| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is nreB [H]
Identifier: 158314131
GI number: 158314131
Start: 2748096
End: 2749394
Strand: Direct
Name: nreB [H]
Synonym: Franean1_2298
Alternate gene names: 158314131
Gene position: 2748096-2749394 (Clockwise)
Preceding gene: 158314130
Following gene: 158314132
Centisome position: 30.6
GC content: 75.6
Gene sequence:
>1299_bases GTGCGTCGGGCGGTCGTGGACGCCGTGCGGGCGACCTACGGGCCGGCCGGCTGGACCGCCACCATCTTCGTGGCCCAGTC GGCGGTGGTCGCCACCGTGGCCTTCGTCGTGGTCCTCGTCGCGATCGCCGCCGGCATCCCGATGATGTTCGTGGCGCTTC TCGGCCTCCCGCTGGTGTGGTTCGCCCTGTTCAGCGCGCGGATGGCGGCGGTCGTGGACGCCTGGCGGTTCCGGGTGGTG CTCCGCCAGCGGCTGTGGCTTCGTCCCCCGCCGGGCTCGGTGCCCCCCGGGACGCCCCCCGCCGACACCCCGAGCTGGTT CCGCCGCGGCTGGCTCCGGCTGCGCGGCCGGGGGAACTGGCTGGAGGTCCTCTACGCCCTGGTCATCCTGCCGCTGTTCG GCTGGCTGGGCGCCTGGGTGGTCTTCTGCGCGTGGGGTGGCGGGCTGTCGTTCCTGATGTTCCCGCTGTACGGGCACGCG CTCGCCGACGGCGGCCGGGTCTTCGGGATGAACCTGGGCTACGGCGGCTCGCTGGCATTCCACGTGGGTGTCGGGCTGGT CGTCCTGCTCGCCGCGCCGTGGATCGCCCGCGGGGTGGTCACCGCGCACCTCGCGCTGGCGCGGCTGGTGCTCTCCCCAC CGGGCGATCCCGAGCTGCTGGCCCGGGTGGACGACCTGGAGTCCAGCCGGGCCGGGATGGTCGCCGCGGCCGCCGCCGAG CGGCGCCGTATCGAGCGGGACCTGCACGACGGCGCCCAGCAGCGCCTCGTCGCCGTCGCGATGACCCTGGGCCGCGCCCA GGCGCGCTTCGCCGACGACCCGGACGGCGCCCACGGGCTCATCGCCGAAGCCCACGCGGAGACCAAGCGGGCGCTGGTCG AGCTGCGGGACCTGGCCCGCGGGATCCATCCGTCCGTGCTCACGGACCGCGGGCTGGACGCCGCGCTGTCGGGCCTCGCC GCCCGCTCCCCGGTGCCCGTCACCCTCGACATAGAGGCCACACCGCGGCCGGACATCTCGACCGAGTCGGTGGCCTACTT CTTCGTCGCGGAGGCGCTGACCAACATCGCCCGCCACGCGCAGGCCTGGCACGTCCGCATCGCCGTGCGCCGGGCCGGGA ACCGGCTGACGGTCGAGGTGTCCGACGACGGGCGGGGCGGGGCCAGGGAGGGCGCCGGCTCCGGGATCGCCGGCCTGCGT GACCGCGCCCGCGCCGTCGACGGCGCGTTCGAACTCGTCAGCCCGCCCGGTGGCGGGACGACCCTGCGGATGGAGCTGCC ATGCGGGGACGCGACATGA
Upstream 100 bases:
>100_bases GGCGCCCGGAACAGCGGCGCCCGGAACAGCGGCGCCCGGAACAGCGGCGCCCGGAACAGCGGCGCCCGGAACAGCGGCGC CCGGAACAGCGGCGCGTGGG
Downstream 100 bases:
>100_bases CCGGGGCCGGCCGGCCCGGGGCGGTGACCCGGTGAATATCATGATCGCGGAGGACTCCGTGCTGCTGCGGGAGGGGCTGA CCAGGCTCCTCGAGGAGGAC
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Nitrogen regulation protein B [H]
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MRRAVVDAVRATYGPAGWTATIFVAQSAVVATVAFVVVLVAIAAGIPMMFVALLGLPLVWFALFSARMAAVVDAWRFRVV LRQRLWLRPPPGSVPPGTPPADTPSWFRRGWLRLRGRGNWLEVLYALVILPLFGWLGAWVVFCAWGGGLSFLMFPLYGHA LADGGRVFGMNLGYGGSLAFHVGVGLVVLLAAPWIARGVVTAHLALARLVLSPPGDPELLARVDDLESSRAGMVAAAAAE RRRIERDLHDGAQQRLVAVAMTLGRAQARFADDPDGAHGLIAEAHAETKRALVELRDLARGIHPSVLTDRGLDAALSGLA ARSPVPVTLDIEATPRPDISTESVAYFFVAEALTNIARHAQAWHVRIAVRRAGNRLTVEVSDDGRGGAREGAGSGIAGLR DRARAVDGAFELVSPPGGGTTLRMELPCGDAT
Sequences:
>Translated_432_residues MRRAVVDAVRATYGPAGWTATIFVAQSAVVATVAFVVVLVAIAAGIPMMFVALLGLPLVWFALFSARMAAVVDAWRFRVV LRQRLWLRPPPGSVPPGTPPADTPSWFRRGWLRLRGRGNWLEVLYALVILPLFGWLGAWVVFCAWGGGLSFLMFPLYGHA LADGGRVFGMNLGYGGSLAFHVGVGLVVLLAAPWIARGVVTAHLALARLVLSPPGDPELLARVDDLESSRAGMVAAAAAE RRRIERDLHDGAQQRLVAVAMTLGRAQARFADDPDGAHGLIAEAHAETKRALVELRDLARGIHPSVLTDRGLDAALSGLA ARSPVPVTLDIEATPRPDISTESVAYFFVAEALTNIARHAQAWHVRIAVRRAGNRLTVEVSDDGRGGAREGAGSGIAGLR DRARAVDGAFELVSPPGGGTTLRMELPCGDAT >Mature_432_residues MRRAVVDAVRATYGPAGWTATIFVAQSAVVATVAFVVVLVAIAAGIPMMFVALLGLPLVWFALFSARMAAVVDAWRFRVV LRQRLWLRPPPGSVPPGTPPADTPSWFRRGWLRLRGRGNWLEVLYALVILPLFGWLGAWVVFCAWGGGLSFLMFPLYGHA LADGGRVFGMNLGYGGSLAFHVGVGLVVLLAAPWIARGVVTAHLALARLVLSPPGDPELLARVDDLESSRAGMVAAAAAE RRRIERDLHDGAQQRLVAVAMTLGRAQARFADDPDGAHGLIAEAHAETKRALVELRDLARGIHPSVLTDRGLDAALSGLA ARSPVPVTLDIEATPRPDISTESVAYFFVAEALTNIARHAQAWHVRIAVRRAGNRLTVEVSDDGRGGAREGAGSGIAGLR DRARAVDGAFELVSPPGGGTTLRMELPCGDAT
Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxyg
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1787474, Length=189, Percent_Identity=29.1005291005291, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR011712 - InterPro: IPR005467 - InterPro: IPR017203 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 45958; Mature: 45958
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRAVVDAVRATYGPAGWTATIFVAQSAVVATVAFVVVLVAIAAGIPMMFVALLGLPLVW CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH FALFSARMAAVVDAWRFRVVLRQRLWLRPPPGSVPPGTPPADTPSWFRRGWLRLRGRGNW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCH LEVLYALVILPLFGWLGAWVVFCAWGGGLSFLMFPLYGHALADGGRVFGMNLGYGGSLAF HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH HVGVGLVVLLAAPWIARGVVTAHLALARLVLSPPGDPELLARVDDLESSRAGMVAAAAAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH RRRIERDLHDGAQQRLVAVAMTLGRAQARFADDPDGAHGLIAEAHAETKRALVELRDLAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC GIHPSVLTDRGLDAALSGLAARSPVPVTLDIEATPRPDISTESVAYFFVAEALTNIARHA CCCCCHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH QAWHVRIAVRRAGNRLTVEVSDDGRGGAREGAGSGIAGLRDRARAVDGAFELVSPPGGGT HHHHEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCE TLRMELPCGDAT EEEEECCCCCCC >Mature Secondary Structure MRRAVVDAVRATYGPAGWTATIFVAQSAVVATVAFVVVLVAIAAGIPMMFVALLGLPLVW CCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH FALFSARMAAVVDAWRFRVVLRQRLWLRPPPGSVPPGTPPADTPSWFRRGWLRLRGRGNW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCH LEVLYALVILPLFGWLGAWVVFCAWGGGLSFLMFPLYGHALADGGRVFGMNLGYGGSLAF HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH HVGVGLVVLLAAPWIARGVVTAHLALARLVLSPPGDPELLARVDDLESSRAGMVAAAAAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH RRRIERDLHDGAQQRLVAVAMTLGRAQARFADDPDGAHGLIAEAHAETKRALVELRDLAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC GIHPSVLTDRGLDAALSGLAARSPVPVTLDIEATPRPDISTESVAYFFVAEALTNIARHA CCCCCHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH QAWHVRIAVRRAGNRLTVEVSDDGRGGAREGAGSGIAGLRDRARAVDGAFELVSPPGGGT HHHHEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCE TLRMELPCGDAT EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12426351 [H]