| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314285
Identifier: 158314285
GI number: 158314285
Start: 2919945
End: 2922434
Strand: Direct
Name: 158314285
Synonym: Franean1_2455
Alternate gene names: NA
Gene position: 2919945-2922434 (Clockwise)
Preceding gene: 158314284
Following gene: 158314287
Centisome position: 32.51
GC content: 71.29
Gene sequence:
>2490_bases TTGTGGTCGTTCTGGCAAGCTGCGGGCATGGATGTGGGCACGGGGGCCCGGGGACCGGTCGGCGGGGAATCAGCGTCCTC GGCGGGTTCGGGCGGTGGGGTGGACTTCTTCGTCTCCTACACCGGGGCGGATGAGGCGTGGGCGACCTGGGTCGCCGAGG TGCTCGAAGCCGCGGGCCGCACGGTGGCGGTGCAGGCGTGGGATTCCCCTGCGGGGGAGAATTTCGTGACCTGGATCAGC GTGCAGATGGGCGCTGCGGCCCGGACGGTTGCGGTCTGTTCGCAGGCGTATTTCGCTTCGCATTGGTGCACCCAGGAGTG GACCGGCGCCCTGGCCGGGCGGAAACTGACCCCGTTGCGTGTCGCCGACTGTCCAGTCCCGCCGGTGCTGTCGACTATCT CCTACCGGGACCTGTTCGACGTCGACGAGCCCGTAGCGCGACGGCGTCTGCTGGAGGCGGTCGGCCTGGTCCACCCCGTG CGGGTTTCCGGTGGCTTCCCCGGCCGGCCGGCCGCCCCGCCCTCGGTGGGGGCGGTGTTCCCGGGGCGGCTGCCCGCAGT GTGGAATGTGCCCGCGCGGAACCTACTCTTCACCGGCCGTGACACGCTCCTGGACGGCCTGCGCACCCAGCTCGCCGCGG GTACTGGCCGTATCGCGATCGCGGCGTTGCGGGGCGCCGGTGGGGTGGGTAAGTCGCAGCTGGCGGTGGAGTTCGCCTGG CGGTATGCCGCGGACTACCAGCTGGTCTGGTGGGTGGACGCGGAAACCCCCGCGGGTCTGCTCGCCGGTCTTGCTGCTCT CGCGAACACTCTCGGGATCGGCTCGGGGGATCTGCCGGTCCGGGCGGAGGAGGCGCTGGCGGAGCTGGGACGTCGACAGA GCTGGCTGCTGGTCTATGACAACGTCGGCGACCCAACGACGTTGGCGCGGATGCTTCCGCCGGCCACGGGACGGCTGGTG GTGACCTGCCGCGATCCGGGGGTGGGTCGGGTCGGGGTGGAGTTGGTCGAAGTCGGCGAGTTCACCCGCGCCGAATCGTT CGCGCTTCTGCGCCGCTATCTGCCTACCCTGTCCGACACCGCCGCCGACCAGCTCGCTGACGCGCTCGGTGATCTACCGT TGGCTGTCGACCAGGCCGGGGCTTTCCTGGCCACCAGTGGTATCCCCGTGCACGACTATCTGGCCCTGCTGGCCACCCGA CCCGCTTTGCTGCTCGCTGAGGAGACGCTGCATCATCCAGGGCTGGCCGCGACCGTCACCGCTGCCCGTGAACGGCTCGG CAGCGACCATCCGGGTGCTGCTGGCCTGCTGGATCGGCTGGCGTTCCTCGCCCCCGAACCCATCCCACTCCGCCCCGCCG GCAGCGAATGGCTGGCCCTCGGGGATCCCTACACCACGCACACCGCGCTTGCTGCGATCAGCAGGCTCGCGCTCGCCCGC CGCACCGACACCACCCTCCAGCTGCACCGCCTCGTCCACGCTCTCCTGCGGGCCCGCCTCACCGTCGACCAGCGGCGCAC CGCCCTCGCTGGTGCCCTTGACCTGCTCGCCACCGTCTACCCCGGCGAGGCGGAGGACCCCTCGGCCTGGCCGACCTACG CCACGCTCACTCCCCACGTCACCGCGGTCGCAGGCCATCTCGCTGACTTTCCCGGCCTGGCCGAACCCGACGGGTTCCGG CTGCTGCTGCACCGGACCTGCTGGTACCTGCACTGCAGCGGCCAGAACCACAGTGTCCGCACCCTCAGCCACACCACCCG CACCCGCTGGATCACTACCCTCGGCGCTGACCATCCCGACAGCCAGATCATCACCACCGCCCTCGCCACCGCGCTGGCCG ACCTCGGCGAGCACCGGGCGGCGCGGGAGCTGGCCGAAGACACCCTGACCCGCCGCAGCCGGGTCCTCGGCGACGACCAC CCCCTCACCCTGCAATCGGCGAACAACCTCGCCAACCAGATGGCCGCCCTCGGCGAGCACCAAGCCGCCCGCAAGCTGGC CGAAGACACCCTGACCCGAATGCGGCGTCTCCTCGGTCACGACCACCCCGACACCCTGGCCTCGGCGAACAACCTCACCC TTCTGCTGGCCGACCTCGGCGAGCACCAGGCGGCGCGGGAGCTGGCCGAAGACACCCTGACCCGCCGCAGCCGGGTCCTC GGCGACGACCACCCCCACACCCTGCGCTCGGCGAACAACCTCGCTTTCCATCGGGCCGCGGTGGGGGAGCACCAGGTGGC GCGGGAGCTGGCCGAGGACACCCTGACCCGCTGCCGCCGGGTCCTCGGTGACGACCATCCCGACACCCTGGCCTCAGCGC ACAACCTCGCCATCGATCTCAGCGCCTTGGGAGAACACCAGGCAGCCCGGGAACTGGCCGAAGAAACCCTCACCCGCCGC CGGCGCCTCCTCGGCGACGACCACCCCCACACCCGCGACAGTGCCGGCCAGCTCGAGCTCCTCCTCGAACAGCTCGGCCC GGCCCTCTGA
Upstream 100 bases:
>100_bases GCCGTCACCTGTGTCTGAGGATGGTCGGCTTGCCGGCCCTCTGCCTGCGGCTCGGTTGTTGGCGCGGCGGGGAGGTGGGA CGCGTCTGGTTGGTGACGGC
Downstream 100 bases:
>100_bases CGCCCGCCTGATCATCGACCTAACCCACCCGACTGATCTTGTCGGAAATCCGTCCGGGCGTGGGTGTGATCTTCATCGAC AAGTGGCGGTGGTTCTTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: TIR Protein; NB-ARC Domain-Containing Protein; Tetratricopeptide Repeat Family; NB-ARC Domain Protein; Serine/Threonine Protein Kinase; WD40 Repeat Subgroup; WD-40 Repeat-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Domain-Containing Protein; Kinesin Light Chain; Sigma-70 Region 2 Domain Protein; TPR Domain Family Protein; Tetratricopeptide Repeat Family Protein; SEC-C Motif Domain Protein; Tetratricopeptide Repeat-Containing Protein; Peptidase; Ll-Interleukin Receptor; Chaperone Protein DNAK; SARP Family Transcriptional Regulator; Transmembrane Receptor Activity; Peptidase-Like
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MWSFWQAAGMDVGTGARGPVGGESASSAGSGGGVDFFVSYTGADEAWATWVAEVLEAAGRTVAVQAWDSPAGENFVTWIS VQMGAAARTVAVCSQAYFASHWCTQEWTGALAGRKLTPLRVADCPVPPVLSTISYRDLFDVDEPVARRRLLEAVGLVHPV RVSGGFPGRPAAPPSVGAVFPGRLPAVWNVPARNLLFTGRDTLLDGLRTQLAAGTGRIAIAALRGAGGVGKSQLAVEFAW RYAADYQLVWWVDAETPAGLLAGLAALANTLGIGSGDLPVRAEEALAELGRRQSWLLVYDNVGDPTTLARMLPPATGRLV VTCRDPGVGRVGVELVEVGEFTRAESFALLRRYLPTLSDTAADQLADALGDLPLAVDQAGAFLATSGIPVHDYLALLATR PALLLAEETLHHPGLAATVTAARERLGSDHPGAAGLLDRLAFLAPEPIPLRPAGSEWLALGDPYTTHTALAAISRLALAR RTDTTLQLHRLVHALLRARLTVDQRRTALAGALDLLATVYPGEAEDPSAWPTYATLTPHVTAVAGHLADFPGLAEPDGFR LLLHRTCWYLHCSGQNHSVRTLSHTTRTRWITTLGADHPDSQIITTALATALADLGEHRAARELAEDTLTRRSRVLGDDH PLTLQSANNLANQMAALGEHQAARKLAEDTLTRMRRLLGHDHPDTLASANNLTLLLADLGEHQAARELAEDTLTRRSRVL GDDHPHTLRSANNLAFHRAAVGEHQVARELAEDTLTRCRRVLGDDHPDTLASAHNLAIDLSALGEHQAARELAEETLTRR RRLLGDDHPHTRDSAGQLELLLEQLGPAL
Sequences:
>Translated_829_residues MWSFWQAAGMDVGTGARGPVGGESASSAGSGGGVDFFVSYTGADEAWATWVAEVLEAAGRTVAVQAWDSPAGENFVTWIS VQMGAAARTVAVCSQAYFASHWCTQEWTGALAGRKLTPLRVADCPVPPVLSTISYRDLFDVDEPVARRRLLEAVGLVHPV RVSGGFPGRPAAPPSVGAVFPGRLPAVWNVPARNLLFTGRDTLLDGLRTQLAAGTGRIAIAALRGAGGVGKSQLAVEFAW RYAADYQLVWWVDAETPAGLLAGLAALANTLGIGSGDLPVRAEEALAELGRRQSWLLVYDNVGDPTTLARMLPPATGRLV VTCRDPGVGRVGVELVEVGEFTRAESFALLRRYLPTLSDTAADQLADALGDLPLAVDQAGAFLATSGIPVHDYLALLATR PALLLAEETLHHPGLAATVTAARERLGSDHPGAAGLLDRLAFLAPEPIPLRPAGSEWLALGDPYTTHTALAAISRLALAR RTDTTLQLHRLVHALLRARLTVDQRRTALAGALDLLATVYPGEAEDPSAWPTYATLTPHVTAVAGHLADFPGLAEPDGFR LLLHRTCWYLHCSGQNHSVRTLSHTTRTRWITTLGADHPDSQIITTALATALADLGEHRAARELAEDTLTRRSRVLGDDH PLTLQSANNLANQMAALGEHQAARKLAEDTLTRMRRLLGHDHPDTLASANNLTLLLADLGEHQAARELAEDTLTRRSRVL GDDHPHTLRSANNLAFHRAAVGEHQVARELAEDTLTRCRRVLGDDHPDTLASAHNLAIDLSALGEHQAARELAEETLTRR RRLLGDDHPHTRDSAGQLELLLEQLGPAL >Mature_829_residues MWSFWQAAGMDVGTGARGPVGGESASSAGSGGGVDFFVSYTGADEAWATWVAEVLEAAGRTVAVQAWDSPAGENFVTWIS VQMGAAARTVAVCSQAYFASHWCTQEWTGALAGRKLTPLRVADCPVPPVLSTISYRDLFDVDEPVARRRLLEAVGLVHPV RVSGGFPGRPAAPPSVGAVFPGRLPAVWNVPARNLLFTGRDTLLDGLRTQLAAGTGRIAIAALRGAGGVGKSQLAVEFAW RYAADYQLVWWVDAETPAGLLAGLAALANTLGIGSGDLPVRAEEALAELGRRQSWLLVYDNVGDPTTLARMLPPATGRLV VTCRDPGVGRVGVELVEVGEFTRAESFALLRRYLPTLSDTAADQLADALGDLPLAVDQAGAFLATSGIPVHDYLALLATR PALLLAEETLHHPGLAATVTAARERLGSDHPGAAGLLDRLAFLAPEPIPLRPAGSEWLALGDPYTTHTALAAISRLALAR RTDTTLQLHRLVHALLRARLTVDQRRTALAGALDLLATVYPGEAEDPSAWPTYATLTPHVTAVAGHLADFPGLAEPDGFR LLLHRTCWYLHCSGQNHSVRTLSHTTRTRWITTLGADHPDSQIITTALATALADLGEHRAARELAEDTLTRRSRVLGDDH PLTLQSANNLANQMAALGEHQAARKLAEDTLTRMRRLLGHDHPDTLASANNLTLLLADLGEHQAARELAEDTLTRRSRVL GDDHPHTLRSANNLAFHRAAVGEHQVARELAEDTLTRCRRVLGDDHPDTLASAHNLAIDLSALGEHQAARELAEETLTRR RRLLGDDHPHTRDSAGQLELLLEQLGPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI110735431, Length=166, Percent_Identity=32.5301204819277, Blast_Score=87, Evalue=7e-17, Organism=Homo sapiens, GI194306559, Length=166, Percent_Identity=32.5301204819277, Blast_Score=87, Evalue=9e-17, Organism=Homo sapiens, GI33620730, Length=166, Percent_Identity=32.5301204819277, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI198041728, Length=181, Percent_Identity=31.4917127071823, Blast_Score=86, Evalue=2e-16, Organism=Homo sapiens, GI41871960, Length=165, Percent_Identity=32.7272727272727, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI198041734, Length=181, Percent_Identity=31.4917127071823, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI198041731, Length=181, Percent_Identity=31.4917127071823, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI12383062, Length=181, Percent_Identity=31.4917127071823, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI41871955, Length=165, Percent_Identity=32.7272727272727, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI41871946, Length=165, Percent_Identity=32.7272727272727, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI34304360, Length=227, Percent_Identity=29.9559471365639, Blast_Score=80, Evalue=8e-15, Organism=Homo sapiens, GI91825557, Length=138, Percent_Identity=34.0579710144928, Blast_Score=74, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71984524, Length=180, Percent_Identity=30, Blast_Score=87, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71984517, Length=180, Percent_Identity=30, Blast_Score=87, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71984527, Length=180, Percent_Identity=30, Blast_Score=87, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71984535, Length=180, Percent_Identity=30, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI17647555, Length=182, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88690; Mature: 88690
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWSFWQAAGMDVGTGARGPVGGESASSAGSGGGVDFFVSYTGADEAWATWVAEVLEAAGR CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC TVAVQAWDSPAGENFVTWISVQMGAAARTVAVCSQAYFASHWCTQEWTGALAGRKLTPLR EEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEE VADCPVPPVLSTISYRDLFDVDEPVARRRLLEAVGLVHPVRVSGGFPGRPAAPPSVGAVF ECCCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC PGRLPAVWNVPARNLLFTGRDTLLDGLRTQLAAGTGRIAIAALRGAGGVGKSQLAVEFAW CCCCCCEECCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH RYAADYQLVWWVDAETPAGLLAGLAALANTLGIGSGDLPVRAEEALAELGRRQSWLLVYD HHCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEC NVGDPTTLARMLPPATGRLVVTCRDPGVGRVGVELVEVGEFTRAESFALLRRYLPTLSDT CCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH AADQLADALGDLPLAVDQAGAFLATSGIPVHDYLALLATRPALLLAEETLHHPGLAATVT HHHHHHHHHCCCCEEHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH AARERLGSDHPGAAGLLDRLAFLAPEPIPLRPAGSEWLALGDPYTTHTALAAISRLALAR HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH RTDTTLQLHRLVHALLRARLTVDQRRTALAGALDLLATVYPGEAEDPSAWPTYATLTPHV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHH TAVAGHLADFPGLAEPDGFRLLLHRTCWYLHCSGQNHSVRTLSHTTRTRWITTLGADHPD HHHHHHHHCCCCCCCCCCHHHHEECCEEEEEECCCCCCEEEHHHHHHHHEEEECCCCCCC SQIITTALATALADLGEHRAARELAEDTLTRRSRVLGDDHPLTLQSANNLANQMAALGEH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH QAARKLAEDTLTRMRRLLGHDHPDTLASANNLTLLLADLGEHQAARELAEDTLTRRSRVL HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHC GDDHPHTLRSANNLAFHRAAVGEHQVARELAEDTLTRCRRVLGDDHPDTLASAHNLAIDL CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEH SALGEHQAARELAEETLTRRRRLLGDDHPHTRDSAGQLELLLEQLGPAL HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MWSFWQAAGMDVGTGARGPVGGESASSAGSGGGVDFFVSYTGADEAWATWVAEVLEAAGR CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC TVAVQAWDSPAGENFVTWISVQMGAAARTVAVCSQAYFASHWCTQEWTGALAGRKLTPLR EEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEE VADCPVPPVLSTISYRDLFDVDEPVARRRLLEAVGLVHPVRVSGGFPGRPAAPPSVGAVF ECCCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC PGRLPAVWNVPARNLLFTGRDTLLDGLRTQLAAGTGRIAIAALRGAGGVGKSQLAVEFAW CCCCCCEECCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH RYAADYQLVWWVDAETPAGLLAGLAALANTLGIGSGDLPVRAEEALAELGRRQSWLLVYD HHCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEC NVGDPTTLARMLPPATGRLVVTCRDPGVGRVGVELVEVGEFTRAESFALLRRYLPTLSDT CCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH AADQLADALGDLPLAVDQAGAFLATSGIPVHDYLALLATRPALLLAEETLHHPGLAATVT HHHHHHHHHCCCCEEHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH AARERLGSDHPGAAGLLDRLAFLAPEPIPLRPAGSEWLALGDPYTTHTALAAISRLALAR HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH RTDTTLQLHRLVHALLRARLTVDQRRTALAGALDLLATVYPGEAEDPSAWPTYATLTPHV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHH TAVAGHLADFPGLAEPDGFRLLLHRTCWYLHCSGQNHSVRTLSHTTRTRWITTLGADHPD HHHHHHHHCCCCCCCCCCHHHHEECCEEEEEECCCCCCEEEHHHHHHHHEEEECCCCCCC SQIITTALATALADLGEHRAARELAEDTLTRRSRVLGDDHPLTLQSANNLANQMAALGEH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH QAARKLAEDTLTRMRRLLGHDHPDTLASANNLTLLLADLGEHQAARELAEDTLTRRSRVL HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHC GDDHPHTLRSANNLAFHRAAVGEHQVARELAEDTLTRCRRVLGDDHPDTLASAHNLAIDL CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEH SALGEHQAARELAEETLTRRRRLLGDDHPHTRDSAGQLELLLEQLGPAL HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA