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The map label for this gene is yxjL [H]

Identifier: 158315190

GI number: 158315190

Start: 4016135

End: 4016815

Strand: Reverse

Name: yxjL [H]

Synonym: Franean1_3390

Alternate gene names: 158315190

Gene position: 4016815-4016135 (Counterclockwise)

Preceding gene: 158315191

Following gene: 158315187

Centisome position: 44.72

GC content: 70.63

Gene sequence:

>681_bases
ATGACTATCCGAGTGCTCCTCGCCGACGACCAGACCCTCCTACGGGCAACCTTCCGGATTCTGATCGACTCCTGCAGCGA
CATGGAGGTCGTCGGTGAGGCCGCGGACGGGCACGAGGCCGTCGCGGCGACCCGGGAGCACCGCCCGGACGTCGTGGTCA
TGGACATCCGCATGCCCGGCACCGACGGGCTCGCCGCCACCGCCGCCATCTGCGGCGACGAGACGCTGGCGGCCACCCGT
GTCCTGATCCTCACGACCTTCGAGATCGACGAGTACGTGGCCCAGGCGCTCCGCGTCGGCGCGAGCGGCTTCCTCGGCAA
GGACGTCGGAACGGACGAGCTGCTCTCCGCCATCCGCACCGTCGCCGGCGGCGACGCGCTTCTCTCGCCGGCGGCCACCC
GTGTCCTCATCAGCCGTTTCCTCGCCACCCCGGAGCCCGCGGCCACCGCCACGGTCAATCCCGTGGCGCTCGCCGCGCTC
ACCGCTCGCGAACGCGAGGTCATGGCGCTGGTGGCCGAAGGCTACTCGAACCACGAAATCGCCGACCGGCTTGTCATCAG
CCCACTGACCGCCCGCACGCACGTCCACCGGGCCATGGCGAAGCTCAACGCCCGCGACCGGGCGCAGCTGGTCGTCATCG
CGTACCAGTCCGGCCTGCTGCAAACCGCTCGACCGGACTGA

Upstream 100 bases:

>100_bases
GTCGGCGGACATCTCGAGGCCGGTCATCATCCCGAGGTCGGCTTCCACGTCACCGCCATCCTGCCCCTGCACCCCAGAAC
TCCCACGAAAACGGAAGCCG

Downstream 100 bases:

>100_bases
GCGGGCGTTTCAGGAACGCCCGCTCAGGCGGTGAGCTCAGACGGTGAGGACGGTGGCCGCGGCCGTGCCGGGGGCGCCGT
AGACCTGGGCGAATCCGACG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTIRVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPGTDGLAATAAICGDETLAATR
VLILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSAIRTVAGGDALLSPAATRVLISRFLATPEPAATATVNPVALAAL
TAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLLQTARPD

Sequences:

>Translated_226_residues
MTIRVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPGTDGLAATAAICGDETLAATR
VLILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSAIRTVAGGDALLSPAATRVLISRFLATPEPAATATVNPVALAAL
TAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLLQTARPD
>Mature_225_residues
TIRVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPGTDGLAATAAICGDETLAATRV
LILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSAIRTVAGGDALLSPAATRVLISRFLATPEPAATATVNPVALAALT
AREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLLQTARPD

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=217, Percent_Identity=33.6405529953917, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788521, Length=217, Percent_Identity=32.258064516129, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787473, Length=212, Percent_Identity=33.0188679245283, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790102, Length=210, Percent_Identity=33.8095238095238, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=24.6376811594203, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788712, Length=218, Percent_Identity=25.6880733944954, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082052, Length=107, Percent_Identity=33.6448598130841, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23981; Mature: 23850

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPG
CEEEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCC
TDGLAATAAICGDETLAATRVLILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSAIRT
CCCHHHHHHHCCCCHHHHEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VAGGDALLSPAATRVLISRFLATPEPAATATVNPVALAALTAREREVMALVAEGYSNHEI
HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
ADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLLQTARPD
HHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TIRVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPG
EEEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCC
TDGLAATAAICGDETLAATRVLILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSAIRT
CCCHHHHHHHCCCCHHHHEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VAGGDALLSPAATRVLISRFLATPEPAATATVNPVALAALTAREREVMALVAEGYSNHEI
HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
ADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLLQTARPD
HHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]