| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is oppD [H]
Identifier: 158315707
GI number: 158315707
Start: 4686010
End: 4687023
Strand: Reverse
Name: oppD [H]
Synonym: Franean1_3919
Alternate gene names: 158315707
Gene position: 4687023-4686010 (Counterclockwise)
Preceding gene: 158315708
Following gene: 158315706
Centisome position: 52.18
GC content: 71.6
Gene sequence:
>1014_bases ATGAGTACTGATCCTGTCCTGCAGGTGCGCAATCTGCGCGCCTACATCGGCACCCCGCGTGGAGTCGTGCGCGCCGTCGA CGACGTCTCCCTCGACCTCGACTCCGCCCAGGCCATGGGCGTGGTCGGGGAGTCCGGGTCCGGCAAGTCGGTGATGGCCC GCGCGATCATGGGCCTGATGCCGGCACGGTCCGGGTGCTCCGGCCAGGTGGTGTTCCAGGGCCGGGACCTGCTCACCCTC CCCCGCAAGCAGCGCGCCGAGATCTGGGGCAAGCAGATCGCCATGGTGTTCCAGGACCCAGGGCGCTCGCTCAACCCGGT GGTTCGGGTGGAACGGCAGCTCACCGAGGGAATGCGCAAGCACCTCGGCGTCGGCCGCTCCGAAGCTCGCGGTCGGGCCC TCGACCTTCTGCGGGAGGTCGGGGTGCCCGACCCCGAGCGGCGCCTGCGCAACTACCCGCACGAGCTCTCCGGCGGTATG CGGCAGCGAGTCATGATCGCTACCGCGCTCGCCTGCGAGCCGACGCTGCTCATCGCCGACGAGCCGACCACAGCGCTGGA CGTGACCGTCCAGCGCCAGATCCTCGACCTGTTACGCCGGGTCCAGCGCAACCACGGAATGTCCATGATCCTGATCAGCC ACGACCTGGCGGTCGTCGCCGGCCGCACCGACCGGGTCGCGGTGATGTACGCGGGGCGCCTGGCCGAGGCCGGGGCCACC CGGCAGGTCTTCGAGGCCCCCCGGCACCGCTACACCCACGCGCTGCTCGAGGCGACCCCGACCATCGACCACGAGCGGCA CGCACCGATGCGGCTCATCCAGGGCTCGCTGCCCAACCCCATCGACCCGCCCCCCGGATGCCGGTTCGCCGCGCGCTGCG GGCACGTCGACCCCAAGTGCGCCGACCCCGGGCCGCAGATGGTCTCCGTCGGCTCGGATCACGATGTCGCCTGCATCAGC CCGGTGCAGGACGGCGCCGCGGTCGTCCCCGGAGGTGAGCTCGTTGGCCGGTAG
Upstream 100 bases:
>100_bases GCGGGATCGTCCAGTACGGCAGCGGCTCGCTGCTGGTCGAGGAACTCTGGATCAAGAAGTAGTCGTAGATCCGGAGGATG GATGAGAGGTCCCTGCGCCC
Downstream 100 bases:
>100_bases CGGAACCGCCCATCTGCGCGGCGAGGACGCGCTGCTCAGCGTGCGCGACCTGGTGGTCGAATACCCGACCAAGGGCGGGG TGGTCCAGGCCGTCTCCAAG
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MSTDPVLQVRNLRAYIGTPRGVVRAVDDVSLDLDSAQAMGVVGESGSGKSVMARAIMGLMPARSGCSGQVVFQGRDLLTL PRKQRAEIWGKQIAMVFQDPGRSLNPVVRVERQLTEGMRKHLGVGRSEARGRALDLLREVGVPDPERRLRNYPHELSGGM RQRVMIATALACEPTLLIADEPTTALDVTVQRQILDLLRRVQRNHGMSMILISHDLAVVAGRTDRVAVMYAGRLAEAGAT RQVFEAPRHRYTHALLEATPTIDHERHAPMRLIQGSLPNPIDPPPGCRFAARCGHVDPKCADPGPQMVSVGSDHDVACIS PVQDGAAVVPGGELVGR
Sequences:
>Translated_337_residues MSTDPVLQVRNLRAYIGTPRGVVRAVDDVSLDLDSAQAMGVVGESGSGKSVMARAIMGLMPARSGCSGQVVFQGRDLLTL PRKQRAEIWGKQIAMVFQDPGRSLNPVVRVERQLTEGMRKHLGVGRSEARGRALDLLREVGVPDPERRLRNYPHELSGGM RQRVMIATALACEPTLLIADEPTTALDVTVQRQILDLLRRVQRNHGMSMILISHDLAVVAGRTDRVAVMYAGRLAEAGAT RQVFEAPRHRYTHALLEATPTIDHERHAPMRLIQGSLPNPIDPPPGCRFAARCGHVDPKCADPGPQMVSVGSDHDVACIS PVQDGAAVVPGGELVGR >Mature_336_residues STDPVLQVRNLRAYIGTPRGVVRAVDDVSLDLDSAQAMGVVGESGSGKSVMARAIMGLMPARSGCSGQVVFQGRDLLTLP RKQRAEIWGKQIAMVFQDPGRSLNPVVRVERQLTEGMRKHLGVGRSEARGRALDLLREVGVPDPERRLRNYPHELSGGMR QRVMIATALACEPTLLIADEPTTALDVTVQRQILDLLRRVQRNHGMSMILISHDLAVVAGRTDRVAVMYAGRLAEAGATR QVFEAPRHRYTHALLEATPTIDHERHAPMRLIQGSLPNPIDPPPGCRFAARCGHVDPKCADPGPQMVSVGSDHDVACISP VQDGAAVVPGGELVGR
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=238, Percent_Identity=27.3109243697479, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI171184400, Length=265, Percent_Identity=26.7924528301887, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9665248, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=1e-10, Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=46.1059190031153, Blast_Score=283, Evalue=2e-77, Organism=Escherichia coli, GI1789963, Length=324, Percent_Identity=45.0617283950617, Blast_Score=271, Evalue=5e-74, Organism=Escherichia coli, GI1787759, Length=332, Percent_Identity=44.2771084337349, Blast_Score=257, Evalue=8e-70, Organism=Escherichia coli, GI1787500, Length=319, Percent_Identity=41.3793103448276, Blast_Score=231, Evalue=6e-62, Organism=Escherichia coli, GI1789962, Length=328, Percent_Identity=39.3292682926829, Blast_Score=220, Evalue=1e-58, Organism=Escherichia coli, GI145693107, Length=278, Percent_Identity=43.8848920863309, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1788506, Length=263, Percent_Identity=45.2471482889734, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=36.697247706422, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI1787758, Length=298, Percent_Identity=37.9194630872483, Blast_Score=185, Evalue=3e-48, Organism=Escherichia coli, GI1789890, Length=253, Percent_Identity=35.1778656126482, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=36.2869198312236, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=38.6792452830189, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=34.2307692307692, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=30.8880308880309, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1786398, Length=262, Percent_Identity=31.6793893129771, Blast_Score=122, Evalue=5e-29, Organism=Escherichia coli, GI87081791, Length=257, Percent_Identity=31.9066147859922, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1786703, Length=238, Percent_Identity=34.0336134453782, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787712, Length=243, Percent_Identity=30.8641975308642, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=28.9473684210526, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=31.6666666666667, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI87081709, Length=256, Percent_Identity=27.34375, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=31.390134529148, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=29.3388429752066, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=34.1232227488152, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790162, Length=252, Percent_Identity=27.3809523809524, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=30.46875, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1786872, Length=243, Percent_Identity=28.8065843621399, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1786563, Length=228, Percent_Identity=32.0175438596491, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1790467, Length=236, Percent_Identity=28.3898305084746, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1788644, Length=226, Percent_Identity=33.1858407079646, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789672, Length=253, Percent_Identity=26.8774703557312, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=28.8888888888889, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=31.0810810810811, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=246, Percent_Identity=26.8292682926829, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788450, Length=244, Percent_Identity=26.6393442622951, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=29.1139240506329, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI48995001, Length=252, Percent_Identity=29.7619047619048, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=28.9592760180996, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787792, Length=243, Percent_Identity=27.9835390946502, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=25.1968503937008, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=29.1866028708134, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=26.3636363636364, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=28.5067873303167, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=29.7071129707113, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790739, Length=288, Percent_Identity=26.7361111111111, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1790525, Length=247, Percent_Identity=27.1255060728745, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786803, Length=251, Percent_Identity=24.7011952191235, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788165, Length=211, Percent_Identity=30.3317535545024, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788472, Length=246, Percent_Identity=24.390243902439, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788210, Length=245, Percent_Identity=27.3469387755102, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786981, Length=308, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=25.4098360655738, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787143, Length=241, Percent_Identity=29.045643153527, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790534, Length=206, Percent_Identity=30.0970873786408, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=234, Percent_Identity=27.3504273504274, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1789586, Length=238, Percent_Identity=24.3697478991597, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193209708, Length=224, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193202349, Length=226, Percent_Identity=27.4336283185841, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534520, Length=241, Percent_Identity=29.4605809128631, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558664, Length=248, Percent_Identity=26.2096774193548, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI212646699, Length=236, Percent_Identity=26.271186440678, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115533608, Length=208, Percent_Identity=27.8846153846154, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71992290, Length=218, Percent_Identity=29.3577981651376, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=219, Percent_Identity=25.1141552511416, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574533, Length=236, Percent_Identity=27.9661016949153, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574150, Length=217, Percent_Identity=24.4239631336406, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007328, Length=217, Percent_Identity=24.4239631336406, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24659289, Length=239, Percent_Identity=23.0125523012552, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36514; Mature: 36383
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDPVLQVRNLRAYIGTPRGVVRAVDDVSLDLDSAQAMGVVGESGSGKSVMARAIMGLM CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHC PARSGCSGQVVFQGRDLLTLPRKQRAEIWGKQIAMVFQDPGRSLNPVVRVERQLTEGMRK CCCCCCCCEEEECCCCEEECCCHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHH HLGVGRSEARGRALDLLREVGVPDPERRLRNYPHELSGGMRQRVMIATALACEPTLLIAD HHCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEEC EPTTALDVTVQRQILDLLRRVQRNHGMSMILISHDLAVVAGRTDRVAVMYAGRLAEAGAT CCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEEEECHHHHCCCH RQVFEAPRHRYTHALLEATPTIDHERHAPMRLIQGSLPNPIDPPPGCRFAARCGHVDPKC HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC ADPGPQMVSVGSDHDVACISPVQDGAAVVPGGELVGR CCCCCCEEECCCCCCEEEECCCCCCCEECCCHHHCCC >Mature Secondary Structure STDPVLQVRNLRAYIGTPRGVVRAVDDVSLDLDSAQAMGVVGESGSGKSVMARAIMGLM CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHC PARSGCSGQVVFQGRDLLTLPRKQRAEIWGKQIAMVFQDPGRSLNPVVRVERQLTEGMRK CCCCCCCCEEEECCCCEEECCCHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHH HLGVGRSEARGRALDLLREVGVPDPERRLRNYPHELSGGMRQRVMIATALACEPTLLIAD HHCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEEC EPTTALDVTVQRQILDLLRRVQRNHGMSMILISHDLAVVAGRTDRVAVMYAGRLAEAGAT CCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEEEECHHHHCCCH RQVFEAPRHRYTHALLEATPTIDHERHAPMRLIQGSLPNPIDPPPGCRFAARCGHVDPKC HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC ADPGPQMVSVGSDHDVACISPVQDGAAVVPGGELVGR CCCCCCEEECCCCCCEEEECCCCCCCEECCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]