| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gsiB [H]
Identifier: 158315264
GI number: 158315264
Start: 4093947
End: 4095536
Strand: Reverse
Name: gsiB [H]
Synonym: Franean1_3464
Alternate gene names: 158315264
Gene position: 4095536-4093947 (Counterclockwise)
Preceding gene: 158315265
Following gene: 158315263
Centisome position: 45.6
GC content: 71.95
Gene sequence:
>1590_bases ATGAGACGCGGACGCCCGCCAAGACCCCTCCGATCATTCTGGTCCGCCCGGCGGTTGCGGACCGCGGCGGCGGCCGCGCT GGCCGCGCTGGCGGTCAGCACGGTCGCCGCCTGCGGCGGTTCCACCGCCGCCGACGGGACCGCGCCGGCGGCGCAGGGCG GGACCCTCACCGTCCTGTGGCCCGCCGAACCACTCGACCTGTCCACCGACAGCGGCTTCGGACTACAGATGATCTCCGGA TCGATCGAGCGCCTCGCCGTGTACGACGCCCTGGTCGCGATCACCCCGGCCGCCGAGCTGGACTACCGCCTGGCCACCTC CCTCGACTCCGACGACTCGCTGACCTGGACGCTGCGGCTGCGCGAGGGGCTGCGGTTCAGCGACGGCACCCCGCTGGACG CCGCCGCGGTCCGGGACAACTGGACCCTGCTGGCCGATCCGGCCCGCAAGTCACCCAGCGCCAAGATCGCACAGCGGATC GGGTCATTCACCATCGTGGACCCGACAACCCTGCGGATCACGCTGAAGGAGGCCGACGGCCAGTTCCCCCGGCTGGTCGC GCAGACCCCGCTGACCTTCATCGGCTCCCCCACCGCGCTGCGCGCCAAGGGCGACGGGTTCAAGACCGCGCCGGTCGGCG CCGGGGCCTTCACCGTCCGGGAGTGGCTGCGCAACGACCACCTGACTCTGGTCCGCAACCCGACCTCGTCGGTCCAGGCG CACTACGACACGATCGTCGTCAAGTCCGTCCCGGACGAGACGCAGCGCTACAACACCCTGCTCGCGGGGGGCGCGGACAT CGCCTTCTCCGCGAACCTGCGCACCGGCATCACCGCGGTCGCGGCCGGGCTGGTCACCGAGAAGGCGTTCAGCGACGGCG GGCTCAACCTGCTGTTCAACATCACCAAGGCCCCCTTCGACGACATCCGGGCCCGCCGGGCGGTCTCCTACGCCCTCGAC GCGCAGGCGCTGAACAAGGCCCTGTTCGACGGGACCGCCGCCGTGCCGTCCAGCTTCCTGCGCGACGACTCGCCGCTGCA CAGCGACGTGCCGCTGCCCCGCCCGGACCGGGCGAAGGCCCAGGCCCTGTTCGACGAGCTCGCCGCCGCGGGCAAGCCGG TGCAGTTCACCATCATCTCGCCGCTGAACTTCAGCAACGTCGCCGAATGGGTGCAGTCCAGCCTCGGTGGCTTCCGGAAC GTCAGCGTGAAGGTCGACGCGATGGCCCAGACGCTGCCCGTGCTCCAGGGCGGCTTCCAGGCCACGCTCACCGGCACCCC GCGGTTCGTGGACCCCTACCCGCAGCTGGCCCTGAACCTGGGCACCGGCGGCCCGAGCAACTACGGCAAGTTCTCCGACC CGGCCCTCGACGCCGCGCTGCGGGAGGGGCAGCAGTCCCGGGACACGGCCGTCCGGGTCCGGGCCTACGAGACCGCGCAG CGGATCATCGCCGAACAGCTGCCGCTGGCCGGCCCGCTGTACCGCCTGCCGGGCCAGTACCTACACGCGTCCACGGCCTT CGGTACGGGCAAGCTCCCGATCATCAACGACGGCGTGCTCGACATCACCCGGCTCACCGGGGCGGGGTGA
Upstream 100 bases:
>100_bases ACTGAGCCCCGGCCCGCCGAGCCCCGGCCCGCCGGGGCACCCGCCCCACCCACCCGGCAGATCACCCACGATCACCTTGA GCACCCGGAGCAGTTGAGCC
Downstream 100 bases:
>100_bases TCCAGTGAGCGAGCACCGCGGCGGCACGGCCGTCCGGCTGGTCGTGCCGAGACTGCTGCGGGCCGCCGCGGTGCTGCTCC TGGTCGGCCTGGGGGTCTCG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MRRGRPPRPLRSFWSARRLRTAAAAALAALAVSTVAACGGSTAADGTAPAAQGGTLTVLWPAEPLDLSTDSGFGLQMISG SIERLAVYDALVAITPAAELDYRLATSLDSDDSLTWTLRLREGLRFSDGTPLDAAAVRDNWTLLADPARKSPSAKIAQRI GSFTIVDPTTLRITLKEADGQFPRLVAQTPLTFIGSPTALRAKGDGFKTAPVGAGAFTVREWLRNDHLTLVRNPTSSVQA HYDTIVVKSVPDETQRYNTLLAGGADIAFSANLRTGITAVAAGLVTEKAFSDGGLNLLFNITKAPFDDIRARRAVSYALD AQALNKALFDGTAAVPSSFLRDDSPLHSDVPLPRPDRAKAQALFDELAAAGKPVQFTIISPLNFSNVAEWVQSSLGGFRN VSVKVDAMAQTLPVLQGGFQATLTGTPRFVDPYPQLALNLGTGGPSNYGKFSDPALDAALREGQQSRDTAVRVRAYETAQ RIIAEQLPLAGPLYRLPGQYLHASTAFGTGKLPIINDGVLDITRLTGAG
Sequences:
>Translated_529_residues MRRGRPPRPLRSFWSARRLRTAAAAALAALAVSTVAACGGSTAADGTAPAAQGGTLTVLWPAEPLDLSTDSGFGLQMISG SIERLAVYDALVAITPAAELDYRLATSLDSDDSLTWTLRLREGLRFSDGTPLDAAAVRDNWTLLADPARKSPSAKIAQRI GSFTIVDPTTLRITLKEADGQFPRLVAQTPLTFIGSPTALRAKGDGFKTAPVGAGAFTVREWLRNDHLTLVRNPTSSVQA HYDTIVVKSVPDETQRYNTLLAGGADIAFSANLRTGITAVAAGLVTEKAFSDGGLNLLFNITKAPFDDIRARRAVSYALD AQALNKALFDGTAAVPSSFLRDDSPLHSDVPLPRPDRAKAQALFDELAAAGKPVQFTIISPLNFSNVAEWVQSSLGGFRN VSVKVDAMAQTLPVLQGGFQATLTGTPRFVDPYPQLALNLGTGGPSNYGKFSDPALDAALREGQQSRDTAVRVRAYETAQ RIIAEQLPLAGPLYRLPGQYLHASTAFGTGKLPIINDGVLDITRLTGAG >Mature_529_residues MRRGRPPRPLRSFWSARRLRTAAAAALAALAVSTVAACGGSTAADGTAPAAQGGTLTVLWPAEPLDLSTDSGFGLQMISG SIERLAVYDALVAITPAAELDYRLATSLDSDDSLTWTLRLREGLRFSDGTPLDAAAVRDNWTLLADPARKSPSAKIAQRI GSFTIVDPTTLRITLKEADGQFPRLVAQTPLTFIGSPTALRAKGDGFKTAPVGAGAFTVREWLRNDHLTLVRNPTSSVQA HYDTIVVKSVPDETQRYNTLLAGGADIAFSANLRTGITAVAAGLVTEKAFSDGGLNLLFNITKAPFDDIRARRAVSYALD AQALNKALFDGTAAVPSSFLRDDSPLHSDVPLPRPDRAKAQALFDELAAAGKPVQFTIISPLNFSNVAEWVQSSLGGFRN VSVKVDAMAQTLPVLQGGFQATLTGTPRFVDPYPQLALNLGTGGPSNYGKFSDPALDAALREGQQSRDTAVRVRAYETAQ RIIAEQLPLAGPLYRLPGQYLHASTAFGTGKLPIINDGVLDITRLTGAG
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=500, Percent_Identity=27.6, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI87081878, Length=522, Percent_Identity=25.6704980842912, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1787762, Length=400, Percent_Identity=24.5, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1789887, Length=329, Percent_Identity=26.4437689969605, Blast_Score=79, Evalue=8e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 56092; Mature: 56092
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRGRPPRPLRSFWSARRLRTAAAAALAALAVSTVAACGGSTAADGTAPAAQGGTLTVLW CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE PAEPLDLSTDSGFGLQMISGSIERLAVYDALVAITPAAELDYRLATSLDSDDSLTWTLRL CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHCCCHHHCCCCCCCCEEEEEEE REGLRFSDGTPLDAAAVRDNWTLLADPARKSPSAKIAQRIGSFTIVDPTTLRITLKEADG CCCCCCCCCCCCCHHEECCCCEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEEECCCC QFPRLVAQTPLTFIGSPTALRAKGDGFKTAPVGAGAFTVREWLRNDHLTLVRNPTSSVQA CCCHHHHHCCHHCCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHE HYDTIVVKSVPDETQRYNTLLAGGADIAFSANLRTGITAVAAGLVTEKAFSDGGLNLLFN EEEEEEEECCCCHHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEE ITKAPFDDIRARRAVSYALDAQALNKALFDGTAAVPSSFLRDDSPLHSDVPLPRPDRAKA ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCCCCCCCCCCCCCCCCHHHH QALFDELAAAGKPVQFTIISPLNFSNVAEWVQSSLGGFRNVSVKVDAMAQTLPVLQGGFQ HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCE ATLTGTPRFVDPYPQLALNLGTGGPSNYGKFSDPALDAALREGQQSRDTAVRVRAYETAQ EEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHH RIIAEQLPLAGPLYRLPGQYLHASTAFGTGKLPIINDGVLDITRLTGAG HHHHHHCCCCCCHHHCCCHHEEEECCCCCCCCCEEECCCEEEEECCCCC >Mature Secondary Structure MRRGRPPRPLRSFWSARRLRTAAAAALAALAVSTVAACGGSTAADGTAPAAQGGTLTVLW CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE PAEPLDLSTDSGFGLQMISGSIERLAVYDALVAITPAAELDYRLATSLDSDDSLTWTLRL CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHCCCHHHCCCCCCCCEEEEEEE REGLRFSDGTPLDAAAVRDNWTLLADPARKSPSAKIAQRIGSFTIVDPTTLRITLKEADG CCCCCCCCCCCCCHHEECCCCEEEECCCCCCCHHHHHHHHCCEEEECCCEEEEEEECCCC QFPRLVAQTPLTFIGSPTALRAKGDGFKTAPVGAGAFTVREWLRNDHLTLVRNPTSSVQA CCCHHHHHCCHHCCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHE HYDTIVVKSVPDETQRYNTLLAGGADIAFSANLRTGITAVAAGLVTEKAFSDGGLNLLFN EEEEEEEECCCCHHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEE ITKAPFDDIRARRAVSYALDAQALNKALFDGTAAVPSSFLRDDSPLHSDVPLPRPDRAKA ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCCCCCCCCCCCCCCCCHHHH QALFDELAAAGKPVQFTIISPLNFSNVAEWVQSSLGGFRNVSVKVDAMAQTLPVLQGGFQ HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCE ATLTGTPRFVDPYPQLALNLGTGGPSNYGKFSDPALDAALREGQQSRDTAVRVRAYETAQ EEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHH RIIAEQLPLAGPLYRLPGQYLHASTAFGTGKLPIINDGVLDITRLTGAG HHHHHHCCCCCCHHHCCCHHEEEECCCCCCCCCEEECCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA