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The map label for this gene is yeaM [H]

Identifier: 158314170

GI number: 158314170

Start: 2785361

End: 2786152

Strand: Direct

Name: yeaM [H]

Synonym: Franean1_2338

Alternate gene names: 158314170

Gene position: 2785361-2786152 (Clockwise)

Preceding gene: 158314167

Following gene: 158314171

Centisome position: 31.01

GC content: 73.23

Gene sequence:

>792_bases
ATGGGCGTCGACTCGGGCGGCGGGCCACCGCCAGGCCGTAGAGTTCTGTCGATGAACCGCCGTTTCCTGGCCGGGCCCGA
GCTGCGGCGGTTGACGGACCGGGAACGGATCGACTGGCACGACCACACCGACCACCAGCTCATCTATCCGGGCACCGGGG
TCCTGCGAGTGGTGACCCGGGTCGGTTCGTGGGTGGTGCCGCCGCTGCGGGCTGTGTGGCTGCCGGCCGGTGTGGCGCAC
GCGCACCAGGCGCACGGCCCCACACACATGCACTCACTGGCCTTCTCGGACGTGGACGACCCGTTCGGTTCCCCCGACCC
GACCGTGGTCGCAGTACCCGCCCTGCTGCGTGAGATCATCCGGGCGCTCACCGCGACGGGCCTGGCCGGCGCCGACCGCC
GCGACCTGACCGCCGTCCTGCTGCGCTCGCTGCGGCCGGTGACCGAGCTGCGGCTTTGCCTGCCCCAGCCGCGCGACGAC
CGCCTCGTCGCTCTCACGGCGGCGCTGGCCGCTGACCCCGCCGATCCGCGGACCCTGGCCGAGCTCGGCGCCGCCGTAGG
GGCGAGCGAACGTACCCTGAGCCGCCTGTTCCGCCGTCAGACCGGGATGACCTTCCCGCAGTGGCGGGCCCAGCTCCGGC
TGCACCATGGCCTTACCCTGCTCGCCGGGGGTGAGCCGGTCACCACCGTCGCGTTTGCCTGTGGCTACAGCAACCCGAGC
GCCTTCACCGCCGCGTTCCGGGATGCCTTCGGCGTCACGCCCGCCCGCTACGCCCGCGAGACGCGGCAGTGA

Upstream 100 bases:

>100_bases
CACCTCCGTGACGAGAACGCAGCCGTCGGGGGCGGAAATCCGGTGCGGCACGGTCATGACGGTCTCCCTGACGTCGGTTC
TTCGAGGGCGGACCGCCAGC

Downstream 100 bases:

>100_bases
ACGATCCCGGAAGGTCCTGCTTCATCGTGAAGCCAGGTGGATCCGCACCCCGCAGTCCTCGTCGTCGACGCCCTCAGACG
ACACGTGGCGTTACTGCTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MGVDSGGGPPPGRRVLSMNRRFLAGPELRRLTDRERIDWHDHTDHQLIYPGTGVLRVVTRVGSWVVPPLRAVWLPAGVAH
AHQAHGPTHMHSLAFSDVDDPFGSPDPTVVAVPALLREIIRALTATGLAGADRRDLTAVLLRSLRPVTELRLCLPQPRDD
RLVALTAALAADPADPRTLAELGAAVGASERTLSRLFRRQTGMTFPQWRAQLRLHHGLTLLAGGEPVTTVAFACGYSNPS
AFTAAFRDAFGVTPARYARETRQ

Sequences:

>Translated_263_residues
MGVDSGGGPPPGRRVLSMNRRFLAGPELRRLTDRERIDWHDHTDHQLIYPGTGVLRVVTRVGSWVVPPLRAVWLPAGVAH
AHQAHGPTHMHSLAFSDVDDPFGSPDPTVVAVPALLREIIRALTATGLAGADRRDLTAVLLRSLRPVTELRLCLPQPRDD
RLVALTAALAADPADPRTLAELGAAVGASERTLSRLFRRQTGMTFPQWRAQLRLHHGLTLLAGGEPVTTVAFACGYSNPS
AFTAAFRDAFGVTPARYARETRQ
>Mature_262_residues
GVDSGGGPPPGRRVLSMNRRFLAGPELRRLTDRERIDWHDHTDHQLIYPGTGVLRVVTRVGSWVVPPLRAVWLPAGVAHA
HQAHGPTHMHSLAFSDVDDPFGSPDPTVVAVPALLREIIRALTATGLAGADRRDLTAVLLRSLRPVTELRLCLPQPRDDR
LVALTAALAADPADPRTLAELGAAVGASERTLSRLFRRQTGMTFPQWRAQLRLHHGLTLLAGGEPVTTVAFACGYSNPSA
FTAAFRDAFGVTPARYARETRQ

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=33.0357142857143, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28566; Mature: 28435

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVDSGGGPPPGRRVLSMNRRFLAGPELRRLTDRERIDWHDHTDHQLIYPGTGVLRVVTR
CCCCCCCCCCCCHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHH
VGSWVVPPLRAVWLPAGVAHAHQAHGPTHMHSLAFSDVDDPFGSPDPTVVAVPALLREII
HCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHH
RALTATGLAGADRRDLTAVLLRSLRPVTELRLCLPQPRDDRLVALTAALAADPADPRTLA
HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEHHHHHHCCCCCHHHHH
ELGAAVGASERTLSRLFRRQTGMTFPQWRAQLRLHHGLTLLAGGEPVTTVAFACGYSNPS
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCHHHHEEECCCCCCH
AFTAAFRDAFGVTPARYARETRQ
HHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
GVDSGGGPPPGRRVLSMNRRFLAGPELRRLTDRERIDWHDHTDHQLIYPGTGVLRVVTR
CCCCCCCCCCCHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHH
VGSWVVPPLRAVWLPAGVAHAHQAHGPTHMHSLAFSDVDDPFGSPDPTVVAVPALLREII
HCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHH
RALTATGLAGADRRDLTAVLLRSLRPVTELRLCLPQPRDDRLVALTAALAADPADPRTLA
HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEHHHHHHCCCCCHHHHH
ELGAAVGASERTLSRLFRRQTGMTFPQWRAQLRLHHGLTLLAGGEPVTTVAFACGYSNPS
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCHHHHEEECCCCCCH
AFTAAFRDAFGVTPARYARETRQ
HHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]