| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gsiD [H]
Identifier: 158315709
GI number: 158315709
Start: 4688805
End: 4689704
Strand: Reverse
Name: gsiD [H]
Synonym: Franean1_3921
Alternate gene names: 158315709
Gene position: 4689704-4688805 (Counterclockwise)
Preceding gene: 158315710
Following gene: 158315708
Centisome position: 52.21
GC content: 69.44
Gene sequence:
>900_bases ATGACCACCCCCGACGTGGTGGACCGCGAGGTCCACTTACCGCCGGCCCCGGCGCTGGACACGCCGATCGTCCCGGCGGT GCGAAAGTCCCGCTCGATCCTGGTGTACCTGGCCTACGCCTGGCTGATCGCGGTGATCGCGCTCGCCGCGCTGGCGGACG TGCTGCCGCTGGCGTCGTACTCCATTCCCATCGGGAAGCCGCGCCAGGGACCGGATTTCAGCTCGTTCGACCTGTGGCTG GGCACCGACCAGCAGGGCCGGTCGATCCTGTCGCGATGCGTGTACGGTGCGCGCGTCTCGCTCCTGGTCGGAACCGTGGC GGGCCTCATCGGGGCCGTCATCGGAACCCTGCTGGGCATGCTCGCCGGCTACCTCGGCAAGGCCGTCGACTGGATCATCC GGCTGATCACCGACGCGATGCTGGCGTTCCCGCCACTGATCCTGCTCCTGGCGCTGTCGTCCATCCTCACGCCGAGCGTG CGGACGCTGCTGGTCGGCCTGACGCTGCTGATCATCCCGACGTTCGTCCGGCTCGCGCTGGCGAACACCCTCGCCTGGTC GTCCCGCGAGTTCGTCACCGCCGCCCGCAACATGGGCGCGGGGCACGTGCGGATCCTGGTGAAGGAGATCCTGCCGAACC TGCTGCCACCACTGGGCGCGTTCCTGCCGGTCGTGATGGCCGCGCTGATCGTGGCCGAAGGGTCGCTGAGCTTCCTGGGG ATGGGCATCCCGCCGCCCCAGCCCAGCTGGGGCGGCATGATCTCCGACGGCAAGGAGGCCATCGCCGACTCCCCGCACAT GGTGCTGGTGCCGGCGATCGTCATCTTCTTCACCGTCTTCGCGCTGAACCAGGCGGGCGACCACCTGCGCAGCCGCTTCG ACCGCACGATGCGCGACTGA
Upstream 100 bases:
>100_bases GCATCGTCGTGTTCATCGCCGTGGTCTACGTGGTCATCAACATGCTCGTGGATCTCAGTTACGGCTGGCTCGACCCGCGC GTCAGGAAGGCTGCCAACGC
Downstream 100 bases:
>100_bases CGACCCGCCTGAGCAGGACGCGCGACCGAACGCACCCCACTTGGCGTGCGCGACTGGCTCTTCCCAGCGCGCACCGCCTG GGCCGTGAACAAACGGCGCT
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MTTPDVVDREVHLPPAPALDTPIVPAVRKSRSILVYLAYAWLIAVIALAALADVLPLASYSIPIGKPRQGPDFSSFDLWL GTDQQGRSILSRCVYGARVSLLVGTVAGLIGAVIGTLLGMLAGYLGKAVDWIIRLITDAMLAFPPLILLLALSSILTPSV RTLLVGLTLLIIPTFVRLALANTLAWSSREFVTAARNMGAGHVRILVKEILPNLLPPLGAFLPVVMAALIVAEGSLSFLG MGIPPPQPSWGGMISDGKEAIADSPHMVLVPAIVIFFTVFALNQAGDHLRSRFDRTMRD
Sequences:
>Translated_299_residues MTTPDVVDREVHLPPAPALDTPIVPAVRKSRSILVYLAYAWLIAVIALAALADVLPLASYSIPIGKPRQGPDFSSFDLWL GTDQQGRSILSRCVYGARVSLLVGTVAGLIGAVIGTLLGMLAGYLGKAVDWIIRLITDAMLAFPPLILLLALSSILTPSV RTLLVGLTLLIIPTFVRLALANTLAWSSREFVTAARNMGAGHVRILVKEILPNLLPPLGAFLPVVMAALIVAEGSLSFLG MGIPPPQPSWGGMISDGKEAIADSPHMVLVPAIVIFFTVFALNQAGDHLRSRFDRTMRD >Mature_298_residues TTPDVVDREVHLPPAPALDTPIVPAVRKSRSILVYLAYAWLIAVIALAALADVLPLASYSIPIGKPRQGPDFSSFDLWLG TDQQGRSILSRCVYGARVSLLVGTVAGLIGAVIGTLLGMLAGYLGKAVDWIIRLITDAMLAFPPLILLLALSSILTPSVR TLLVGLTLLIIPTFVRLALANTLAWSSREFVTAARNMGAGHVRILVKEILPNLLPPLGAFLPVVMAALIVAEGSLSFLGM GIPPPQPSWGGMISDGKEAIADSPHMVLVPAIVIFFTVFALNQAGDHLRSRFDRTMRD
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=227, Percent_Identity=38.3259911894273, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1787760, Length=216, Percent_Identity=35.1851851851852, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1789964, Length=220, Percent_Identity=41.3636363636364, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1789889, Length=216, Percent_Identity=31.4814814814815, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787498, Length=224, Percent_Identity=33.4821428571429, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1788505, Length=217, Percent_Identity=32.258064516129, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1787549, Length=259, Percent_Identity=28.1853281853282, Blast_Score=93, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31895; Mature: 31764
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPDVVDREVHLPPAPALDTPIVPAVRKSRSILVYLAYAWLIAVIALAALADVLPLASY CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SIPIGKPRQGPDFSSFDLWLGTDQQGRSILSRCVYGARVSLLVGTVAGLIGAVIGTLLGM CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAGYLGKAVDWIIRLITDAMLAFPPLILLLALSSILTPSVRTLLVGLTLLIIPTFVRLAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH ANTLAWSSREFVTAARNMGAGHVRILVKEILPNLLPPLGAFLPVVMAALIVAEGSLSFLG HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHEE MGIPPPQPSWGGMISDGKEAIADSPHMVLVPAIVIFFTVFALNQAGDHLRSRFDRTMRD CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTPDVVDREVHLPPAPALDTPIVPAVRKSRSILVYLAYAWLIAVIALAALADVLPLASY CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SIPIGKPRQGPDFSSFDLWLGTDQQGRSILSRCVYGARVSLLVGTVAGLIGAVIGTLLGM CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAGYLGKAVDWIIRLITDAMLAFPPLILLLALSSILTPSVRTLLVGLTLLIIPTFVRLAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH ANTLAWSSREFVTAARNMGAGHVRILVKEILPNLLPPLGAFLPVVMAALIVAEGSLSFLG HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHEE MGIPPPQPSWGGMISDGKEAIADSPHMVLVPAIVIFFTVFALNQAGDHLRSRFDRTMRD CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]