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The map label for this gene is yliC [C]

Identifier: 158315263

GI number: 158315263

Start: 4092968

End: 4093942

Strand: Reverse

Name: yliC [C]

Synonym: Franean1_3463

Alternate gene names: 158315263

Gene position: 4093942-4092968 (Counterclockwise)

Preceding gene: 158315264

Following gene: 158315262

Centisome position: 45.58

GC content: 72.62

Gene sequence:

>975_bases
GTGAGCGAGCACCGCGGCGGCACGGCCGTCCGGCTGGTCGTGCCGAGACTGCTGCGGGCCGCCGCGGTGCTGCTCCTGGT
CGGCCTGGGGGTCTCGCTGCTGCTCGAGCTGACCCCCGGCGACCCCGCCTTCGCCCTGCTGGGCGATCAGGCCAGCGCCG
ACCAGATCTCCGCCGTCCACCGGGCACTGCACCTCGACGACCCGTTCGCCACCCGCTACTGGCACTGGATGAGCGGGGTG
GTGCGCGGCGACTTCGGCACCTCGTACCTGACCGGCGAGCCCGTCCTCACCTCGGTGGGGCAGCGGATGCAGGTGACCGG
CGAGCTGGTGCTGCTCGCCCTCGCCGTGGCACTGGTCATCTCGGTGCCGGTCGGGGTGCTCACCGCGCACCGGGCGGACG
GCTGGGCGGACCGTTCCTGGTCGATGGTCTCCTCCGCGCTGATCTCGACCCCGCCGTTCGTGCTGGCGCTGTTCCTGGTC
TATCTCCTCGCGCTGCAGGTCGGCGGGCTGCCCGCCACCGGCTGGGTGGCGCCCGCGGACGGCCTGGGCGAGAACCTGCG
GCACGCCGTCCTGCCGGTGACCACGCTGGCCCTCGCCCTGGTGCCCACCTACTCGCGGATGCTGCGCGCGGACATGATCG
CCACCCTCCAGGAGGACTTCATCCTCACCGCCCGCTCCCGGGGGCTGCCCGTCCGCCGCATCCTGTTCCGGCACGCGCTG
CGGCCCTCGTCGTTCTCCCTGGTCACCCTGACCGGGCTCAGCGTCGGGCAGCTGATCAGCGGGGCGGTGGTCGTGGAGGT
CCTCTTCGCGCTGCCCGGGATCGGCCAGCTCGTCGTCACCAGCGTCGTCGCGAAGGACGTGCCGGTGGTCCAGGGCGTCG
TGATGTTCATGGCGGTCGTGTACTGCGTGGCCACCGTCGTCACCGATGTCCTCTACGGCTACCTCGACCCCAGGGTCCGG
GTGCGGCCCGCATGA

Upstream 100 bases:

>100_bases
CAGTACCTACACGCGTCCACGGCCTTCGGTACGGGCAAGCTCCCGATCATCAACGACGGCGTGCTCGACATCACCCGGCT
CACCGGGGCGGGGTGATCCA

Downstream 100 bases:

>100_bases
CCGTAACCAGCACGAACGTCACCAGCACGACCACGACCGACGCCGGCCCGGACACCTTCGGACCGGCCGGCTCCGGCGGG
GGCGTCTCCCTCGTTCTCGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSEHRGGTAVRLVVPRLLRAAAVLLLVGLGVSLLLELTPGDPAFALLGDQASADQISAVHRALHLDDPFATRYWHWMSGV
VRGDFGTSYLTGEPVLTSVGQRMQVTGELVLLALAVALVISVPVGVLTAHRADGWADRSWSMVSSALISTPPFVLALFLV
YLLALQVGGLPATGWVAPADGLGENLRHAVLPVTTLALALVPTYSRMLRADMIATLQEDFILTARSRGLPVRRILFRHAL
RPSSFSLVTLTGLSVGQLISGAVVVEVLFALPGIGQLVVTSVVAKDVPVVQGVVMFMAVVYCVATVVTDVLYGYLDPRVR
VRPA

Sequences:

>Translated_324_residues
MSEHRGGTAVRLVVPRLLRAAAVLLLVGLGVSLLLELTPGDPAFALLGDQASADQISAVHRALHLDDPFATRYWHWMSGV
VRGDFGTSYLTGEPVLTSVGQRMQVTGELVLLALAVALVISVPVGVLTAHRADGWADRSWSMVSSALISTPPFVLALFLV
YLLALQVGGLPATGWVAPADGLGENLRHAVLPVTTLALALVPTYSRMLRADMIATLQEDFILTARSRGLPVRRILFRHAL
RPSSFSLVTLTGLSVGQLISGAVVVEVLFALPGIGQLVVTSVVAKDVPVVQGVVMFMAVVYCVATVVTDVLYGYLDPRVR
VRPA
>Mature_323_residues
SEHRGGTAVRLVVPRLLRAAAVLLLVGLGVSLLLELTPGDPAFALLGDQASADQISAVHRALHLDDPFATRYWHWMSGVV
RGDFGTSYLTGEPVLTSVGQRMQVTGELVLLALAVALVISVPVGVLTAHRADGWADRSWSMVSSALISTPPFVLALFLVY
LLALQVGGLPATGWVAPADGLGENLRHAVLPVTTLALALVPTYSRMLRADMIATLQEDFILTARSRGLPVRRILFRHALR
PSSFSLVTLTGLSVGQLISGAVVVEVLFALPGIGQLVVTSVVAKDVPVVQGVVMFMAVVYCVATVVTDVLYGYLDPRVRV
RPA

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=32.258064516129, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787497, Length=313, Percent_Identity=29.3929712460064, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=30.8917197452229, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1789965, Length=332, Percent_Identity=30.7228915662651, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1787761, Length=305, Percent_Identity=36.0655737704918, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=26.0377358490566, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788504, Length=287, Percent_Identity=25.7839721254355, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34467; Mature: 34336

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHRGGTAVRLVVPRLLRAAAVLLLVGLGVSLLLELTPGDPAFALLGDQASADQISAVH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCCHHHHHHHH
RALHLDDPFATRYWHWMSGVVRGDFGTSYLTGEPVLTSVGQRMQVTGELVLLALAVALVI
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
SVPVGVLTAHRADGWADRSWSMVSSALISTPPFVLALFLVYLLALQVGGLPATGWVAPAD
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GLGENLRHAVLPVTTLALALVPTYSRMLRADMIATLQEDFILTARSRGLPVRRILFRHAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHC
RPSSFSLVTLTGLSVGQLISGAVVVEVLFALPGIGQLVVTSVVAKDVPVVQGVVMFMAVV
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
YCVATVVTDVLYGYLDPRVRVRPA
HHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
SEHRGGTAVRLVVPRLLRAAAVLLLVGLGVSLLLELTPGDPAFALLGDQASADQISAVH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCCHHHHHHHH
RALHLDDPFATRYWHWMSGVVRGDFGTSYLTGEPVLTSVGQRMQVTGELVLLALAVALVI
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
SVPVGVLTAHRADGWADRSWSMVSSALISTPPFVLALFLVYLLALQVGGLPATGWVAPAD
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GLGENLRHAVLPVTTLALALVPTYSRMLRADMIATLQEDFILTARSRGLPVRRILFRHAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHC
RPSSFSLVTLTGLSVGQLISGAVVVEVLFALPGIGQLVVTSVVAKDVPVVQGVVMFMAVV
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
YCVATVVTDVLYGYLDPRVRVRPA
HHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]