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The map label for this gene is cbiD [H]

Identifier: 158314253

GI number: 158314253

Start: 2883520

End: 2884785

Strand: Direct

Name: cbiD [H]

Synonym: Franean1_2423

Alternate gene names: 158314253

Gene position: 2883520-2884785 (Clockwise)

Preceding gene: 158314252

Following gene: 158314255

Centisome position: 32.1

GC content: 74.25

Gene sequence:

>1266_bases
GTGGAGACGGAACCGGCCCCTGATCCGGTACCGGGGGCGGAAGGCGCGCCCACGCCCGCATCCGCGCCGGGACTGGAACC
GCGAGGTGCGTCCGCGCCGGGGACCGCCGGCGAGCGGTCGGGCCGGCGGTCCGGCGCCGACCGCGGCACGCTGAGGTACG
GCTGGACCACCGGCGCCTGCGCTACGGCGGCGGCGACGGCCGCCTATACCGCCCTGCTGACCGGCGAGTTCCCCGATCCG
GTGACCATCACCCTGCCCGGCGGGGCCCGGCCCGCGTTCGCGCTGGCCCGCGAGTGGCTCGGGCCCGACTCGGCCACCGC
GGCCGTGATCAAGGACGCTGGGGACGACCCCGACGTCACGCACGGCGCCGTCGTGACGGCGTCCATCCGCCGCGGATCGC
CGGGAACCGGCGTGGTGTTCCGCGCCGGCGTGGGAGTGGGCACGGTGACCAGGCCGGGCCTACCGCTGGCGGTGGGGGAG
CCGGCGATCAACCCGGTTCCGCGCCGGATGATGCGCGCCGCCGTCGCCGAAGTCGCCGCGGCACACGGCGACGGCCCCGC
GCACACCGCCGGAACCACGGCCAGGGCCAGTACCGCCGTCGTCGACGTCGAGATCGAGATCGGTGTGGACGGCGGAGCGG
AGCTGGCGACCCGAACCTGGAACCCGCGGCTGGGAATCCTCGGGGGGCTGTCGATCCTCGGCACCACCGGAATAGTCGTC
CCCTATTCCTGCTCCGCGTGGATAGACAGCATTCGCCGTGGCATCGACGTTGCCCGTGCGGCCGGGCACCGGCATGTGGC
CGCGTGCACCGGCAGCACCTCGGAGCAGGTCGCCCGCGACCGGTACGGGCTTCCCGACGAAGCCCTGCTCGACATGGGTG
ACTTCGCCGGCGCCGTGCTCAAGTACCTGCGGCGTCATCCGATCCCGCGGCTGACGGTCGTCGGCGGGGTCGGCAAGCTG
GCGAAACTCGCCGCCGGACACCTCGACCTGCACTCCGGCCGCTCGCAGGTCGACCTCGCCGGCCTCGCCGCGCTCGCCCG
CTCCGCCGAAGCGGGCGCGGATCTTCAGGCCGCGATCCTCGGAGCCAACACCGCTCTCGGTGCGCTACGGATCTGCGCCG
ACGCGGGGATAGCTCTCGGTGATCTCATCGCCGCCGGCGCGCGCAGGACCGCCTGCGAGGTTCTGCGCGAGGCGCCGGTG
ACGGTCGACGTCCTCGTCATCGACCGGGCCGGAGTGGTGGTGGGGTATTCGGACGGGACCTGCTGA

Upstream 100 bases:

>100_bases
GCGGGCTTGAGTACCTCGTGGTGCAGGGCCGGCGCGGCGGCAGCGCGATGGCCGCGGCGGCCGTGAACGCCCTCGCCCGC
GACGCGGACTGACCGGACCG

Downstream 100 bases:

>100_bases
CCGGGGGCCGAAACCAGATTGACCGGCACCGAAACCAGATTGCTGCCCGCGGCGAATTCCGCCGGAATTCGCCGCGGGCG
GATGGCTGGACCGTCGGCTA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
METEPAPDPVPGAEGAPTPASAPGLEPRGASAPGTAGERSGRRSGADRGTLRYGWTTGACATAAATAAYTALLTGEFPDP
VTITLPGGARPAFALAREWLGPDSATAAVIKDAGDDPDVTHGAVVTASIRRGSPGTGVVFRAGVGVGTVTRPGLPLAVGE
PAINPVPRRMMRAAVAEVAAAHGDGPAHTAGTTARASTAVVDVEIEIGVDGGAELATRTWNPRLGILGGLSILGTTGIVV
PYSCSAWIDSIRRGIDVARAAGHRHVAACTGSTSEQVARDRYGLPDEALLDMGDFAGAVLKYLRRHPIPRLTVVGGVGKL
AKLAAGHLDLHSGRSQVDLAGLAALARSAEAGADLQAAILGANTALGALRICADAGIALGDLIAAGARRTACEVLREAPV
TVDVLVIDRAGVVVGYSDGTC

Sequences:

>Translated_421_residues
METEPAPDPVPGAEGAPTPASAPGLEPRGASAPGTAGERSGRRSGADRGTLRYGWTTGACATAAATAAYTALLTGEFPDP
VTITLPGGARPAFALAREWLGPDSATAAVIKDAGDDPDVTHGAVVTASIRRGSPGTGVVFRAGVGVGTVTRPGLPLAVGE
PAINPVPRRMMRAAVAEVAAAHGDGPAHTAGTTARASTAVVDVEIEIGVDGGAELATRTWNPRLGILGGLSILGTTGIVV
PYSCSAWIDSIRRGIDVARAAGHRHVAACTGSTSEQVARDRYGLPDEALLDMGDFAGAVLKYLRRHPIPRLTVVGGVGKL
AKLAAGHLDLHSGRSQVDLAGLAALARSAEAGADLQAAILGANTALGALRICADAGIALGDLIAAGARRTACEVLREAPV
TVDVLVIDRAGVVVGYSDGTC
>Mature_421_residues
METEPAPDPVPGAEGAPTPASAPGLEPRGASAPGTAGERSGRRSGADRGTLRYGWTTGACATAAATAAYTALLTGEFPDP
VTITLPGGARPAFALAREWLGPDSATAAVIKDAGDDPDVTHGAVVTASIRRGSPGTGVVFRAGVGVGTVTRPGLPLAVGE
PAINPVPRRMMRAAVAEVAAAHGDGPAHTAGTTARASTAVVDVEIEIGVDGGAELATRTWNPRLGILGGLSILGTTGIVV
PYSCSAWIDSIRRGIDVARAAGHRHVAACTGSTSEQVARDRYGLPDEALLDMGDFAGAVLKYLRRHPIPRLTVVGGVGKL
AKLAAGHLDLHSGRSQVDLAGLAALARSAEAGADLQAAILGANTALGALRICADAGIALGDLIAAGARRTACEVLREAPV
TVDVLVIDRAGVVVGYSDGTC

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 42207; Mature: 42207

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00889 CNMP_BINDING_2 ; PS00806 ALDOLASE_CLASS_II_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEPAPDPVPGAEGAPTPASAPGLEPRGASAPGTAGERSGRRSGADRGTLRYGWTTGAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHH
ATAAATAAYTALLTGEFPDPVTITLPGGARPAFALAREWLGPDSATAAVIKDAGDDPDVT
HHHHHHHHHHHEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHEEECCCCCCCCC
HGAVVTASIRRGSPGTGVVFRAGVGVGTVTRPGLPLAVGEPAINPVPRRMMRAAVAEVAA
CCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
AHGDGPAHTAGTTARASTAVVDVEIEIGVDGGAELATRTWNPRLGILGGLSILGTTGIVV
HCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHEECCCCCCCHHHCHHHHCCCCEEE
PYSCSAWIDSIRRGIDVARAAGHRHVAACTGSTSEQVARDRYGLPDEALLDMGDFAGAVL
ECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
KYLRRHPIPRLTVVGGVGKLAKLAAGHLDLHSGRSQVDLAGLAALARSAEAGADLQAAIL
HHHHHCCCCEEEEECCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
GANTALGALRICADAGIALGDLIAAGARRTACEVLREAPVTVDVLVIDRAGVVVGYSDGT
ECCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCC
C
C
>Mature Secondary Structure
METEPAPDPVPGAEGAPTPASAPGLEPRGASAPGTAGERSGRRSGADRGTLRYGWTTGAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHH
ATAAATAAYTALLTGEFPDPVTITLPGGARPAFALAREWLGPDSATAAVIKDAGDDPDVT
HHHHHHHHHHHEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHEEECCCCCCCCC
HGAVVTASIRRGSPGTGVVFRAGVGVGTVTRPGLPLAVGEPAINPVPRRMMRAAVAEVAA
CCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
AHGDGPAHTAGTTARASTAVVDVEIEIGVDGGAELATRTWNPRLGILGGLSILGTTGIVV
HCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHEECCCCCCCHHHCHHHHCCCCEEE
PYSCSAWIDSIRRGIDVARAAGHRHVAACTGSTSEQVARDRYGLPDEALLDMGDFAGAVL
ECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
KYLRRHPIPRLTVVGGVGKLAKLAAGHLDLHSGRSQVDLAGLAALARSAEAGADLQAAIL
HHHHHCCCCEEEEECCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
GANTALGALRICADAGIALGDLIAAGARRTACEVLREAPVTVDVLVIDRAGVVVGYSDGT
ECCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCC
C
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA