| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ykvO [H]
Identifier: 158315024
GI number: 158315024
Start: 3797695
End: 3798453
Strand: Direct
Name: ykvO [H]
Synonym: Franean1_3218
Alternate gene names: 158315024
Gene position: 3797695-3798453 (Clockwise)
Preceding gene: 158315022
Following gene: 158315025
Centisome position: 42.28
GC content: 68.25
Gene sequence:
>759_bases ATGGCCGGCATGCGGGACTCGGTGGCTGTCGTCACCGGAGGTACGGCGGGCATCGGCTTCGCCGTCGCTCAGGAACTCGT CGCGCGTGAGGCGAGGGTGGTCATCACCGGCCGTCGTCAGCAGCAGCTTGACGACGCGGTCGCCGCCCTGGGCGAGCGTG CCTCGGGGGTACGCGCCGACGTCGCGAGCTCGGCGGAAATGGATGCCGTGTTCGCGTACGTGAGTGAGCGGCACGGTCGC CTCGACACGGTCGTCGCGAACGCCGGCATGGGTCGTCACGCCGAACTCGGTGCGATCACCGACGAGGATTTCGACCAGAC CTTCGCCATCAACGTGAAGGGTGTGCTGCACAGCGTGCAGAAGGCGTTTCCGCTGATGCGCCCGGGCGGGACGATCACAG TGATCGCCTCGACCGCCACCATCCGTGGCTCCTTCGGCCTGAGCCTCTACGGTGGTTCCAAGGCGGCGGTTCGGAACTTC GTACGCTCCTGGATCCAGGAGACCGCGGGATCAGGGATCAGGATCAACGTCATCAGCCCCGGTGCCGTCGACACAGAGGC TCTGCGTGAGGCGCTGGCCGGCGCGGTCGGATCCGACGGGGTGGAAGCTCAGCTGGCGGCGATCGGATCCTCGAGCCCAC TGGGGCGCATCGCACAGCCCAAGGAGATCGCCGCGGCCGCGGTCTTCCTCGCCAGTGCGGAGGCGAGCTACATCCATGGC GCCGAGCTCTTCGTCGACGGCGGCACCGCCCAGGTCTGA
Upstream 100 bases:
>100_bases TCCGGCGATAGCGGACAGTTGTCCGCTGCGTCGACTCTAGCGGCGCCCGCCGCCCAGCCTGGCGCACGGCGAGCGGCGTC CTTCCTCGAGGGGATATGAC
Downstream 100 bases:
>100_bases CTACAGGGTGGCTGCCACCGCGGGAGGGCGCCCCGCGCCAGAAGCGATCTTCGGGCCGATGGTCCGTCGCCGGCCCGAGG CGTGGGTTGACCGCCGTGGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MAGMRDSVAVVTGGTAGIGFAVAQELVAREARVVITGRRQQQLDDAVAALGERASGVRADVASSAEMDAVFAYVSERHGR LDTVVANAGMGRHAELGAITDEDFDQTFAINVKGVLHSVQKAFPLMRPGGTITVIASTATIRGSFGLSLYGGSKAAVRNF VRSWIQETAGSGIRINVISPGAVDTEALREALAGAVGSDGVEAQLAAIGSSSPLGRIAQPKEIAAAAVFLASAEASYIHG AELFVDGGTAQV
Sequences:
>Translated_252_residues MAGMRDSVAVVTGGTAGIGFAVAQELVAREARVVITGRRQQQLDDAVAALGERASGVRADVASSAEMDAVFAYVSERHGR LDTVVANAGMGRHAELGAITDEDFDQTFAINVKGVLHSVQKAFPLMRPGGTITVIASTATIRGSFGLSLYGGSKAAVRNF VRSWIQETAGSGIRINVISPGAVDTEALREALAGAVGSDGVEAQLAAIGSSSPLGRIAQPKEIAAAAVFLASAEASYIHG AELFVDGGTAQV >Mature_251_residues AGMRDSVAVVTGGTAGIGFAVAQELVAREARVVITGRRQQQLDDAVAALGERASGVRADVASSAEMDAVFAYVSERHGRL DTVVANAGMGRHAELGAITDEDFDQTFAINVKGVLHSVQKAFPLMRPGGTITVIASTATIRGSFGLSLYGGSKAAVRNFV RSWIQETAGSGIRINVISPGAVDTEALREALAGAVGSDGVEAQLAAIGSSSPLGRIAQPKEIAAAAVFLASAEASYIHGA ELFVDGGTAQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=32, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=31.8367346938775, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=29.4117647058824, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=30.1960784313725, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=27.6264591439689, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=34.4961240310078, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=33.7016574585635, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=32.0855614973262, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=33.0472103004292, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI66933014, Length=225, Percent_Identity=26.2222222222222, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=27.7992277992278, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7705925, Length=260, Percent_Identity=27.3076923076923, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI209862901, Length=225, Percent_Identity=30.2222222222222, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI19923983, Length=225, Percent_Identity=30.2222222222222, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=28.7179487179487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4504505, Length=203, Percent_Identity=30.0492610837438, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.2834645669291, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=37.1428571428571, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=33.7349397590361, Blast_Score=114, Evalue=9e-27, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=32.1138211382114, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=31.2, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=29.9180327868852, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=32.2175732217573, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=30.0813008130081, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=29.3650793650794, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=30.1675977653631, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=25.7028112449799, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=28.6290322580645, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=31.6205533596838, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=32.8413284132841, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=28.5140562248996, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30.3703703703704, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=30.1115241635688, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=30.2238805970149, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=31.4606741573034, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=29.9610894941634, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=31.1355311355311, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=31.4176245210728, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=32.4626865671642, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=29.9625468164794, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.5343511450382, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=29.0836653386454, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=30, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=30.4182509505703, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=27.2030651340996, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=28.1481481481481, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.5384615384615, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=27.1653543307087, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17538182, Length=266, Percent_Identity=29.6992481203008, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=27.3076923076923, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17568967, Length=186, Percent_Identity=32.258064516129, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=25.4826254826255, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508651, Length=260, Percent_Identity=26.5384615384615, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17561272, Length=241, Percent_Identity=26.1410788381743, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.8774703557312, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=27, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=189, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=33.201581027668, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=34.765625, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=33.6032388663968, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=32.258064516129, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=30.859375, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=29.9595141700405, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=27.8008298755187, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24644337, Length=201, Percent_Identity=31.3432835820896, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI221331218, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24665243, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221331216, Length=196, Percent_Identity=29.0816326530612, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=27.7992277992278, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24665247, Length=196, Percent_Identity=29.0816326530612, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24641388, Length=209, Percent_Identity=33.9712918660287, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=29.2452830188679, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24663911, Length=229, Percent_Identity=27.9475982532751, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24648693, Length=205, Percent_Identity=32.6829268292683, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355889, Length=205, Percent_Identity=32.6829268292683, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=27.5720164609054, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25753; Mature: 25622
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGMRDSVAVVTGGTAGIGFAVAQELVAREARVVITGRRQQQLDDAVAALGERASGVRAD CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHH VASSAEMDAVFAYVSERHGRLDTVVANAGMGRHAELGAITDEDFDQTFAINVKGVLHSVQ HHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHH KAFPLMRPGGTITVIASTATIRGSFGLSLYGGSKAAVRNFVRSWIQETAGSGIRINVISP HHCCCCCCCCEEEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC GAVDTEALREALAGAVGSDGVEAQLAAIGSSSPLGRIAQPKEIAAAAVFLASAEASYIHG CCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEC AELFVDGGTAQV EEEEECCCCCCC >Mature Secondary Structure AGMRDSVAVVTGGTAGIGFAVAQELVAREARVVITGRRQQQLDDAVAALGERASGVRAD CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHH VASSAEMDAVFAYVSERHGRLDTVVANAGMGRHAELGAITDEDFDQTFAINVKGVLHSVQ HHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHH KAFPLMRPGGTITVIASTATIRGSFGLSLYGGSKAAVRNFVRSWIQETAGSGIRINVISP HHCCCCCCCCEEEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC GAVDTEALREALAGAVGSDGVEAQLAAIGSSSPLGRIAQPKEIAAAAVFLASAEASYIHG CCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEC AELFVDGGTAQV EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]