| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315446
Identifier: 158315446
GI number: 158315446
Start: 4325862
End: 4327148
Strand: Reverse
Name: 158315446
Synonym: Franean1_3650
Alternate gene names: NA
Gene position: 4327148-4325862 (Counterclockwise)
Preceding gene: 158315448
Following gene: 158315443
Centisome position: 48.18
GC content: 68.53
Gene sequence:
>1287_bases ATGACATTCGCCGGTGACCCGAACACTCGACCGGTGCTCGCGACGCCCGCGCAGATCCTCGCCGAGGAGACCCTCCTCCA GCTGCTCGACGGCCCTGCCCTGAAGAACGTGCGAGCGGAGCTTTACGCCGAGCTGGCGGCGACACCCAGGGGGCAGTCGA AGTCGGGCGCGGCCACCCTTGACGAGGCGATGTCGCAGTGGACGAATTCGCTCGTCATGGCCGAGATCGGGAACTTTCTG CCGACCCCCGCGCCGGTGTGGGGAACGGATGACACGCCGCGTGAATGGCTCGGCCACACGCTTCCCGGTGTCGGAACCTC GGGAGACAATCCCGACGCGCTCTACCGCACCACCTTCCTCGAGGGAGACCGGCGCTACGAGGTCGTCGGCCAGTTCGACC TGGCGCGGCGGCCCGCGCAGCTCAACATCGAGCTGCACCGGGGGAACAAGGTCAGCCCCCCGCCGATCGATCTCGACAAG TCGGACCTGACGCCGCTCGCCAGCATCACCGACCGTGATCTGCAGATCGCCGCCGACGGGTCGTTCCGCATCACCATCGG CCCGGAACCGGAGAGCCCGGTGCACCTGCTGTCGGCTCCGGGCAGGCTGACCCTCGGTTCCCGCGACATGCTCGCCGACT GGGATCAGCGCCCGTGCCGCATGGAGCTGCGCCCGCTCGACGACGTGCCGCCCGGCACCTTCGATCCCGAGGAGATCGGG AAGGCCGCCAGCCGCGACCTTGCGCCCTACGTCCGCTTCTGGGCGAAGTTCCCGGAACTCTGGTTCGGCGGCCTCAAGGG CAACAAGATCACGCCTGCTCAGGGCCGCAACGGCAGCATGGCGGGCTTCATGGCGGCGCTCAGCTGGGACCTCGCCGCGG ACCAGGCCATCATCGTCACCACCGATCCGATCGGTGCCGCCTACACCGGCTTCCAGATGATGGACCCCTGGATGATCAGC GCGAACGGCAAGAAGGCCCAGGTTTCCCTCAACCGTGGCCAGACCGCGCCGAATCCGGACGGCACCTTCACCTTCGTGCT GTCACACGAGGACCCCGGCGTCGCCAACTGGCTCGACACGACCGGTCTCGACGAAGGACTCGGGCTGATCCGGTGGCAGG CCGCGCCGGCCGGCGCAACGATCGACACGAGCACCCTCGTGCGCGAGTTCAAGGTCGTCTCGCTCTCCGAGGTGGACGCG TTGCCAGATCTCCCCCGCGTCACGCCCGAGCAGCGCGCGGCGCAGCTGGCCGCGCGGGTCGAGGGATACAACAAACGGAC CCTGTAA
Upstream 100 bases:
>100_bases GCGTTGCGGTCCACCCACATTGGGGGCATTATACTGTCACTAAATATTCCCAATCGGGATAGGTGGCATATATGGAAAGC ACCCGACAGGAGTCGTCACC
Downstream 100 bases:
>100_bases GGGCCGTGAATCCCGCCGGCCGGATTCGGCTTCCCACACATCCGGACCGCGGTATCCGGAATGCGGGCGCCGCCGCCGGC CGGTGCCGGGGGCCCACCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MTFAGDPNTRPVLATPAQILAEETLLQLLDGPALKNVRAELYAELAATPRGQSKSGAATLDEAMSQWTNSLVMAEIGNFL PTPAPVWGTDDTPREWLGHTLPGVGTSGDNPDALYRTTFLEGDRRYEVVGQFDLARRPAQLNIELHRGNKVSPPPIDLDK SDLTPLASITDRDLQIAADGSFRITIGPEPESPVHLLSAPGRLTLGSRDMLADWDQRPCRMELRPLDDVPPGTFDPEEIG KAASRDLAPYVRFWAKFPELWFGGLKGNKITPAQGRNGSMAGFMAALSWDLAADQAIIVTTDPIGAAYTGFQMMDPWMIS ANGKKAQVSLNRGQTAPNPDGTFTFVLSHEDPGVANWLDTTGLDEGLGLIRWQAAPAGATIDTSTLVREFKVVSLSEVDA LPDLPRVTPEQRAAQLAARVEGYNKRTL
Sequences:
>Translated_428_residues MTFAGDPNTRPVLATPAQILAEETLLQLLDGPALKNVRAELYAELAATPRGQSKSGAATLDEAMSQWTNSLVMAEIGNFL PTPAPVWGTDDTPREWLGHTLPGVGTSGDNPDALYRTTFLEGDRRYEVVGQFDLARRPAQLNIELHRGNKVSPPPIDLDK SDLTPLASITDRDLQIAADGSFRITIGPEPESPVHLLSAPGRLTLGSRDMLADWDQRPCRMELRPLDDVPPGTFDPEEIG KAASRDLAPYVRFWAKFPELWFGGLKGNKITPAQGRNGSMAGFMAALSWDLAADQAIIVTTDPIGAAYTGFQMMDPWMIS ANGKKAQVSLNRGQTAPNPDGTFTFVLSHEDPGVANWLDTTGLDEGLGLIRWQAAPAGATIDTSTLVREFKVVSLSEVDA LPDLPRVTPEQRAAQLAARVEGYNKRTL >Mature_427_residues TFAGDPNTRPVLATPAQILAEETLLQLLDGPALKNVRAELYAELAATPRGQSKSGAATLDEAMSQWTNSLVMAEIGNFLP TPAPVWGTDDTPREWLGHTLPGVGTSGDNPDALYRTTFLEGDRRYEVVGQFDLARRPAQLNIELHRGNKVSPPPIDLDKS DLTPLASITDRDLQIAADGSFRITIGPEPESPVHLLSAPGRLTLGSRDMLADWDQRPCRMELRPLDDVPPGTFDPEEIGK AASRDLAPYVRFWAKFPELWFGGLKGNKITPAQGRNGSMAGFMAALSWDLAADQAIIVTTDPIGAAYTGFQMMDPWMISA NGKKAQVSLNRGQTAPNPDGTFTFVLSHEDPGVANWLDTTGLDEGLGLIRWQAAPAGATIDTSTLVREFKVVSLSEVDAL PDLPRVTPEQRAAQLAARVEGYNKRTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46360; Mature: 46229
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFAGDPNTRPVLATPAQILAEETLLQLLDGPALKNVRAELYAELAATPRGQSKSGAATL CCCCCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH DEAMSQWTNSLVMAEIGNFLPTPAPVWGTDDTPREWLGHTLPGVGTSGDNPDALYRTTFL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEE EGDRRYEVVGQFDLARRPAQLNIELHRGNKVSPPPIDLDKSDLTPLASITDRDLQIAADG CCCCEEEEEECHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECC SFRITIGPEPESPVHLLSAPGRLTLGSRDMLADWDQRPCRMELRPLDDVPPGTFDPEEIG EEEEEECCCCCCCEEEECCCCEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHH KAASRDLAPYVRFWAKFPELWFGGLKGNKITPAQGRNGSMAGFMAALSWDLAADQAIIVT HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEE TDPIGAAYTGFQMMDPWMISANGKKAQVSLNRGQTAPNPDGTFTFVLSHEDPGVANWLDT ECCCCCCCCCCEECCCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHH TGLDEGLGLIRWQAAPAGATIDTSTLVREFKVVSLSEVDALPDLPRVTPEQRAAQLAARV CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHEEEHHHHHCCCCCCCCCHHHHHHHHHHHH EGYNKRTL CCCCCCCC >Mature Secondary Structure TFAGDPNTRPVLATPAQILAEETLLQLLDGPALKNVRAELYAELAATPRGQSKSGAATL CCCCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH DEAMSQWTNSLVMAEIGNFLPTPAPVWGTDDTPREWLGHTLPGVGTSGDNPDALYRTTFL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEE EGDRRYEVVGQFDLARRPAQLNIELHRGNKVSPPPIDLDKSDLTPLASITDRDLQIAADG CCCCEEEEEECHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECC SFRITIGPEPESPVHLLSAPGRLTLGSRDMLADWDQRPCRMELRPLDDVPPGTFDPEEIG EEEEEECCCCCCCEEEECCCCEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHH KAASRDLAPYVRFWAKFPELWFGGLKGNKITPAQGRNGSMAGFMAALSWDLAADQAIIVT HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEE TDPIGAAYTGFQMMDPWMISANGKKAQVSLNRGQTAPNPDGTFTFVLSHEDPGVANWLDT ECCCCCCCCCCEECCCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHH TGLDEGLGLIRWQAAPAGATIDTSTLVREFKVVSLSEVDALPDLPRVTPEQRAAQLAARV CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHEEEHHHHHCCCCCCCCCHHHHHHHHHHHH EGYNKRTL CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA