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The map label for this gene is yliC [C]

Identifier: 158315710

GI number: 158315710

Start: 4689701

End: 4690654

Strand: Reverse

Name: yliC [C]

Synonym: Franean1_3922

Alternate gene names: 158315710

Gene position: 4690654-4689701 (Counterclockwise)

Preceding gene: 158315711

Following gene: 158315709

Centisome position: 52.22

GC content: 67.4

Gene sequence:

>954_bases
ATGCTGCTCACTGTTGCGAGACGTGTAGGCCGTAGCCTGCTGGTGGTCTTACTCGTGACCATGGGGGCCGTGGCGCTACT
GAGCCTGGCTCCGGGGTCAGCGGCCTCCGTCATCCTGGGGGAGAACGCGACACCGGACGCCATCGCCGCTCTGAACGCCA
AGCTGGGACTCGATCGGCCTCTGTGGTCGCAGTACACGCACTGGCTCGGCAACGCCGTCACCGGCGACCTGGGCACCTCC
CCGGTGACCAACCAACCCGTCCTGGACGCGATCGTCGAGCGGCTGCCGGTCACCCTGCAGCTCGCCGCGATGGCTCTGGT
CTTCGCGCTGCTTGTCGCCGTGCTGCTGGCGGTGGTGTCCGCGAGCTGGCCGGGCACTCCGATCGACCGGGCGATCACCG
CGCTGTCCTCGGTGTTCCTCTCCGTACCCGCCTTCATCGCGGGCCCGGTCATGATCTACTTCTTCGCGCTGCAGGCCGGG
TGGTTCCCGGTGACGGGCTGGTCGCGCATCAGCGAGGGCCTCGGAGACAACCTCCGCAGCGCCATCCTGCCCGTCCTCGC
GATCTCCCTGACCGAGATCGCGTCCTTCCACCGGCTGCTGCGCACCGACCTGGTCGGCACGCTGCGTGAGGACTTCATCG
GGGCGGCCCGCGCCAAGGGCATGAGCCCGTCCTACGTGATGTCCCGTCACGCCCTGCGGCCGTCGTCGTTCTCCCTGGTC
ACCCTCGTGGGCATCAACCTGGGCCGGCTGATCGGCGGAACGGTGATCGTGGAATCCCTGTTCTCGCTGCCGGGCCTGGG
CCAGCTCGTCGTCTACTCGATCACTGCCCGCGACATCATCACCGTCCAGGGCATCGTCGTGTTCATCGCCGTGGTCTACG
TGGTCATCAACATGCTCGTGGATCTCAGTTACGGCTGGCTCGACCCGCGCGTCAGGAAGGCTGCCAACGCATGA

Upstream 100 bases:

>100_bases
TCTGTCCGAGAGATATCGGCGTATTCGCCGTCGGTGACGTTACGCAGACCGGTTCAGTCGTTGTCCGTGCGACCTTCGAA
GGATCAAGGAAGCGAGCTGC

Downstream 100 bases:

>100_bases
CCACCCCCGACGTGGTGGACCGCGAGGTCCACTTACCGCCGGCCCCGGCGCTGGACACGCCGATCGTCCCGGCGGTGCGA
AAGTCCCGCTCGATCCTGGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLLTVARRVGRSLLVVLLVTMGAVALLSLAPGSAASVILGENATPDAIAALNAKLGLDRPLWSQYTHWLGNAVTGDLGTS
PVTNQPVLDAIVERLPVTLQLAAMALVFALLVAVLLAVVSASWPGTPIDRAITALSSVFLSVPAFIAGPVMIYFFALQAG
WFPVTGWSRISEGLGDNLRSAILPVLAISLTEIASFHRLLRTDLVGTLREDFIGAARAKGMSPSYVMSRHALRPSSFSLV
TLVGINLGRLIGGTVIVESLFSLPGLGQLVVYSITARDIITVQGIVVFIAVVYVVINMLVDLSYGWLDPRVRKAANA

Sequences:

>Translated_317_residues
MLLTVARRVGRSLLVVLLVTMGAVALLSLAPGSAASVILGENATPDAIAALNAKLGLDRPLWSQYTHWLGNAVTGDLGTS
PVTNQPVLDAIVERLPVTLQLAAMALVFALLVAVLLAVVSASWPGTPIDRAITALSSVFLSVPAFIAGPVMIYFFALQAG
WFPVTGWSRISEGLGDNLRSAILPVLAISLTEIASFHRLLRTDLVGTLREDFIGAARAKGMSPSYVMSRHALRPSSFSLV
TLVGINLGRLIGGTVIVESLFSLPGLGQLVVYSITARDIITVQGIVVFIAVVYVVINMLVDLSYGWLDPRVRKAANA
>Mature_317_residues
MLLTVARRVGRSLLVVLLVTMGAVALLSLAPGSAASVILGENATPDAIAALNAKLGLDRPLWSQYTHWLGNAVTGDLGTS
PVTNQPVLDAIVERLPVTLQLAAMALVFALLVAVLLAVVSASWPGTPIDRAITALSSVFLSVPAFIAGPVMIYFFALQAG
WFPVTGWSRISEGLGDNLRSAILPVLAISLTEIASFHRLLRTDLVGTLREDFIGAARAKGMSPSYVMSRHALRPSSFSLV
TLVGINLGRLIGGTVIVESLFSLPGLGQLVVYSITARDIITVQGIVVFIAVVYVVINMLVDLSYGWLDPRVRKAANA

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=312, Percent_Identity=32.6923076923077, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=31.0850439882698, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1789888, Length=274, Percent_Identity=34.6715328467153, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=29.9363057324841, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=32.3262839879154, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=26.4084507042254, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=24.1509433962264, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33534; Mature: 33534

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTVARRVGRSLLVVLLVTMGAVALLSLAPGSAASVILGENATPDAIAALNAKLGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
LWSQYTHWLGNAVTGDLGTSPVTNQPVLDAIVERLPVTLQLAAMALVFALLVAVLLAVVS
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ASWPGTPIDRAITALSSVFLSVPAFIAGPVMIYFFALQAGWFPVTGWSRISEGLGDNLRS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHH
AILPVLAISLTEIASFHRLLRTDLVGTLREDFIGAARAKGMSPSYVMSRHALRPSSFSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
TLVGINLGRLIGGTVIVESLFSLPGLGQLVVYSITARDIITVQGIVVFIAVVYVVINMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DLSYGWLDPRVRKAANA
HHCCCCCCHHHHHHCCC
>Mature Secondary Structure
MLLTVARRVGRSLLVVLLVTMGAVALLSLAPGSAASVILGENATPDAIAALNAKLGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
LWSQYTHWLGNAVTGDLGTSPVTNQPVLDAIVERLPVTLQLAAMALVFALLVAVLLAVVS
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ASWPGTPIDRAITALSSVFLSVPAFIAGPVMIYFFALQAGWFPVTGWSRISEGLGDNLRS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHH
AILPVLAISLTEIASFHRLLRTDLVGTLREDFIGAARAKGMSPSYVMSRHALRPSSFSLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
TLVGINLGRLIGGTVIVESLFSLPGLGQLVVYSITARDIITVQGIVVFIAVVYVVINMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DLSYGWLDPRVRKAANA
HHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]