC content: 76.45
Gene sequence:
>1104_bases ATGGAGTCGGTGACGGCGGGAGTCGGTCGCGAGGTGGCAGTCGAGGTCGTGACGACGGCTTCGCTCGCACCGTCCATTCA CAACACCCAGCCGTGGCGGTGGCGTCTCGCCGACGGCCGGCTGACGCTGCGGCCGGACGTCGAGCGGCGCCTCGCCGTCC TCGACCCGGACGGGCGGCAGCTCCTGGTGAGCTGCGGCGCGGCGCTGCTGCACGCCCGGCTGGCGTTCCGGGTGCTCGGC TTCGAGCCGGTGGTGGAGCTGCTGCCGGAGGCGACCGGTTCCGGCGGGCTGGAGCCGGTGCTGTCCGGTGGCCTGGTCCT CGCGTCGATGGGGATCGGCGGGCGGGCGGCGCCGACGGATTCCGACCGGCTGCTGTTCTCGGCCGCCGGGGCCCGGCACA CCGACCGTCGGCCGTTCGAGGCACGCCCGCTCGCCGGCGACCTGGTCGACCGGATGCGCCGCGCCGCCGAGTCCGAGGGC GCCTGGCTGATGCCGCTGTCGCACTCCGACCAGCGGCTGGACGCGGCGGTGGTCGCGGCCCGGGCGGACTGGGCGGAGCA GGCCGACCCCGCCTACCGGGCCGAGCTGGCGTCGTGGCGGCGTGGGCAGGGCCCGACCGCCGACGGGGTGCCGACCGGCG TGGCCTCGACCCATCACCCCGAGCGGGCCAGCGACTTCCCGCTGCGCGACTTCGACACCCGCGGCGCGCCGGGCATCGCG GCGCCGCGTTCCGAGGAGGCCGACGGCGGCGCCGACGCGGACGCGGGTCTCGCCCCGACCGTCGAACAGCGCCCGGAGGA GCTGCCGTCGGTGGAGCGCCCCGCTGTCGTCGTGGTCGGCACGGACGCCGACCAGGCGGAGGACAGGCTGCGCGCCGGGC AGGCGCTGGCGCGGGTTCTGCTCACCGTGACCGCGGCCGGCGCGGCCGCGTCGCCGATGGGCCAGCCCATCGACAGCGAC GGGTACCGTTCGGTGATCGAGCGGATGCTGAGCATCGCCGGGCACGTGCAGATGATCCTTCGGGTCGGCTATCCCCGCCG GGACGCGGTGGCCTCCGCGCTGACCCCGCGGCGCCCGATCGGCGAGATCCTGACCTTCGGTTAG
Upstream 100 bases:
>100_bases CACCCTGCGGTTGGCCCGCCGCCGACTACCGTGGACACGGGCCGTGCCGGGCACGGTGCGCCCGCAACACGCCACCGCAC GGCGAGGGGAGTTCGCGATC
Downstream 100 bases:
>100_bases CTCCTGGGCGGCGGGCCGGGGGCCCGCCGCCGAAGCCACCGGCAGCCGGCCCGTCAACCGCGGTCGAGGGCCGCGAGACC CAGGTCGAGGTCCAGGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MESVTAGVGREVAVEVVTTASLAPSIHNTQPWRWRLADGRLTLRPDVERRLAVLDPDGRQLLVSCGAALLHARLAFRVLG FEPVVELLPEATGSGGLEPVLSGGLVLASMGIGGRAAPTDSDRLLFSAAGARHTDRRPFEARPLAGDLVDRMRRAAESEG AWLMPLSHSDQRLDAAVVAARADWAEQADPAYRAELASWRRGQGPTADGVPTGVASTHHPERASDFPLRDFDTRGAPGIA APRSEEADGGADADAGLAPTVEQRPEELPSVERPAVVVVGTDADQAEDRLRAGQALARVLLTVTAAGAAASPMGQPIDSD GYRSVIERMLSIAGHVQMILRVGYPRRDAVASALTPRRPIGEILTFG
Sequences:
>Translated_367_residues MESVTAGVGREVAVEVVTTASLAPSIHNTQPWRWRLADGRLTLRPDVERRLAVLDPDGRQLLVSCGAALLHARLAFRVLG FEPVVELLPEATGSGGLEPVLSGGLVLASMGIGGRAAPTDSDRLLFSAAGARHTDRRPFEARPLAGDLVDRMRRAAESEG AWLMPLSHSDQRLDAAVVAARADWAEQADPAYRAELASWRRGQGPTADGVPTGVASTHHPERASDFPLRDFDTRGAPGIA APRSEEADGGADADAGLAPTVEQRPEELPSVERPAVVVVGTDADQAEDRLRAGQALARVLLTVTAAGAAASPMGQPIDSD GYRSVIERMLSIAGHVQMILRVGYPRRDAVASALTPRRPIGEILTFG >Mature_367_residues MESVTAGVGREVAVEVVTTASLAPSIHNTQPWRWRLADGRLTLRPDVERRLAVLDPDGRQLLVSCGAALLHARLAFRVLG FEPVVELLPEATGSGGLEPVLSGGLVLASMGIGGRAAPTDSDRLLFSAAGARHTDRRPFEARPLAGDLVDRMRRAAESEG AWLMPLSHSDQRLDAAVVAARADWAEQADPAYRAELASWRRGQGPTADGVPTGVASTHHPERASDFPLRDFDTRGAPGIA APRSEEADGGADADAGLAPTVEQRPEELPSVERPAVVVVGTDADQAEDRLRAGQALARVLLTVTAAGAAASPMGQPIDSD GYRSVIERMLSIAGHVQMILRVGYPRRDAVASALTPRRPIGEILTFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitroreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000415 [H]
Pfam domain/function: PF00881 Nitroreductase [H]
EC number: NA
Molecular weight: Translated: 38811; Mature: 38811
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESVTAGVGREVAVEVVTTASLAPSIHNTQPWRWRLADGRLTLRPDVERRLAVLDPDGRQ CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCEEEEECCCCHH LLVSCGAALLHARLAFRVLGFEPVVELLPEATGSGGLEPVLSGGLVLASMGIGGRAAPTD HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCCCCC SDRLLFSAAGARHTDRRPFEARPLAGDLVDRMRRAAESEGAWLMPLSHSDQRLDAAVVAA CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH RADWAEQADPAYRAELASWRRGQGPTADGVPTGVASTHHPERASDFPLRDFDTRGAPGIA HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APRSEEADGGADADAGLAPTVEQRPEELPSVERPAVVVVGTDADQAEDRLRAGQALARVL CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH LTVTAAGAAASPMGQPIDSDGYRSVIERMLSIAGHVQMILRVGYPRRDAVASALTPRRPI HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCH GEILTFG HHHHCCC >Mature Secondary Structure MESVTAGVGREVAVEVVTTASLAPSIHNTQPWRWRLADGRLTLRPDVERRLAVLDPDGRQ CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCEEEEECCCCHH LLVSCGAALLHARLAFRVLGFEPVVELLPEATGSGGLEPVLSGGLVLASMGIGGRAAPTD HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCCCCC SDRLLFSAAGARHTDRRPFEARPLAGDLVDRMRRAAESEGAWLMPLSHSDQRLDAAVVAA CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH RADWAEQADPAYRAELASWRRGQGPTADGVPTGVASTHHPERASDFPLRDFDTRGAPGIA HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APRSEEADGGADADAGLAPTVEQRPEELPSVERPAVVVVGTDADQAEDRLRAGQALARVL CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH LTVTAAGAAASPMGQPIDSDGYRSVIERMLSIAGHVQMILRVGYPRRDAVASALTPRRPI HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCH GEILTFG HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]