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The map label for this gene is yagI [H]

Identifier: 158314704

GI number: 158314704

Start: 3400736

End: 3401452

Strand: Direct

Name: yagI [H]

Synonym: Franean1_2885

Alternate gene names: 158314704

Gene position: 3400736-3401452 (Clockwise)

Preceding gene: 158314700

Following gene: 158314706

Centisome position: 37.86

GC content: 71.97

Gene sequence:

>717_bases
ATGTTGCAGAAGGCCATGTGGATCCTGGAGGCCTTCCGTCCGAGTGGCGGCCCGTTCCGTCTGGCGGAACTCGTTGAGCG
CTCGGGGCTGACGAAGACGACCGTGCACCGGCTCAGCGCGGAGCTGGTCGAGATCGGTCTGCTCGAACGGGTCGCCGTCG
GCTATCGGCTCGGCCCCAAGCTCTTCGAGCTCGGCGCGATCGTCCCGCCGCGCCGGGATCTGCGGGACGCCGCCCGCCCC
TTCATGCAGGACCTCTTCGAAGCCACCCGGGAGACCGTGCACCTGGCCGCGCGCGACGGCCTCGACGCCGTCTACGTGGA
GAAGATCCACGGCCGGGACCGCCGCGAGATGCCCTCACAGGTCGGCGGTGCGCTGCCGCTGACCTGCACCGGAGTCGGCA
AGGCCCTGCTGGCGTTCGGCGGTGAGGAGCTGCTGGCCGAGGTGCTCTCCCGGCCGCTGCGGGTACTCACCCCCAACTCC
CTGCGCGACCCGGAGCGGCTGCGGATCGAGATCGAGCAGGTGCAGATCGCCGGGATCGCCTACGAGCAGCAGGAGTCCAT
GCCCGGCCTGAGCTGCGTCGCTGTTCCGGTGCTGGTCGACGGCTTGGCGGTCGCGGCACTCTCGGTCTCGGTGCCCGTCG
CGCGGTTTCGTCCGTCCCGGCTGGCCCCCGCGCTGCGCGCCGCCAGCTTCGGCGTCGCCCGGGCGCTGGCCCCCTGA

Upstream 100 bases:

>100_bases
CGGTTCTCCTCACGCGTCGGTGCGGTGTCTCCGGTATAGACGTCCGTTGTGATCGTCGGCAACACTGGATTCCGTGACAC
GGAACAGCGCTGACGGTGGC

Downstream 100 bases:

>100_bases
GCGCCCTGCGCTGCCGCTGCGAGCTCGCCCGTCACCCCCTTTGCGGGGACCCGAGACCCGGAACCGGGCCAGTGCGCCAG
TGGCGATGCTGGCACCTTCG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLQKAMWILEAFRPSGGPFRLAELVERSGLTKTTVHRLSAELVEIGLLERVAVGYRLGPKLFELGAIVPPRRDLRDAARP
FMQDLFEATRETVHLAARDGLDAVYVEKIHGRDRREMPSQVGGALPLTCTGVGKALLAFGGEELLAEVLSRPLRVLTPNS
LRDPERLRIEIEQVQIAGIAYEQQESMPGLSCVAVPVLVDGLAVAALSVSVPVARFRPSRLAPALRAASFGVARALAP

Sequences:

>Translated_238_residues
MLQKAMWILEAFRPSGGPFRLAELVERSGLTKTTVHRLSAELVEIGLLERVAVGYRLGPKLFELGAIVPPRRDLRDAARP
FMQDLFEATRETVHLAARDGLDAVYVEKIHGRDRREMPSQVGGALPLTCTGVGKALLAFGGEELLAEVLSRPLRVLTPNS
LRDPERLRIEIEQVQIAGIAYEQQESMPGLSCVAVPVLVDGLAVAALSVSVPVARFRPSRLAPALRAASFGVARALAP
>Mature_238_residues
MLQKAMWILEAFRPSGGPFRLAELVERSGLTKTTVHRLSAELVEIGLLERVAVGYRLGPKLFELGAIVPPRRDLRDAARP
FMQDLFEATRETVHLAARDGLDAVYVEKIHGRDRREMPSQVGGALPLTCTGVGKALLAFGGEELLAEVLSRPLRVLTPNS
LRDPERLRIEIEQVQIAGIAYEQQESMPGLSCVAVPVLVDGLAVAALSVSVPVARFRPSRLAPALRAASFGVARALAP

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=242, Percent_Identity=33.0578512396694, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082359, Length=226, Percent_Identity=28.7610619469027, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788131, Length=205, Percent_Identity=34.1463414634146, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786715, Length=224, Percent_Identity=30.8035714285714, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1789999, Length=213, Percent_Identity=30.0469483568075, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790752, Length=179, Percent_Identity=30.1675977653631, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788581, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 25830; Mature: 25830

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQKAMWILEAFRPSGGPFRLAELVERSGLTKTTVHRLSAELVEIGLLERVAVGYRLGPK
CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LFELGAIVPPRRDLRDAARPFMQDLFEATRETVHLAARDGLDAVYVEKIHGRDRREMPSQ
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHCCHHH
VGGALPLTCTGVGKALLAFGGEELLAEVLSRPLRVLTPNSLRDPERLRIEIEQVQIAGIA
HCCCCCEEEHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCHHHEEEHHHEEEEHEE
YEQQESMPGLSCVAVPVLVDGLAVAALSVSVPVARFRPSRLAPALRAASFGVARALAP
EHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQKAMWILEAFRPSGGPFRLAELVERSGLTKTTVHRLSAELVEIGLLERVAVGYRLGPK
CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LFELGAIVPPRRDLRDAARPFMQDLFEATRETVHLAARDGLDAVYVEKIHGRDRREMPSQ
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHCCHHH
VGGALPLTCTGVGKALLAFGGEELLAEVLSRPLRVLTPNSLRDPERLRIEIEQVQIAGIA
HCCCCCEEEHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCHHHEEEHHHEEEEHEE
YEQQESMPGLSCVAVPVLVDGLAVAALSVSVPVARFRPSRLAPALRAASFGVARALAP
EHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]