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The map label for this gene is yncC [C]

Identifier: 158315293

GI number: 158315293

Start: 4155777

End: 4156589

Strand: Direct

Name: yncC [C]

Synonym: Franean1_3493

Alternate gene names: 158315293

Gene position: 4155777-4156589 (Clockwise)

Preceding gene: 158315292

Following gene: 158315295

Centisome position: 46.27

GC content: 76.51

Gene sequence:

>813_bases
GTGGCGACGCCCGGATACCTCGGCCCGCGCGACGGTATGCCCGGCTCGGATGAATGGGCGGGGGCTGGAGCGGGCCCGGC
GGCGGTAGCCGACGCCGGGCAGGGCCGGCCCCGCCGGCTCCGGCTGGGCGCCACCGCCCGGGACAGAGTGGCCGACGTGC
TCCGCGACGAGATCATGAGTGGCCGCCTCGGCCCGGGGGCCCGCATCGACCTGGACGAGACCGCCGCGTGGCTGGGCACG
AGCCGCACCCCCGTCCGCGAGGCGTGCCTGGCGCTCCAGTTCGAGGGCCTGGTCCGCGTCGCCCCCCGCAGCGGGGTGAC
GGTGATCGGCCTGCGCCGGCGCGACGTCGAGGACAACTTCGCCCTCATCGCCATGCTCTCCGGCGCGGCCGCGGCCTGGG
CCGCGGAACGGATCTCCGAAGCCCACCTGGCCGAGCTCCGGCACCTGGCGGCCGACGTCCGATCGGCGGTCGAGACCGGC
GGCGACCTGCGGACGGCGAACTTCCTGTTCCACCGGGCCGTCAACCAGGCCAGCGACTCGGTGCGTCTGATCGCGCTCAT
CCGCCAGACCGGGCGGATCATCCCGTGGTCGTTCTTCGACCTCGTCCCGGAGCAGGTGGGCTGCGCCCTGCGCGAGCACG
ACGACATCGTCGACGCCATCGCCGCCCACAACGGTGCCCGCGCGCGCCGGGTGTCGGAGGAGCATGTGGTCAGCGCCGGC
CGGCTCCTCGTCGCCCGGGTGTTCGGCCCCGGGCCGGCCGGGGCCGGATCGACAGCCGCCGGTCCAGCGGCGGGCGCCGG
CGCCGGCGGCTGA

Upstream 100 bases:

>100_bases
CCCGCCGTCTACTTCCGCCGCCGGTTCCACCTGCTCGGGGACGCCACCTGAGCCACTTGACGGCGCGGCTGTTCTGCTCT
TCTGATATACGCTGGTCGGC

Downstream 100 bases:

>100_bases
CGGGCGATCGCAGCCCTCGCCGCACATCAGATCCGGCCTGGGATCTTGGGGACCCGCTTCCACGCGGCCGGTCCGTTCAG
GGGCGGACACCGCTGCTGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH; Gntr Family Transcriptional Regulator; GntR Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein; Transcriptional Regulator GntR-Family

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MATPGYLGPRDGMPGSDEWAGAGAGPAAVADAGQGRPRRLRLGATARDRVADVLRDEIMSGRLGPGARIDLDETAAWLGT
SRTPVREACLALQFEGLVRVAPRSGVTVIGLRRRDVEDNFALIAMLSGAAAAWAAERISEAHLAELRHLAADVRSAVETG
GDLRTANFLFHRAVNQASDSVRLIALIRQTGRIIPWSFFDLVPEQVGCALREHDDIVDAIAAHNGARARRVSEEHVVSAG
RLLVARVFGPGPAGAGSTAAGPAAGAGAGG

Sequences:

>Translated_270_residues
MATPGYLGPRDGMPGSDEWAGAGAGPAAVADAGQGRPRRLRLGATARDRVADVLRDEIMSGRLGPGARIDLDETAAWLGT
SRTPVREACLALQFEGLVRVAPRSGVTVIGLRRRDVEDNFALIAMLSGAAAAWAAERISEAHLAELRHLAADVRSAVETG
GDLRTANFLFHRAVNQASDSVRLIALIRQTGRIIPWSFFDLVPEQVGCALREHDDIVDAIAAHNGARARRVSEEHVVSAG
RLLVARVFGPGPAGAGSTAAGPAAGAGAGG
>Mature_269_residues
ATPGYLGPRDGMPGSDEWAGAGAGPAAVADAGQGRPRRLRLGATARDRVADVLRDEIMSGRLGPGARIDLDETAAWLGTS
RTPVREACLALQFEGLVRVAPRSGVTVIGLRRRDVEDNFALIAMLSGAAAAWAAERISEAHLAELRHLAADVRSAVETGG
DLRTANFLFHRAVNQASDSVRLIALIRQTGRIIPWSFFDLVPEQVGCALREHDDIVDAIAAHNGARARRVSEEHVVSAGR
LLVARVFGPGPAGAGSTAAGPAAGAGAGG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28098; Mature: 27967

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPGYLGPRDGMPGSDEWAGAGAGPAAVADAGQGRPRRLRLGATARDRVADVLRDEIMS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHC
GRLGPGARIDLDETAAWLGTSRTPVREACLALQFEGLVRVAPRSGVTVIGLRRRDVEDNF
CCCCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCEEEEEECCCCCCCE
ALIAMLSGAAAAWAAERISEAHLAELRHLAADVRSAVETGGDLRTANFLFHRAVNQASDS
EEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
VRLIALIRQTGRIIPWSFFDLVPEQVGCALREHDDIVDAIAAHNGARARRVSEEHVVSAG
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHH
RLLVARVFGPGPAGAGSTAAGPAAGAGAGG
HEEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATPGYLGPRDGMPGSDEWAGAGAGPAAVADAGQGRPRRLRLGATARDRVADVLRDEIMS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHC
GRLGPGARIDLDETAAWLGTSRTPVREACLALQFEGLVRVAPRSGVTVIGLRRRDVEDNF
CCCCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCEEEEEECCCCCCCE
ALIAMLSGAAAAWAAERISEAHLAELRHLAADVRSAVETGGDLRTANFLFHRAVNQASDS
EEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
VRLIALIRQTGRIIPWSFFDLVPEQVGCALREHDDIVDAIAAHNGARARRVSEEHVVSAG
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHH
RLLVARVFGPGPAGAGSTAAGPAAGAGAGG
HEEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA