| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315027
Identifier: 158315027
GI number: 158315027
Start: 3802106
End: 3803347
Strand: Direct
Name: 158315027
Synonym: Franean1_3221
Alternate gene names: NA
Gene position: 3802106-3803347 (Clockwise)
Preceding gene: 158315025
Following gene: 158315028
Centisome position: 42.33
GC content: 65.14
Gene sequence:
>1242_bases GTGATCCAGAGACGATTAAGATCATTTGTCGCGATGGCGGGTGCCGTTGCGGTGCTGGTGGCGGCTGCCGGCTGCGGCGG CTCGTCGTCGGACGGGAGTGGTGGTGATGCGGAGGCGCAGGGTGGCAAGACCTACACGATCGGGGTCTTAGCCGATATCA CGGGCCCGGCGGCGTCCGGGAACGAGACCAGCGTCGAGGGCGTCAAGGCGGGGACGTACTACGCCGAGCGCGAGGGAATC AAGATCAAGTACATCGTGGCCGACACGGCGACGAATCCGACGACCGCGCTCTCGGCCGCGCAGAAGCTGGTCACGCAGGA TCACGTGTTCGCCGTGATCGCCCACTCGGCGATCACGTTCTCCGCGGCTTCCTACCTCACCGCTCAGAAGGTCCCGGTCA TCGGTTTCGCCCAGGACGGCCGAGAGTGGTTCACGTCCCCGAACATGTTCTCGATCACCGGGCCGACGATCGACAAAGAA GTCACGACGACGATGGGCGAGTTCTTCAAGTCGAAGGGGGCGACCAGCATCGCCTCGATCGGTTACTCGGTCTCGCCCCA GTCGCAGGCCTCGGCGCTCGAGACGGCGGAGTCGGCCAGACTCGCGGGTGTCAAAATAGGCTACGTCAACGCGCAGCTCC CGTTCGGTAGCACCGATGTCGGTCCGACAGTGCTGGCCATGAAGGAAGCCAAGATCGATTCCTTCTTCGCCGCGGTCGAC CCGAACACCGCCTTCGCTCTCATCTCCGGCCTGGAACAGCAGGGCGTGGACATCAAGGTGGCGCTGCTGCCCACCGGCTA TGGCGGTGACCTGGCGCAGGCTGGCCCGGGCGCGCGGCGAGCGGCTCAGGGTGTCTACTTCTCCCTCGGATACCAGCCCG TCGAGATGCAGACAGCCGCTACCAAGCAGTTCCAGAGCGACCTGAAAGAAGCGGGGATCACCGGGGCGCCGACGCTCGCG CATTACAACGGGTACATCTCGGTCGGTCTGCTCGTCCGGGCTCTCAAGGCGGCTGGCGCGGATCCGACGCCGGCATCGCT CACCAAGGCGCTCGCCGGAATCCATGACTGGGACGGCCTCGGCCTCTACGGGGCCACGAAGTACGACCTCAGCCAGAAGA AGATCTCGACCGGCGAGTGCCTGTTCATGAGCAGACTGGACGGCAGCACGTTCAAGCCCGTCCCCGACGCTATCCCCATC TGCGGCGACCTGACCGACGAGAAGGTCACGCTCTCGTCCTGA
Upstream 100 bases:
>100_bases CTGCATCGGTGGTCCCGGCCTGCGCCCCGGGGCTGCCTGGGCCGTTCCCGCGAACTGCTGACGGATCCAGCGAGCGCCAT CGAATGGACTAGGGGACACT
Downstream 100 bases:
>100_bases CGGGCGGCCAGGCCGGCCCGCCCACGCCGTGGGCGGGCCGGCCGACGTGGCGTGGAGATCACCTACCGGCCTGCTCTGCC GCGCCGGGGGTCGGCCATGG
Product: branched-chain amino acid ABC transporter periplasmic component-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MIQRRLRSFVAMAGAVAVLVAAAGCGGSSSDGSGGDAEAQGGKTYTIGVLADITGPAASGNETSVEGVKAGTYYAEREGI KIKYIVADTATNPTTALSAAQKLVTQDHVFAVIAHSAITFSAASYLTAQKVPVIGFAQDGREWFTSPNMFSITGPTIDKE VTTTMGEFFKSKGATSIASIGYSVSPQSQASALETAESARLAGVKIGYVNAQLPFGSTDVGPTVLAMKEAKIDSFFAAVD PNTAFALISGLEQQGVDIKVALLPTGYGGDLAQAGPGARRAAQGVYFSLGYQPVEMQTAATKQFQSDLKEAGITGAPTLA HYNGYISVGLLVRALKAAGADPTPASLTKALAGIHDWDGLGLYGATKYDLSQKKISTGECLFMSRLDGSTFKPVPDAIPI CGDLTDEKVTLSS
Sequences:
>Translated_413_residues MIQRRLRSFVAMAGAVAVLVAAAGCGGSSSDGSGGDAEAQGGKTYTIGVLADITGPAASGNETSVEGVKAGTYYAEREGI KIKYIVADTATNPTTALSAAQKLVTQDHVFAVIAHSAITFSAASYLTAQKVPVIGFAQDGREWFTSPNMFSITGPTIDKE VTTTMGEFFKSKGATSIASIGYSVSPQSQASALETAESARLAGVKIGYVNAQLPFGSTDVGPTVLAMKEAKIDSFFAAVD PNTAFALISGLEQQGVDIKVALLPTGYGGDLAQAGPGARRAAQGVYFSLGYQPVEMQTAATKQFQSDLKEAGITGAPTLA HYNGYISVGLLVRALKAAGADPTPASLTKALAGIHDWDGLGLYGATKYDLSQKKISTGECLFMSRLDGSTFKPVPDAIPI CGDLTDEKVTLSS >Mature_413_residues MIQRRLRSFVAMAGAVAVLVAAAGCGGSSSDGSGGDAEAQGGKTYTIGVLADITGPAASGNETSVEGVKAGTYYAEREGI KIKYIVADTATNPTTALSAAQKLVTQDHVFAVIAHSAITFSAASYLTAQKVPVIGFAQDGREWFTSPNMFSITGPTIDKE VTTTMGEFFKSKGATSIASIGYSVSPQSQASALETAESARLAGVKIGYVNAQLPFGSTDVGPTVLAMKEAKIDSFFAAVD PNTAFALISGLEQQGVDIKVALLPTGYGGDLAQAGPGARRAAQGVYFSLGYQPVEMQTAATKQFQSDLKEAGITGAPTLA HYNGYISVGLLVRALKAAGADPTPASLTKALAGIHDWDGLGLYGATKYDLSQKKISTGECLFMSRLDGSTFKPVPDAIPI CGDLTDEKVTLSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42571; Mature: 42571
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQRRLRSFVAMAGAVAVLVAAAGCGGSSSDGSGGDAEAQGGKTYTIGVLADITGPAASG CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC NETSVEGVKAGTYYAEREGIKIKYIVADTATNPTTALSAAQKLVTQDHVFAVIAHSAITF CCCCCCCEECCCEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHH SAASYLTAQKVPVIGFAQDGREWFTSPNMFSITGPTIDKEVTTTMGEFFKSKGATSIASI HHHHHHHHCCCCEEEEECCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHC GYSVSPQSQASALETAESARLAGVKIGYVNAQLPFGSTDVGPTVLAMKEAKIDSFFAAVD CCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEHHCHHHEEEEEC PNTAFALISGLEQQGVDIKVALLPTGYGGDLAQAGPGARRAAQGVYFSLGYQPVEMQTAA CCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHCCCCHHHHHCCEEEEECCCCEEHHHHH TKQFQSDLKEAGITGAPTLAHYNGYISVGLLVRALKAAGADPTPASLTKALAGIHDWDGL HHHHHHHHHHCCCCCCCHHHHCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC GLYGATKYDLSQKKISTGECLFMSRLDGSTFKPVPDAIPICGDLTDEKVTLSS CCCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MIQRRLRSFVAMAGAVAVLVAAAGCGGSSSDGSGGDAEAQGGKTYTIGVLADITGPAASG CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC NETSVEGVKAGTYYAEREGIKIKYIVADTATNPTTALSAAQKLVTQDHVFAVIAHSAITF CCCCCCCEECCCEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHH SAASYLTAQKVPVIGFAQDGREWFTSPNMFSITGPTIDKEVTTTMGEFFKSKGATSIASI HHHHHHHHCCCCEEEEECCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHC GYSVSPQSQASALETAESARLAGVKIGYVNAQLPFGSTDVGPTVLAMKEAKIDSFFAAVD CCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEHHCHHHEEEEEC PNTAFALISGLEQQGVDIKVALLPTGYGGDLAQAGPGARRAAQGVYFSLGYQPVEMQTAA CCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHCCCCHHHHHCCEEEEECCCCEEHHHHH TKQFQSDLKEAGITGAPTLAHYNGYISVGLLVRALKAAGADPTPASLTKALAGIHDWDGL HHHHHHHHHHCCCCCCCHHHHCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC GLYGATKYDLSQKKISTGECLFMSRLDGSTFKPVPDAIPICGDLTDEKVTLSS CCCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA