| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ykvO [H]
Identifier: 158315330
GI number: 158315330
Start: 4191208
End: 4191942
Strand: Direct
Name: ykvO [H]
Synonym: Franean1_3531
Alternate gene names: 158315330
Gene position: 4191208-4191942 (Clockwise)
Preceding gene: 158315329
Following gene: 158315331
Centisome position: 46.66
GC content: 62.86
Gene sequence:
>735_bases GTGGGAAAGCTTGATGGCAAGGTTGCGGTGATCACAGGCGCGACAAGTGGTATGGCGCTGGCTGGTGCCAAGTTGTTCGT TGATGAAGGAGCTCATGTCTTCATTTCGGGCCGGCGGAAGGACGCGCTGGACGAAGCCGTCAAGCTGATCGGCCGGAACG TGACCGGCGTGCAGGCCGATTCGGCCGACCTCGACGATCTGGACCGTTTGTTCGAGACGGTCAAGCAGGAAAATGGCACG GTCGACGTGTTGTGGGCAAGTGCCGGGATGGGCGAGCAGGGCAGGCTCGGCGAGATGACGGAGGAGCACTTCGATGCCAC GTTCTCGGTGAACGCACGCGGCACGCTGTTCACGGTTCAGAAGGCGCTGCCGCTGTTCAACGATGGAGGCTCGATCTTCA TGACCGGGTCGAACGCTTCGCTCCGGGGCTACCCCGGTTGGAGTGTGTATGCAGCGAGCAAGGCCGTGCTGCCCGCCTAC GCGCGGGTGTGGGTATCCGAGTTGAGGGACAGGAAGATCCGGGTGAACGTGCTGACCCCCGGCCAGGTCGCCACGCCGAT TCTGGAGAAGGTGATGGACACGGAGATGAAGGCGCAGTTCGAGTCCGTGATCCCGCGGCGAGAGATGGGCCGCCCTGAGG AGATCGCGTCGGTCGCGTTGTTCCTCGCCTCGGACGACTCGAGCTACGTCAATGGCATGGAGCTGGTTGTCGACGGCGGC ACCACAGTGATCTGA
Upstream 100 bases:
>100_bases CTGGCACGCAACGGCGCCGGCTTCGAGATCGCCTTGGGCGCCGAAGTCCTCTGAAAATTCGGTGTACATAACATCGACAT GGCAATCAGATGGAGTGGTC
Downstream 100 bases:
>100_bases GCGCGGCGCCGGTGGTCGTCAGCGTCGCGCCGCGCGCAGGCCGAACGTCGGCACGGCGGTCTGGCGCGGCGCGGCGACGC GCCGGCGGGTACCCGAGCTG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MGKLDGKVAVITGATSGMALAGAKLFVDEGAHVFISGRRKDALDEAVKLIGRNVTGVQADSADLDDLDRLFETVKQENGT VDVLWASAGMGEQGRLGEMTEEHFDATFSVNARGTLFTVQKALPLFNDGGSIFMTGSNASLRGYPGWSVYAASKAVLPAY ARVWVSELRDRKIRVNVLTPGQVATPILEKVMDTEMKAQFESVIPRREMGRPEEIASVALFLASDDSSYVNGMELVVDGG TTVI
Sequences:
>Translated_244_residues MGKLDGKVAVITGATSGMALAGAKLFVDEGAHVFISGRRKDALDEAVKLIGRNVTGVQADSADLDDLDRLFETVKQENGT VDVLWASAGMGEQGRLGEMTEEHFDATFSVNARGTLFTVQKALPLFNDGGSIFMTGSNASLRGYPGWSVYAASKAVLPAY ARVWVSELRDRKIRVNVLTPGQVATPILEKVMDTEMKAQFESVIPRREMGRPEEIASVALFLASDDSSYVNGMELVVDGG TTVI >Mature_243_residues GKLDGKVAVITGATSGMALAGAKLFVDEGAHVFISGRRKDALDEAVKLIGRNVTGVQADSADLDDLDRLFETVKQENGTV DVLWASAGMGEQGRLGEMTEEHFDATFSVNARGTLFTVQKALPLFNDGGSIFMTGSNASLRGYPGWSVYAASKAVLPAYA RVWVSELRDRKIRVNVLTPGQVATPILEKVMDTEMKAQFESVIPRREMGRPEEIASVALFLASDDSSYVNGMELVVDGGT TVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=33.0612244897959, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=31.0483870967742, Blast_Score=120, Evalue=8e-28, Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=31.1740890688259, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=30.8333333333333, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.1428571428571, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=29.4820717131474, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=31.7460317460317, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=31.4917127071823, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=29.8755186721992, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=23.7354085603113, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=30.0518134715026, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=31.7647058823529, Blast_Score=120, Evalue=7e-29, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=31.3008130081301, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=31.0756972111554, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=30.7053941908714, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789208, Length=242, Percent_Identity=29.7520661157025, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=29.8755186721992, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=31.2757201646091, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=30.241935483871, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=28.1124497991968, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=29.5081967213115, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1786701, Length=204, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787545, Length=254, Percent_Identity=24.4094488188976, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787526, Length=240, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=25.6830601092896, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=35.0943396226415, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=29.718875502008, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=33.7037037037037, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=30.4182509505703, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=32.4528301886792, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=32.0754716981132, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=31.8181818181818, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=31.9548872180451, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=32.0754716981132, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=29.811320754717, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=31.6981132075472, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=31.5589353612167, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=31.5985130111524, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=31.8367346938775, Blast_Score=97, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.3233082706767, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=31.203007518797, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=31.5384615384615, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=27.4193548387097, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.0566037735849, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=30.2238805970149, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115534694, Length=161, Percent_Identity=33.5403726708075, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=27.7551020408163, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=25.5639097744361, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538182, Length=249, Percent_Identity=25.7028112449799, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=29.3814432989691, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=25.609756097561, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=188, Percent_Identity=27.1276595744681, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=31.3253012048193, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=32.1138211382114, Blast_Score=109, Evalue=1e-24, Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=31.6, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=32.6530612244898, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=30.8, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=30.2904564315353, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=30.952380952381, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI18859837, Length=249, Percent_Identity=28.1124497991968, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007236, Length=210, Percent_Identity=27.1428571428571, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI28571387, Length=219, Percent_Identity=28.310502283105, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI17737361, Length=250, Percent_Identity=24.8, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26179; Mature: 26048
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLDGKVAVITGATSGMALAGAKLFVDEGAHVFISGRRKDALDEAVKLIGRNVTGVQAD CCCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC SADLDDLDRLFETVKQENGTVDVLWASAGMGEQGRLGEMTEEHFDATFSVNARGTLFTVQ CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEECCCCEEEEEE KALPLFNDGGSIFMTGSNASLRGYPGWSVYAASKAVLPAYARVWVSELRDRKIRVNVLTP CCCCEECCCCEEEEECCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECC GQVATPILEKVMDTEMKAQFESVIPRREMGRPEEIASVALFLASDDSSYVNGMELVVDGG CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHEEEEEEECCCCCCCCCEEEEEECC TTVI CCCC >Mature Secondary Structure GKLDGKVAVITGATSGMALAGAKLFVDEGAHVFISGRRKDALDEAVKLIGRNVTGVQAD CCCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC SADLDDLDRLFETVKQENGTVDVLWASAGMGEQGRLGEMTEEHFDATFSVNARGTLFTVQ CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEECCCCEEEEEE KALPLFNDGGSIFMTGSNASLRGYPGWSVYAASKAVLPAYARVWVSELRDRKIRVNVLTP CCCCEECCCCEEEEECCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECC GQVATPILEKVMDTEMKAQFESVIPRREMGRPEEIASVALFLASDDSSYVNGMELVVDGG CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHEEEEEEECCCCCCCCCEEEEEECC TTVI CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]