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The map label for this gene is yciR [C]

Identifier: 158314117

GI number: 158314117

Start: 2728851

End: 2730941

Strand: Direct

Name: yciR [C]

Synonym: Franean1_2284

Alternate gene names: 158314117

Gene position: 2728851-2730941 (Clockwise)

Preceding gene: 158314116

Following gene: 158314118

Centisome position: 30.38

GC content: 77.91

Gene sequence:

>2091_bases
GTGATCGCTGGGGTTGCGGGGCTGGCCGCGGCGGCTTCCTCTGTCGGCATGCTGATCGTCACTGCGGACGGCCGGGTGGC
GTGGGTCAACGACGCCCTCGTCGACCTCGTCACCGGGACGCGGAACCCCGACTCGCCGTTCGAGGCGCGGCTCGCGGTCG
CCGAGGCCGGCCTGCCGCTGACCGGGCTGCACCCGGCGGCCCCGCCCGCCGTCCTCGACTGGGCCGGCGCCGACGGCGAG
CCGCGCCGGCTGCGCATCAGCTGCCGCGATATGAGCGCCGGGCAGCCCTCGGAGCTGCTGCTCTTCGAGATCGTCGACCT
CACCGGCGAGGCCGCCGACGCCGCGCGGGCCGCCGAGATCGCCGCCACCGAGGCCGCCCTGGCCGCCCTGGCGGCCGGCC
AGCGCCCGGCGCCCGCCGACTCCGGCCTCGCGGAGGATCTCCCACCCGCCGGGTCCTCCGGCCCGGCCGCCGGCGGCCGG
GACACCGACGCGGCGGGCGGCCTCGATCCCGAGGACGCCGCCTGGCTCGACGCCGCGGCGGCGATCGTGCTGGCCGCGGG
CACCGAAGCGCCGTCCCCGGCCCAGCCCGGCGGCGGCCCCGAAGCGGCGGACGCCGGATACGCCCTCGACCACCCGGACA
ACGCCCTCGACCACGTCGCCGACCACGGCGTCGACCACGCGGCCGGCGGCGCCGACGGTCACGCGGCCGACGCCGCCGCG
GCGGCCGGCGGCGCACTCCCGGCCGCCCCCGCCGTCGACCCGCTCACCGGGTTCGCCACCCGGTACGCCATGGCCGAGGA
GCTGGACGGCCGTATCGCGGCCGCGGCAACCGCGGCCGCCGGCGCCGGCACGGCGGTCGAGGCGGAGACCTCGGGCCCGG
CGGGCCCACCGGGCTGCCTGCTGCTGCTCGACGTCGACCACCTCGCCGACGTCAACGACCTGCAGGGCCACACCGCGGGC
GACGCCGTCCTGCGCGGGCTCGCCCACAGCCTGCGCGCCGAGCTGCCCGAGGCGATGCTCGGCCGGCTCGGCGGGGATGA
GTTCGCCGTCCTCCTGCCCACCGGTGGCGGCGGCGAGGGGCTGGCCGTCGCCGAGCGGCTGTGCGCCGCGCTCGCCACCA
GGCCCGTCGCGCCCGGCGAGCTCCCGGCCCGGGCCACGGTCAGCATCGGCGTCGTCCCGCTGGACCTGGCGGCCGGCAGC
GAGGCCGCGTTTGCCTGGGCGGATCTCGCGCTGCGGGAGGCGAAGCGGGCCGGGCGCAACCGGGCCCGGCTGTTCACCCG
GGAGCAGTACGACGAGGCCGCGCTGCGGGTGACGGTGACCAGCCGGGTCGCCGCCGCGCTCGACAGCGGCCAGATGTCGC
TGGACGTGCTGCCCCTCGTCGATCTCGCCAGCCGCGAGGTGGTCGGCTTCGAGCTGCTCTCCCGGCTGCGGGACGGCGTG
TGGCCCGAGCTCGGGCCGCGGGGCTTCCTCGCGGCGGCCGAGCACACCGACCTGGGCCTGCACCTCGACCGGTGGGTCGT
CCTCCGGGCGGTCAACGCCCTGGTCAGCGGCGTGCCGGGCCGGCTGTACGTCAACCTGGCCGCGCGGTCCCTGCACGACC
CCGCCTTCGGTGACTTCGTGCTCTCCACCCTGCGGGACGGCCGCGTCGACCCCTCCCGGCTGGGCCTGGAGATCTCCGAG
AGCGCGGCGGTGGCCAGCCCGGACGCGGCCCGGCGGCTTGCCGAGCAGCTCGGCGCCGCCGGCTGCCCCGTCCTGCTGGA
CGACTTCGGGATGCAGACGGGCGCGGTCGTCGCGCTGCGCAACCTCCCGCTGTGGGCCGTGAAGATCGACGCGAACGTCG
TCCGCAACGCCGACGCGAACCCGCGCGACCGCTCCCTGGTGGAGGCGGTCGTCCAGATCGCGCGGACGGCCGGCATGCTG
GTCATCGCCGAGGGGGTGGACCGCGCGTCGCTGCCGCAGGTGCTGCTCGACCTCGGTGTGGGCCTGGCGCAGGGCTATCA
TGTCGGCCGTCCGCGCCGCCTCACCGAGCTGCTCGGCGGCCCGGACGGCGACGACGTCACGACGGTGATGAGCCTCGGCA
ACCGGCGGTGA

Upstream 100 bases:

>100_bases
CGCCAGTGGAAGTGGTGCCCGGCGCGGCGCGGTGAACGACGGTTGGGGTCCTTTCGGACATTAGACTGCGCACTCCGGGC
GGCGCGGTGCGGGAGGTGCG

Downstream 100 bases:

>100_bases
CGGCTGTCCTCTGAGCAGCCGCACGCCGGGCAGACGGGGCGATGCGGCTTAGAAGGGCCGCGCCGCGCACCGGGTGCCGT
CACCGTGCGTAGTGTCAGCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 696; Mature: 696

Protein sequence:

>696_residues
MIAGVAGLAAAASSVGMLIVTADGRVAWVNDALVDLVTGTRNPDSPFEARLAVAEAGLPLTGLHPAAPPAVLDWAGADGE
PRRLRISCRDMSAGQPSELLLFEIVDLTGEAADAARAAEIAATEAALAALAAGQRPAPADSGLAEDLPPAGSSGPAAGGR
DTDAAGGLDPEDAAWLDAAAAIVLAAGTEAPSPAQPGGGPEAADAGYALDHPDNALDHVADHGVDHAAGGADGHAADAAA
AAGGALPAAPAVDPLTGFATRYAMAEELDGRIAAAATAAAGAGTAVEAETSGPAGPPGCLLLLDVDHLADVNDLQGHTAG
DAVLRGLAHSLRAELPEAMLGRLGGDEFAVLLPTGGGGEGLAVAERLCAALATRPVAPGELPARATVSIGVVPLDLAAGS
EAAFAWADLALREAKRAGRNRARLFTREQYDEAALRVTVTSRVAAALDSGQMSLDVLPLVDLASREVVGFELLSRLRDGV
WPELGPRGFLAAAEHTDLGLHLDRWVVLRAVNALVSGVPGRLYVNLAARSLHDPAFGDFVLSTLRDGRVDPSRLGLEISE
SAAVASPDAARRLAEQLGAAGCPVLLDDFGMQTGAVVALRNLPLWAVKIDANVVRNADANPRDRSLVEAVVQIARTAGML
VIAEGVDRASLPQVLLDLGVGLAQGYHVGRPRRLTELLGGPDGDDVTTVMSLGNRR

Sequences:

>Translated_696_residues
MIAGVAGLAAAASSVGMLIVTADGRVAWVNDALVDLVTGTRNPDSPFEARLAVAEAGLPLTGLHPAAPPAVLDWAGADGE
PRRLRISCRDMSAGQPSELLLFEIVDLTGEAADAARAAEIAATEAALAALAAGQRPAPADSGLAEDLPPAGSSGPAAGGR
DTDAAGGLDPEDAAWLDAAAAIVLAAGTEAPSPAQPGGGPEAADAGYALDHPDNALDHVADHGVDHAAGGADGHAADAAA
AAGGALPAAPAVDPLTGFATRYAMAEELDGRIAAAATAAAGAGTAVEAETSGPAGPPGCLLLLDVDHLADVNDLQGHTAG
DAVLRGLAHSLRAELPEAMLGRLGGDEFAVLLPTGGGGEGLAVAERLCAALATRPVAPGELPARATVSIGVVPLDLAAGS
EAAFAWADLALREAKRAGRNRARLFTREQYDEAALRVTVTSRVAAALDSGQMSLDVLPLVDLASREVVGFELLSRLRDGV
WPELGPRGFLAAAEHTDLGLHLDRWVVLRAVNALVSGVPGRLYVNLAARSLHDPAFGDFVLSTLRDGRVDPSRLGLEISE
SAAVASPDAARRLAEQLGAAGCPVLLDDFGMQTGAVVALRNLPLWAVKIDANVVRNADANPRDRSLVEAVVQIARTAGML
VIAEGVDRASLPQVLLDLGVGLAQGYHVGRPRRLTELLGGPDGDDVTTVMSLGNRR
>Mature_696_residues
MIAGVAGLAAAASSVGMLIVTADGRVAWVNDALVDLVTGTRNPDSPFEARLAVAEAGLPLTGLHPAAPPAVLDWAGADGE
PRRLRISCRDMSAGQPSELLLFEIVDLTGEAADAARAAEIAATEAALAALAAGQRPAPADSGLAEDLPPAGSSGPAAGGR
DTDAAGGLDPEDAAWLDAAAAIVLAAGTEAPSPAQPGGGPEAADAGYALDHPDNALDHVADHGVDHAAGGADGHAADAAA
AAGGALPAAPAVDPLTGFATRYAMAEELDGRIAAAATAAAGAGTAVEAETSGPAGPPGCLLLLDVDHLADVNDLQGHTAG
DAVLRGLAHSLRAELPEAMLGRLGGDEFAVLLPTGGGGEGLAVAERLCAALATRPVAPGELPARATVSIGVVPLDLAAGS
EAAFAWADLALREAKRAGRNRARLFTREQYDEAALRVTVTSRVAAALDSGQMSLDVLPLVDLASREVVGFELLSRLRDGV
WPELGPRGFLAAAEHTDLGLHLDRWVVLRAVNALVSGVPGRLYVNLAARSLHDPAFGDFVLSTLRDGRVDPSRLGLEISE
SAAVASPDAARRLAEQLGAAGCPVLLDDFGMQTGAVVALRNLPLWAVKIDANVVRNADANPRDRSLVEAVVQIARTAGML
VIAEGVDRASLPQVLLDLGVGLAQGYHVGRPRRLTELLGGPDGDDVTTVMSLGNRR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=28.5046728971963, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI226510982, Length=386, Percent_Identity=28.2383419689119, Blast_Score=119, Evalue=8e-28,
Organism=Escherichia coli, GI87081921, Length=426, Percent_Identity=23.4741784037559, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=27.4193548387097, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=174, Percent_Identity=31.6091954022989, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=26.6129032258064, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI145693134, Length=137, Percent_Identity=33.5766423357664, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=129, Percent_Identity=32.5581395348837, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081845, Length=263, Percent_Identity=25.4752851711027, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081881, Length=124, Percent_Identity=39.5161290322581, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1786584, Length=125, Percent_Identity=35.2, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787816, Length=137, Percent_Identity=34.3065693430657, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=24.5689655172414, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1786507, Length=283, Percent_Identity=22.6148409893993, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=23.5294117647059, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=22.4, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 70420; Mature: 70420

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAGVAGLAAAASSVGMLIVTADGRVAWVNDALVDLVTGTRNPDSPFEARLAVAEAGLPL
CCCCHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
TGLHPAAPPAVLDWAGADGEPRRLRISCRDMSAGQPSELLLFEIVDLTGEAADAARAAEI
CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHCCCHHHHHHHHHH
AATEAALAALAAGQRPAPADSGLAEDLPPAGSSGPAAGGRDTDAAGGLDPEDAAWLDAAA
HHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AIVLAAGTEAPSPAQPGGGPEAADAGYALDHPDNALDHVADHGVDHAAGGADGHAADAAA
HHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHH
AAGGALPAAPAVDPLTGFATRYAMAEELDGRIAAAATAAAGAGTAVEAETSGPAGPPGCL
HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEE
LLLDVDHLADVNDLQGHTAGDAVLRGLAHSLRAELPEAMLGRLGGDEFAVLLPTGGGGEG
EEEEHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCH
LAVAERLCAALATRPVAPGELPARATVSIGVVPLDLAAGSEAAFAWADLALREAKRAGRN
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCH
RARLFTREQYDEAALRVTVTSRVAAALDSGQMSLDVLPLVDLASREVVGFELLSRLRDGV
HHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCC
WPELGPRGFLAAAEHTDLGLHLDRWVVLRAVNALVSGVPGRLYVNLAARSLHDPAFGDFV
CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCHHHHH
LSTLRDGRVDPSRLGLEISESAAVASPDAARRLAEQLGAAGCPVLLDDFGMQTGAVVALR
HHHHHCCCCCHHHCCEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEE
NLPLWAVKIDANVVRNADANPRDRSLVEAVVQIARTAGMLVIAEGVDRASLPQVLLDLGV
CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCC
GLAQGYHVGRPRRLTELLGGPDGDDVTTVMSLGNRR
HHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MIAGVAGLAAAASSVGMLIVTADGRVAWVNDALVDLVTGTRNPDSPFEARLAVAEAGLPL
CCCCHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
TGLHPAAPPAVLDWAGADGEPRRLRISCRDMSAGQPSELLLFEIVDLTGEAADAARAAEI
CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHCCCHHHHHHHHHH
AATEAALAALAAGQRPAPADSGLAEDLPPAGSSGPAAGGRDTDAAGGLDPEDAAWLDAAA
HHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AIVLAAGTEAPSPAQPGGGPEAADAGYALDHPDNALDHVADHGVDHAAGGADGHAADAAA
HHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHH
AAGGALPAAPAVDPLTGFATRYAMAEELDGRIAAAATAAAGAGTAVEAETSGPAGPPGCL
HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEE
LLLDVDHLADVNDLQGHTAGDAVLRGLAHSLRAELPEAMLGRLGGDEFAVLLPTGGGGEG
EEEEHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCH
LAVAERLCAALATRPVAPGELPARATVSIGVVPLDLAAGSEAAFAWADLALREAKRAGRN
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCH
RARLFTREQYDEAALRVTVTSRVAAALDSGQMSLDVLPLVDLASREVVGFELLSRLRDGV
HHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCC
WPELGPRGFLAAAEHTDLGLHLDRWVVLRAVNALVSGVPGRLYVNLAARSLHDPAFGDFV
CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCHHHHH
LSTLRDGRVDPSRLGLEISESAAVASPDAARRLAEQLGAAGCPVLLDDFGMQTGAVVALR
HHHHHCCCCCHHHCCEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEE
NLPLWAVKIDANVVRNADANPRDRSLVEAVVQIARTAGMLVIAEGVDRASLPQVLLDLGV
CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCC
GLAQGYHVGRPRRLTELLGGPDGDDVTTVMSLGNRR
HHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]