| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is uhpA [C]
Identifier: 158315290
GI number: 158315290
Start: 4149716
End: 4152568
Strand: Reverse
Name: uhpA [C]
Synonym: Franean1_3490
Alternate gene names: 158315290
Gene position: 4152568-4149716 (Counterclockwise)
Preceding gene: 158315291
Following gene: 158315288
Centisome position: 46.23
GC content: 77.43
Gene sequence:
>2853_bases ATGACCACAGCCGCGATGACCACCGCCGAGCTCACTGCGACGGGTGCGCGCGGCACCGTCCGAACAGCGGAGCACGGCCG GATCCTGAACGTGCTCGAGGGCGCGGACGGCGGTGGCCCGGCGATCGTGGAGCTCACCGGCGATCCCGGCTACGGCAAGA CCCGGCTGCTGACGGCCGTGGCGGACGAGGCCCGCAAGCGTGGCGTCGACGTGCTGCGGGGCAGGTCGCTCGAGACCCGC CGGCACCGGCCCTTCCACCCGTTCATCGACGCCTTCAGCACCTGGCGGCCCACCGGCGCCGGGCCGCTGCCGCAGGCCAC CGCGTTCGTCCAGTCCCTGGCGACCGCCGGTGACATGCTCGCCGACACCGAGACCGGCCGCTGCCGGCTCTTCGCCGAGC TGCGGTCGCTGCTGGAGGAGACACTGGCGGCGGCGCCCGACCCGCTGCTGCTGCTGCTCGACGACGTGCACTTCGCCGAC CGGGCGTCGGTCGAGCTGCTCGAGATCCTGACGCGTTGGCCGCTGGGGCAGCCGCTGTCGGTCGTGGTGGCGCATCGCCG GCGTCAGATGTCCTCCTGGCTGCAGGTCACCCTGCAGCAGGGCGTCGAGGTGGGCGCGGTGGACCAGGTGGCGTTGCCGG CGCTCAGCCTGCGCCAGAGCGCCGAGCTTCTCGGGCTCGCGGTCACCGCGCCGGGGCTGGCCGACCTGCACGAGCGCAGT GCCGGCAATCCGCTCTACCTGACGGCGTTGGCCGAGCGGGAGCGCGGCCTGAACGGAGTGGACCGGACCGGCCCGGACCC GACCGGCGCGGGTGGCCACGACCCGGCCGGCGAGCCGCCCGACCTGTGGACGCGCAGCGCGCTCGGCGCCCGGCTGCTGG CCGAGACCGTGCATCTCGATGCCCGCCAGCGGCTGGTCGCGCACGCGGCGGCCGTGCTCGGCGACACCTTCTCGGTCGAC GCCGTGGCGGCCGTCGCGCAGCTCGACCGGGAGGAGGCCTGCCAGGCGCTCGGCCAGCTGCGCGGCCGCGACCTGGTGCG CATGGTGCCGGGCGGCGAGCTGGTCTTCCGCCACCCGCTGCTGGGCAGCTGTGTCTACGGGGAGACCGACTCCTGCTGGC GGGCCGGGGCGCACCGACGCGCCCTCGAGCACCTCCGGTCGACGTTCGCCGCGCCGGCCGTGCTCGCCCGGCATGTCGAG CGCTCCGGATCGCACAGCCATGCCCTGGACCTGACGGTGCTGCTCGACGCGACCCGGGCGGCCGTGCAGAGCGAGCAGGG CACCGAGGCCGCCCACTGGCTCAGCGCCGCCCTGCGGCTGCGCCGCGCCGCCCCGGAAACCCCGAACGGCACCGGCAGCA CCGGTGAGACGGCCGGTGCGGCCGGTGCGGGGCTCCCGCCGGTCGGCCCGGAGGTCTGGCGCCCGGTGATCGACCTGCTC GCCCGCCCCGACGCCGTCGCGCGCCTGCGCGCCCTCGGCCAGGAGGTCCTGAACACCCCGGCCGCGTACGGGCCGGCCGG CCGGGTGGGCACGGCGGCGCACCTGGCGATGGTCTCGGCCTCGCTGGGCTGCCACGACCACGCCGTCGCCCTGCTGTCGA TCGCGCTCGCCGACGCCCGGGGGCCGGCCGAGGAGGGGCGCGTGCAGCTGTTCGCCCAGCTCGCCCGCATCGTCTCCGGA GGCATACCGAGCCGCGCCGAGGTGGACGCGCTGACCGGGCCGGAGCCGGCCGGCGACCCGCTGACCCGGGCCGGCGGGCT CGCGGTCCGGGCGCTGTGCGCCGCGCTCACCACCGACCGCGGCGCCACCGGGAACAGGTCCGCGGGCGCGGAGGCGGACG CGGCGGCCGCCGCGCTCGACGCCCTGGCGGTGAACGGCCCGGACCCCTCGGGCCCGGAGCTGTACTTCCTGCAGTGCCTG GGCTGGACGGAGGCGATGCTCGGTCGCTACGACAGCGCGCACGCCAGGATCACCCGCGCGGTGCGCGGCGCCCGCAAGCA CGGCGAGCGCCACCTGCTGCCCGCCCTGCTCAACAGCCTCGCCTACATCCACTACCAGTCGGGGCGCCGGAGCGAGGCGA TCGAGGTCACCCGGGAGGCCCAGCGCGTGTCGCAGCGGGCCGGTCGCGCCGACCAGGTGGCACTGGCCCAGGCCGTGGCC ACGGCCGCCTGGGCCGGGCTGGGGCGCTCCCCCACGTTCGGCCCGGAGCTGCCGGAGGGCGTGCACGCCGACGCGCCCCG CACGCCGCTGACCGCGCTGCTGTTCGCCGAGGCCGCGCTGGCCGCCGGCGACGGACCGGCCGCCCTGGCCCTGCTGGGGT CGAAGCGGGAGACCTGGCGGGTCGCCGAGCCGATCCCGGTGCTGGGTGCCCGCATCTTCGAGGTGCTGGCCGCCGCCGCG CTGCTGGCCGGGGAGGATCCACGCCCGTGGGCGGCCCGAGCGGCCGAGGAGGCCGCCCGGGTCGGGCTGCCCGAGCAGCG GGGCCACGCGCTGCTCGCCCGCGGCTACGCGCTGGGTCGCGGCCCGGAGGCCGACCGGTGCTACGCCGAGGCGGCCGGCC TGCTGGCGGGCGCGCCCGCCGGCGGCCGGGCCCGGACGTTCGCGCGGTCGGCTCAGCAACGGCGCCACCGCCCCGGCCCC GACCCGCTGGTCGAGCTCACCACCAGGGAGCAGGAGGTCGCCCAGCTCGCCGGCCAGGGGCTGCGGACCCGGGACATCGC CAGCCGGCTGCGGGTGAGCCCGCGCACCGTCGACACCCACCTCTCCCACATCTACGACAAGCTCGGCATGAGCTCGCGGG TCGAGCTGGCCCGGTTGCTGTCCCCGGTCCCGCTGGTGCCCCCGGGCCACTGA
Upstream 100 bases:
>100_bases GCGATCACCACGGGCATGCATGATTCGTGCCCCGGCCACCACAGCGCCGTCGTCCGTCGAAGAATGTCCGGAACCGCGTC GAGAAGGAGAGTCACAGGGC
Downstream 100 bases:
>100_bases TGTCGCCGACCGACTGATGCCGCCGATCCGCTGACCGGCGCGCGGCGCGCAACGGCGCGCGCCGCGCGTGACACCGTGTG ACACCACGGGACGGCTCGGC
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 950; Mature: 949
Protein sequence:
>950_residues MTTAAMTTAELTATGARGTVRTAEHGRILNVLEGADGGGPAIVELTGDPGYGKTRLLTAVADEARKRGVDVLRGRSLETR RHRPFHPFIDAFSTWRPTGAGPLPQATAFVQSLATAGDMLADTETGRCRLFAELRSLLEETLAAAPDPLLLLLDDVHFAD RASVELLEILTRWPLGQPLSVVVAHRRRQMSSWLQVTLQQGVEVGAVDQVALPALSLRQSAELLGLAVTAPGLADLHERS AGNPLYLTALAERERGLNGVDRTGPDPTGAGGHDPAGEPPDLWTRSALGARLLAETVHLDARQRLVAHAAAVLGDTFSVD AVAAVAQLDREEACQALGQLRGRDLVRMVPGGELVFRHPLLGSCVYGETDSCWRAGAHRRALEHLRSTFAAPAVLARHVE RSGSHSHALDLTVLLDATRAAVQSEQGTEAAHWLSAALRLRRAAPETPNGTGSTGETAGAAGAGLPPVGPEVWRPVIDLL ARPDAVARLRALGQEVLNTPAAYGPAGRVGTAAHLAMVSASLGCHDHAVALLSIALADARGPAEEGRVQLFAQLARIVSG GIPSRAEVDALTGPEPAGDPLTRAGGLAVRALCAALTTDRGATGNRSAGAEADAAAAALDALAVNGPDPSGPELYFLQCL GWTEAMLGRYDSAHARITRAVRGARKHGERHLLPALLNSLAYIHYQSGRRSEAIEVTREAQRVSQRAGRADQVALAQAVA TAAWAGLGRSPTFGPELPEGVHADAPRTPLTALLFAEAALAAGDGPAALALLGSKRETWRVAEPIPVLGARIFEVLAAAA LLAGEDPRPWAARAAEEAARVGLPEQRGHALLARGYALGRGPEADRCYAEAAGLLAGAPAGGRARTFARSAQQRRHRPGP DPLVELTTREQEVAQLAGQGLRTRDIASRLRVSPRTVDTHLSHIYDKLGMSSRVELARLLSPVPLVPPGH
Sequences:
>Translated_950_residues MTTAAMTTAELTATGARGTVRTAEHGRILNVLEGADGGGPAIVELTGDPGYGKTRLLTAVADEARKRGVDVLRGRSLETR RHRPFHPFIDAFSTWRPTGAGPLPQATAFVQSLATAGDMLADTETGRCRLFAELRSLLEETLAAAPDPLLLLLDDVHFAD RASVELLEILTRWPLGQPLSVVVAHRRRQMSSWLQVTLQQGVEVGAVDQVALPALSLRQSAELLGLAVTAPGLADLHERS AGNPLYLTALAERERGLNGVDRTGPDPTGAGGHDPAGEPPDLWTRSALGARLLAETVHLDARQRLVAHAAAVLGDTFSVD AVAAVAQLDREEACQALGQLRGRDLVRMVPGGELVFRHPLLGSCVYGETDSCWRAGAHRRALEHLRSTFAAPAVLARHVE RSGSHSHALDLTVLLDATRAAVQSEQGTEAAHWLSAALRLRRAAPETPNGTGSTGETAGAAGAGLPPVGPEVWRPVIDLL ARPDAVARLRALGQEVLNTPAAYGPAGRVGTAAHLAMVSASLGCHDHAVALLSIALADARGPAEEGRVQLFAQLARIVSG GIPSRAEVDALTGPEPAGDPLTRAGGLAVRALCAALTTDRGATGNRSAGAEADAAAAALDALAVNGPDPSGPELYFLQCL GWTEAMLGRYDSAHARITRAVRGARKHGERHLLPALLNSLAYIHYQSGRRSEAIEVTREAQRVSQRAGRADQVALAQAVA TAAWAGLGRSPTFGPELPEGVHADAPRTPLTALLFAEAALAAGDGPAALALLGSKRETWRVAEPIPVLGARIFEVLAAAA LLAGEDPRPWAARAAEEAARVGLPEQRGHALLARGYALGRGPEADRCYAEAAGLLAGAPAGGRARTFARSAQQRRHRPGP DPLVELTTREQEVAQLAGQGLRTRDIASRLRVSPRTVDTHLSHIYDKLGMSSRVELARLLSPVPLVPPGH >Mature_949_residues TTAAMTTAELTATGARGTVRTAEHGRILNVLEGADGGGPAIVELTGDPGYGKTRLLTAVADEARKRGVDVLRGRSLETRR HRPFHPFIDAFSTWRPTGAGPLPQATAFVQSLATAGDMLADTETGRCRLFAELRSLLEETLAAAPDPLLLLLDDVHFADR ASVELLEILTRWPLGQPLSVVVAHRRRQMSSWLQVTLQQGVEVGAVDQVALPALSLRQSAELLGLAVTAPGLADLHERSA GNPLYLTALAERERGLNGVDRTGPDPTGAGGHDPAGEPPDLWTRSALGARLLAETVHLDARQRLVAHAAAVLGDTFSVDA VAAVAQLDREEACQALGQLRGRDLVRMVPGGELVFRHPLLGSCVYGETDSCWRAGAHRRALEHLRSTFAAPAVLARHVER SGSHSHALDLTVLLDATRAAVQSEQGTEAAHWLSAALRLRRAAPETPNGTGSTGETAGAAGAGLPPVGPEVWRPVIDLLA RPDAVARLRALGQEVLNTPAAYGPAGRVGTAAHLAMVSASLGCHDHAVALLSIALADARGPAEEGRVQLFAQLARIVSGG IPSRAEVDALTGPEPAGDPLTRAGGLAVRALCAALTTDRGATGNRSAGAEADAAAAALDALAVNGPDPSGPELYFLQCLG WTEAMLGRYDSAHARITRAVRGARKHGERHLLPALLNSLAYIHYQSGRRSEAIEVTREAQRVSQRAGRADQVALAQAVAT AAWAGLGRSPTFGPELPEGVHADAPRTPLTALLFAEAALAAGDGPAALALLGSKRETWRVAEPIPVLGARIFEVLAAAAL LAGEDPRPWAARAAEEAARVGLPEQRGHALLARGYALGRGPEADRCYAEAAGLLAGAPAGGRARTFARSAQQRRHRPGPD PLVELTTREQEVAQLAGQGLRTRDIASRLRVSPRTVDTHLSHIYDKLGMSSRVELARLLSPVPLVPPGH
Specific function: Appears To Be The Positive Activator Of Uhpt Transcription. [C]
COG id: COG2771
COG function: function code K; DNA-binding HTH domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 99707; Mature: 99576
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAAMTTAELTATGARGTVRTAEHGRILNVLEGADGGGPAIVELTGDPGYGKTRLLTAV CCCCHHHHHHHEECCCCCCEEECCCCCEEEHHCCCCCCCCEEEEECCCCCCCHHHHHHHH ADEARKRGVDVLRGRSLETRRHRPFHPFIDAFSTWRPTGAGPLPQATAFVQSLATAGDML HHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH ADTETGRCRLFAELRSLLEETLAAAPDPLLLLLDDVHFADRASVELLEILTRWPLGQPLS HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHH VVVAHRRRQMSSWLQVTLQQGVEVGAVDQVALPALSLRQSAELLGLAVTAPGLADLHERS HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHC AGNPLYLTALAERERGLNGVDRTGPDPTGAGGHDPAGEPPDLWTRSALGARLLAETVHLD CCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARQRLVAHAAAVLGDTFSVDAVAAVAQLDREEACQALGQLRGRDLVRMVPGGELVFRHPL HHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCC LGSCVYGETDSCWRAGAHRRALEHLRSTFAAPAVLARHVERSGSHSHALDLTVLLDATRA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHH AVQSEQGTEAAHWLSAALRLRRAAPETPNGTGSTGETAGAAGAGLPPVGPEVWRPVIDLL HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ARPDAVARLRALGQEVLNTPAAYGPAGRVGTAAHLAMVSASLGCHDHAVALLSIALADAR CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC GPAEEGRVQLFAQLARIVSGGIPSRAEVDALTGPEPAGDPLTRAGGLAVRALCAALTTDR CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC GATGNRSAGAEADAAAAALDALAVNGPDPSGPELYFLQCLGWTEAMLGRYDSAHARITRA CCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHH VRGARKHGERHLLPALLNSLAYIHYQSGRRSEAIEVTREAQRVSQRAGRADQVALAQAVA HHHHHHCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH TAAWAGLGRSPTFGPELPEGVHADAPRTPLTALLFAEAALAAGDGPAALALLGSKRETWR HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC VAEPIPVLGARIFEVLAAAALLAGEDPRPWAARAAEEAARVGLPEQRGHALLARGYALGR CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHCCEEHHHCCCCCC GPEADRCYAEAAGLLAGAPAGGRARTFARSAQQRRHRPGPDPLVELTTREQEVAQLAGQG CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCC LRTRDIASRLRVSPRTVDTHLSHIYDKLGMSSRVELARLLSPVPLVPPGH CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TTAAMTTAELTATGARGTVRTAEHGRILNVLEGADGGGPAIVELTGDPGYGKTRLLTAV CCCHHHHHHHEECCCCCCEEECCCCCEEEHHCCCCCCCCEEEEECCCCCCCHHHHHHHH ADEARKRGVDVLRGRSLETRRHRPFHPFIDAFSTWRPTGAGPLPQATAFVQSLATAGDML HHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH ADTETGRCRLFAELRSLLEETLAAAPDPLLLLLDDVHFADRASVELLEILTRWPLGQPLS HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHH VVVAHRRRQMSSWLQVTLQQGVEVGAVDQVALPALSLRQSAELLGLAVTAPGLADLHERS HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHC AGNPLYLTALAERERGLNGVDRTGPDPTGAGGHDPAGEPPDLWTRSALGARLLAETVHLD CCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARQRLVAHAAAVLGDTFSVDAVAAVAQLDREEACQALGQLRGRDLVRMVPGGELVFRHPL HHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCC LGSCVYGETDSCWRAGAHRRALEHLRSTFAAPAVLARHVERSGSHSHALDLTVLLDATRA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHH AVQSEQGTEAAHWLSAALRLRRAAPETPNGTGSTGETAGAAGAGLPPVGPEVWRPVIDLL HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ARPDAVARLRALGQEVLNTPAAYGPAGRVGTAAHLAMVSASLGCHDHAVALLSIALADAR CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC GPAEEGRVQLFAQLARIVSGGIPSRAEVDALTGPEPAGDPLTRAGGLAVRALCAALTTDR CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC GATGNRSAGAEADAAAAALDALAVNGPDPSGPELYFLQCLGWTEAMLGRYDSAHARITRA CCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHH VRGARKHGERHLLPALLNSLAYIHYQSGRRSEAIEVTREAQRVSQRAGRADQVALAQAVA HHHHHHCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH TAAWAGLGRSPTFGPELPEGVHADAPRTPLTALLFAEAALAAGDGPAALALLGSKRETWR HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC VAEPIPVLGARIFEVLAAAALLAGEDPRPWAARAAEEAARVGLPEQRGHALLARGYALGR CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHCCEEHHHCCCCCC GPEADRCYAEAAGLLAGAPAGGRARTFARSAQQRRHRPGPDPLVELTTREQEVAQLAGQG CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCC LRTRDIASRLRVSPRTVDTHLSHIYDKLGMSSRVELARLLSPVPLVPPGH CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]