| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313934
Identifier: 158313934
GI number: 158313934
Start: 2524659
End: 2525504
Strand: Direct
Name: 158313934
Synonym: Franean1_2100
Alternate gene names: NA
Gene position: 2524659-2525504 (Clockwise)
Preceding gene: 158313933
Following gene: 158313936
Centisome position: 28.11
GC content: 72.1
Gene sequence:
>846_bases ATGAGCTGGCAGATCCGGATCGAGCACTCGACGGGCTACCGGTACGCCAGCCCGGTGATCTCCTCGTACAACGAGGCCCG GATCATCCCCCAGACCGGGGACCGGCAGCTCACACTCGAGGCTACCGTCCGCACCGAGCCGTCCTCGTCCACCTACCGCT ACTGGGACTACTGGGGGACCCAGGTCACCGCGTTCGACCTGCACACCCCGCACACCGAGCTGATCGTCACCGGGCGCTCG GTCGTGCAGACGGCGCCCGCGCCGGCGCGGCCCACCGACGTCCCCGGCTGGGACGGCCTCACCGATGACCGCGTCTCGGA CCGGTTCGTCGAGTTCGTCCGGCCCACCGTCTCGACACCGGAGCACCCGGAGCTGCTGGCCGCCGCCCGCGAGCTCGCCG CCGCCAACACCCCCGCGGACTTCCTGCCCGCGGTCGGTGACTGGGTGCGGGAGAAGCTGCGCTACCAGCCTGGCACGACC GAGGTGCGCACCTCGGCCGTCGAGGCGTGGCAGCAGGGGGTGGGCGTGTGCCAGGACTTCGCCCACCTGGCGCTCGTCCT GATGCGCGCCGCCGGCATGCCGGCCCGCTACGTGTCGGGCTATCAGCACCCGTCGGCGGACGCCGCGGTGGGCGAGACCG TCAGCGGGCAGAGCCATGCCTGGGTCGAGGGCTGGCTGGGTGAGTGGTGGGGCTTCGACCCGACCAACGGCGTGCCCGCG GGCGAGCAGCATGTAGTGGTCGCCCGCGGGCGGGACTACAACGACGTCCCACCGATGTTCGGCGTGTACTCCGGTGGTGC CTCGACGTCCCTGGGCGTGACCGTCTCGGTGACCCGCCTGGGCTGA
Upstream 100 bases:
>100_bases CCGCGCACCTGGGCGAGCGAGGTGCCCGCCTGACGAGGGGCGGAGAACAGCAACGGGCGACAGCTGCGCGCAGCGCCGCA CACAAGGGAGACAGGCGACG
Downstream 100 bases:
>100_bases GCGGCGCTGGTGAGCCGGGCGGTCGGGAGGACCTGGGCGGTCAGGAGGACTTGATGGCCGAGACGTCCAGCTCGATCTTG ACCTTGTCGCTGATGAGCAC
Product: transglutaminase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MSWQIRIEHSTGYRYASPVISSYNEARIIPQTGDRQLTLEATVRTEPSSSTYRYWDYWGTQVTAFDLHTPHTELIVTGRS VVQTAPAPARPTDVPGWDGLTDDRVSDRFVEFVRPTVSTPEHPELLAAARELAAANTPADFLPAVGDWVREKLRYQPGTT EVRTSAVEAWQQGVGVCQDFAHLALVLMRAAGMPARYVSGYQHPSADAAVGETVSGQSHAWVEGWLGEWWGFDPTNGVPA GEQHVVVARGRDYNDVPPMFGVYSGGASTSLGVTVSVTRLG
Sequences:
>Translated_281_residues MSWQIRIEHSTGYRYASPVISSYNEARIIPQTGDRQLTLEATVRTEPSSSTYRYWDYWGTQVTAFDLHTPHTELIVTGRS VVQTAPAPARPTDVPGWDGLTDDRVSDRFVEFVRPTVSTPEHPELLAAARELAAANTPADFLPAVGDWVREKLRYQPGTT EVRTSAVEAWQQGVGVCQDFAHLALVLMRAAGMPARYVSGYQHPSADAAVGETVSGQSHAWVEGWLGEWWGFDPTNGVPA GEQHVVVARGRDYNDVPPMFGVYSGGASTSLGVTVSVTRLG >Mature_280_residues SWQIRIEHSTGYRYASPVISSYNEARIIPQTGDRQLTLEATVRTEPSSSTYRYWDYWGTQVTAFDLHTPHTELIVTGRSV VQTAPAPARPTDVPGWDGLTDDRVSDRFVEFVRPTVSTPEHPELLAAARELAAANTPADFLPAVGDWVREKLRYQPGTTE VRTSAVEAWQQGVGVCQDFAHLALVLMRAAGMPARYVSGYQHPSADAAVGETVSGQSHAWVEGWLGEWWGFDPTNGVPAG EQHVVVARGRDYNDVPPMFGVYSGGASTSLGVTVSVTRLG
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis Rv2569c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013589 - InterPro: IPR002931 [H]
Pfam domain/function: PF08379 Bact_transglu_N; PF01841 Transglut_core [H]
EC number: NA
Molecular weight: Translated: 30730; Mature: 30599
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWQIRIEHSTGYRYASPVISSYNEARIIPQTGDRQLTLEATVRTEPSSSTYRYWDYWGT CCEEEEEECCCCCEEHHHHHHCCCCCEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCC QVTAFDLHTPHTELIVTGRSVVQTAPAPARPTDVPGWDGLTDDRVSDRFVEFVRPTVSTP EEEEEECCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC EHPELLAAARELAAANTPADFLPAVGDWVREKLRYQPGTTEVRTSAVEAWQQGVGVCQDF CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH AHLALVLMRAAGMPARYVSGYQHPSADAAVGETVSGQSHAWVEGWLGEWWGFDPTNGVPA HHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC GEQHVVVARGRDYNDVPPMFGVYSGGASTSLGVTVSVTRLG CCCEEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEEEECC >Mature Secondary Structure SWQIRIEHSTGYRYASPVISSYNEARIIPQTGDRQLTLEATVRTEPSSSTYRYWDYWGT CEEEEEECCCCCEEHHHHHHCCCCCEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCC QVTAFDLHTPHTELIVTGRSVVQTAPAPARPTDVPGWDGLTDDRVSDRFVEFVRPTVSTP EEEEEECCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC EHPELLAAARELAAANTPADFLPAVGDWVREKLRYQPGTTEVRTSAVEAWQQGVGVCQDF CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH AHLALVLMRAAGMPARYVSGYQHPSADAAVGETVSGQSHAWVEGWLGEWWGFDPTNGVPA HHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC GEQHVVVARGRDYNDVPPMFGVYSGGASTSLGVTVSVTRLG CCCEEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]